mRNA_L-elsbetiae_contig11352.1188.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11352.1188.1
Unique NamemRNA_L-elsbetiae_contig11352.1188.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11352.1188.1 vs. uniprot
Match: D8LIN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIN1_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 4.330e-55
Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:   85 MTDSKAIDRKVTLLQRPKDADSAGDVSFEECMKLAQELKEFSRLPLSCRQYLDKKAVLHQACEGMTGDQVAQVSVARNSKIGRNMTHAQLQRRWTARENPLRKNSRK 405
            M DSK IDRKVT+LQRPKDADSA DVSFEEC+KLA+ELKE SRLP+SCRQYLDKKAVLHQACEGMTGDQ+A+VSVARNSKIGRNMTHAQLQRR TARENPLRKNSRK
Sbjct:    1 MADSKVIDRKVTILQRPKDADSASDVSFEECVKLAKELKEVSRLPVSCRQYLDKKAVLHQACEGMTGDQLAEVSVARNSKIGRNMTHAQLQRRLTARENPLRKNSRK 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11352.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIN1_ECTSI4.330e-5589.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11352contigL-elsbetiae_contig11352:150..5357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004500.1
Exons3
Model size1534
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11352.1188.1prot_L-elsbetiae_contig11352.1188.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11352 1237..5273 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.4209692-UTR-L-elsbetiae_contig11352:149..12361622815344.4209692-UTR-L-elsbetiae_contig11352:149..1236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11352 150..1236 -
1691682851.0885956-UTR-L-elsbetiae_contig11352:149..12361691682851.0885956-UTR-L-elsbetiae_contig11352:149..1236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11352 150..1236 -
1622815344.489113-UTR-L-elsbetiae_contig11352:5273..53571622815344.489113-UTR-L-elsbetiae_contig11352:5273..5357Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11352 5274..5357 -
1691682851.1362035-UTR-L-elsbetiae_contig11352:5273..53571691682851.1362035-UTR-L-elsbetiae_contig11352:5273..5357Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11352 5274..5357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.4584599-CDS-L-elsbetiae_contig11352:1236..13921622815344.4584599-CDS-L-elsbetiae_contig11352:1236..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11352 1237..1392 -
1691682851.0988743-CDS-L-elsbetiae_contig11352:1236..13921691682851.0988743-CDS-L-elsbetiae_contig11352:1236..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11352 1237..1392 -
1622815344.4682143-CDS-L-elsbetiae_contig11352:2667..28161622815344.4682143-CDS-L-elsbetiae_contig11352:2667..2816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11352 2668..2816 -
1691682851.1152327-CDS-L-elsbetiae_contig11352:2667..28161691682851.1152327-CDS-L-elsbetiae_contig11352:2667..2816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11352 2668..2816 -
1622815344.4799075-CDS-L-elsbetiae_contig11352:5215..52731622815344.4799075-CDS-L-elsbetiae_contig11352:5215..5273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11352 5216..5273 -
1691682851.1276062-CDS-L-elsbetiae_contig11352:5215..52731691682851.1276062-CDS-L-elsbetiae_contig11352:5215..5273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11352 5216..5273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11352.1188.1

>prot_L-elsbetiae_contig11352.1188.1 ID=prot_L-elsbetiae_contig11352.1188.1|Name=mRNA_L-elsbetiae_contig11352.1188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MTDSKAIDRKVTLLQRPKDADSAGDVSFEECMKLAQELKEFSRLPLSCRQ
YLDKKAVLHQACEGMTGDQVAQVSVARNSKIGRNMTHAQLQRRWTARENP
LRKNSRKGTKKNRVGHMGKT*
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mRNA from alignment at L-elsbetiae_contig11352:150..5357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11352.1188.1 ID=mRNA_L-elsbetiae_contig11352.1188.1|Name=mRNA_L-elsbetiae_contig11352.1188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5208bp|location=Sequence derived from alignment at L-elsbetiae_contig11352:150..5357- (Laminarionema elsbetiae ELsaHSoW15)
TACCTGTTCACGCGAGGTGAAACTCGAGCAAAACCACAGCAGTAGAGAGG
ATTACCGCAACGCAAAGCACAACAACACGGAAAGATGACGGACTCAAAGG
CTATCGACCGCAAGGTGACGCTTCTGCAGCGCCCGAAGGACGGTGAGTGA
AGTCAGCCCCCTCCACGAAATATGATCTGTAGATGCCGCGGAATGACACT
GGGGGCGAACCCAGGCTCCACCTTGAAGTGTGACAGGTGCTGCTGGCCCA
CGATTACCGTCAGCGAGGTTAAACGCATTCGCGCGAGTGTTGGATGTTGC
TTGTATTATGGCGAAATCCACGAGCTTGCTTTTTTGTTTTGCGAAAGAGA
GGAGTACTCGCTACAACCCTGCTTTTTTTACACGCATCTCACGTGTCGCC
ACTTTTTCCGTCGGGGTCTCAGGTCTGCTCTATTGTACTGTGTTGCTTCA
TTCACCGCCATTGCCGTCGAGAGCGTTCGGCAGCCCCATTGACCTTGTGC
TGGTGGGGTTAGCTCCCTTATTTTTACCACGCACTACTCTCTTGCCCGTC
AAGTTGCGCGTGTGTCTCTTCTTTGTTTTTCCAACATGCCTCTCATCATC
ATGTCTTTTCATTTTTTGCTCTTCTTGCTCTTCTTATCAAGCCTCACTCA
CGCACATCTCTCCTCCTCTGAAAGAGCAACTCTCCTCTGTGTACACACGA
TTGGTGGAATTTGCTGCTGTCTCTTGATGGGATTTGCTGCTTTCTCTTCG
AGGGAGAGAGTCCTCGGTAGACCGGCACTCGTTCGTGCATGGTATGGCGG
TGCGGGGTCCTTGATAATTGATAATATTGCGCGGCGGAACGCCCACCTTT
GTGTGTTCTCTGCTACATACAGGGCAAAGGGCAACATGTCCGTGTGTGTC
GCTCTCGATATTTTCGGCGGGGTGTGAAACATCGAGAACCGCTCGCAGAC
CTATACAGCCGGAGAAGGGAGTAGCAGCTGTGCGGTGTTGCTTTGGGGGG
TCGAAAAGCAGCAACCCAGCGTATCCATTATTCATTGCACAGGTCGGCGG
CAACTCTGTATTTTGATACGTAGAGCCGGCGTTAGTCTCAGATTGAACTT
TCGCGCAGGTTTGTTCCTCGGAAGAGAGCAGAGCAGAGGACAGGAGGGCA
GCCCTCCAGCGCACCACCTCCCTTCCCTCTTCTCCCGATGGAACATGCCG
CTCGCACACGGTTGCATACACCTCTGTTCACGCGTGTCGTTTATGGGGCG
GTTACACACCGCCCACTGCATGCACCCACACAGCAGCAGTACATAACAAC
AACAACAGTTGACTTGGGGGTAGTCTACGAACGGTGGTATCGGGGTCCCC
CGACCGGTCGGTGCGTTCGAGAAAACCACCGTGTAAAAGAGCGCTGTCTC
CACTTTTCTCGGGCGTGCTGCAGCGAGCGTCTGTCTAACTGGCTTCCGTT
CAGTCCTAGATTTGGCACGTGCTGTTTGCCTCGTTAAGTATATACCGCTG
GAAAAGTGCAAAGCAACGCAACGCACCCCCCCCGCGCTCACTGCCCCTCT
TGTGTGGGAGAAAAGGCTGCATACCATTGGAAGCCAGTTGTTTTCCCGTG
CGAGGAAAGTGCAGCTGGTCCACAAGCTGGACTACATAGGGACCGGTCCT
ACGCTGAGAGCTTAAGAGAGCCGCGTTTGCCCCAGAAGCCTAGGAAGGCG
GTGTCAGTGTGGCGATAATGTCGCCTCCTGCTACATCCTTCTATCTCACA
ACAGCAACAGTAGTACCCCTAGCCCTCGTCGTGGCCGTCAATTCTTACCC
CCACGTCCCCTCTCTCAACACCCCTTCGCCCGTATTCCCCCCTCCTCGCC
CCCATCCCCGCAAATACACTCCTGGCCAAGACATGGACTTTAGTTTGCAC
TCTTCTTCCCCCCCACCCCCCCCTGTTGGTTCGTTGCGGCTGTTTCCGCC
CGCCCGTGGGTAGTGGGGTCCCTCTGAAAAAGTGACCATGACACGACAGG
TCGACAGGTGCTTTGTGTTGGCAAGCTAAAAGCTAATGTGCGCTTTTGCA
ACGAACGGAAACTACTTCAACCTTTTTTGTATGTAGGAGATCTATCGTAC
CTTCAAGGCGGTTCTTCTTTTTTTGCTTAGTCTTGGCCTTACATATTCGT
GGTATTTATGCACCTACAAGTCCTTGGTAGAACTGGCAGGGATGTCGATT
CCGTTGCACTTTCACACGTAACACGCGAGGTCGTGATGCTCGTATCTGTA
CGTACATGGCCGCGCGGGCTCGCGCAAGATACGTCGAGGCAGGCAAACAG
ACAGACAGACAGACAGATCCCCACCCGTCCATTCTTTCTCCATCTTCGCG
GAGGTTTGATCACGTTTTTTACCGCCCTTGATAATCTCGAAACCCCTTCC
GAGTCATTTTTTGTTTCCCTCTGACCCTGCCCCCTTCTCCCATCCTTCTC
CCCCCCCCCCCCCCCCGGGACGGATGTCGAAATCTTCCGCCATGACTGCT
GTCATCGCCGCCGCCGCCGCCGTCGTCGTCGTGCTGACTAGCCGACAGCG
CAGGTGACGTCTCCTTCGAGGAGTGCATGAAGCTGGCCCAGGAGTTGAAA
GAGTTCTCGCGGCTGCCGCTGTCGTGCCGCCAGTACCTCGACAAGAAGGC
GGTGCTGCACCAGGCGTGCGAGGGGATGACAGGGGACCAGGTTAGTCGTT
GTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGGGGTGGCCCAGTCAC
CACCACCCCGGTCATCCACCGGGCCATTGCAGCTTCTACAGCCCCACTGC
AGCTACCCACTTCTGCCCCTCCCAGCCTATAGCCCTGCTGCGAGTTCTCC
GCGCCATGCCGGCATGCGCACTGCTGGTGTCCTGTCTCCCGTTTGCTTTC
AGTACCATGCGGTGTTGAGAGGACTACCGGAACGAGGAAAGTCAGCACTA
CTACTCATTGTCTGTGCACACGTTGTATATCTGCCCCCCCCCCCTCCTCC
CCGCAGCATGCGCACACACAACATTCATATGTGTGTGTTCCCGTATCCAG
GAGTGTGTCTTGAGAAAGGGTTTTCCCCACCGGTCCGGAGGCGCAGGGAG
TGCAGCCAACCAGCCGCAATCTAGTGTTGTTTGTCGCCGGTTCGGCGCGA
GCGAGACCGAGTTTTTCGTTTTCCGGGGCTGTCGTACATGTATAGGGGTG
TCGTGTAGGTGGGTGCATCGCCAGAAGCTGCAAAAAAAGCCACCCGTATT
TAACACGCGTAAAAAAGAAAAAGAAAAAAAAAAAAAAAGTTGGGACCTTC
TTTTTCTCGGAACCGTGCTTGCTGTGTACGATGCGCGGCAGCATGTAGAG
CCGCAACGAGCAGGCAAGATGTGCGTGGTCGCTACCCAAGCCTTGCGGAG
GGGGAGGGTTCGTAGTGTAAGGAAGCCTGCCCTCTGCTTCATGCAGCAAG
CCAGGGGTGCGTAGGAGCAACGGTGGAGGGGGGGGGGGAGGGAGGCACGG
ACGTAAGTGGGTCCTACATCAGCACCGTTTTCTAGCGGGGGTAGATGAGG
TTTGTGCCGAGTGTTGTTGGATAAGCGTGCGTTGCTTCGATGGATGGTCA
ACATGTGGCGGAGCATCTGGTCGAGCTGCGGAAGTTTTACGTCGTGGGGG
ATGCAGGCATAATCATAATACCCCCTCTCCTTGCCAGCTTGACACCACCG
CCCCGAGTAAAACAAAAGTCACATAATCGTTCGCCAGTCTTATCCTCATC
ATGGGTTCACTGATGTTACACTAGTTTCTGCATTCTGCCTTCGTCCTTGC
CCTACATAGAACTCTCTCGTTCTTGGGTCTCGCAACGGGTATTTTTCACG
CGCAGAGTCCGTCCGTTCAAGACTTTCGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCGTTAAAATCCCTACCATCGCTAATCTCTCTGTTTGTTC
TGTTCCTTCCCACAGGTGGCGCAAGTTTCCGTGGCCCGCAACAGCAAGAT
TGGACGCAACATGACCCACGCGCAGCTGCAGAGGCGATGGACCGCGCGCG
AGAACCCTCTCCGCAAGAACAGCCGGAAGGGAACGAAAAAAAACCGTGTG
GGACATATGGGAAAAACGTGAAACGTAAAAAAAAAAAAAAAAATACACGG
GCGGGGAAGCAAAAGAGACGACAAGGGAGTGTGCTGTGCTGGCCGTACGC
GGCAGACGAGAGGAACTGGGAGGAGCGCGGCGTGACAGCGAGGCAGGAAA
GGAAAAAAAACTGAGGACACCCTCGTGCCGAGAGATCCTGGAAGAGCGAG
GAAGAGAAGAGGAGCCATGGTTATATAGGGAGGGGGGGCAGAAGGGCTGA
GACGTGTGGCGAGACACAGGGCCGGAGGAGTGGGAGGTATCCCGGGGAAC
TAAATAGGACACCAAAGAACGGCGGTGCTTTTATCTGTTTTCGGGGGGGG
TGTGACTGGCAAGGAAGTGCTGCTTGGCACGCGTCGCGGGAGTAGCGGAC
GGTGGTGCTTCTGCCTGTCAAGGCTTTGAGCTCGCGATCTTGCCGCCGCT
GCCGCCTCTGCCGCTGCTGCTGCTGCTCTGTGCTTTCCTGTGCGTTTGGC
GGGGGCGGCTTGGTCGACTGTAGTTTTTTTTCTCTTTTCTCTTCTTTCCT
TGTACTTCGTGTCTTTTCTTTTTTCTTCTTCTTTACCGTCCCAAGCGTTG
TCGCCCTTCCCCGCTCAGGCCTCCGAAATGTTGCCTCTGTTTGTTTTGTT
TTTTTTATGGTGTCGTTTTCGGCCGGAAGCAAGAGAGACAAACAGCTTAG
CGCGAGAGATATCTGCAGGATACGTAGTGGAGGAAACTCGCCACTTGGGA
CTGTGGGTGTGGCGGTGGGGGCCTGGGTCGGAGACGGGTAGGTCCACTTT
AAATAGCGTTCAGGCGTGTCGTGAGTGTGTGCCTGCCTGCCTCCTTTGGC
AACATGCATGTAAATTATGATATGGTAGTCGATGGGAGAGACGAGATGAT
CGCCGCCGCAGAAGAAGCCTCTGCGAACACCCAACCTAGCGGTATACACG
CCGGGGGGGGGGGGGAGCAGCGTGGTAGGCTGTTGCCGAGAACCCCATCT
ATAGAAGAGGAGGAGGCCCTATTGGGCGGTTGGTGCCAGCTAGCGTCGCC
AGCTACGATAGCGTACGTGTGCGTTGTGTTTTCATTTTGTACGGGATAAA
AACCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11352:150..5357-

>mRNA_L-elsbetiae_contig11352.1188.1 ID=mRNA_L-elsbetiae_contig11352.1188.1|Name=mRNA_L-elsbetiae_contig11352.1188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig11352:150..5357- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGACTCAAAGGCTATCGACCGCAAGGTGACGCTTCTGCAGCGCCC
GAAGGACGATGACGGACTCAAAGGCTATCGACCGCAAGGTGACGCTTCTG
CAGCGCCCGAAGGACGCCGACAGCGCAGGTGACGTCTCCTTCGAGGAGTG
CATGAAGCTGGCCCAGGAGTTGAAAGAGTTCTCGCGGCTGCCGCTGTCGT
GCCGCCAGTACCTCGACAAGAAGGCGGTGCTGCACCAGGCGTGCGAGGGG
ATGACAGGGGACCAGCCGACAGCGCAGGTGACGTCTCCTTCGAGGAGTGC
ATGAAGCTGGCCCAGGAGTTGAAAGAGTTCTCGCGGCTGCCGCTGTCGTG
CCGCCAGTACCTCGACAAGAAGGCGGTGCTGCACCAGGCGTGCGAGGGGA
TGACAGGGGACCAGGTGGCGCAAGTTTCCGTGGCCCGCAACAGCAAGATT
GGACGCAACATGACCCACGCGCAGCTGCAGAGGCGATGGACCGCGCGCGA
GAACCCTCTCCGCAAGAACAGCCGGAAGGGAACGAAAAAAAACCGTGTGG
GACATATGGGAAAAACGTGAGTGGCGCAAGTTTCCGTGGCCCGCAACAGC
AAGATTGGACGCAACATGACCCACGCGCAGCTGCAGAGGCGATGGACCGC
GCGCGAGAACCCTCTCCGCAAGAACAGCCGGAAGGGAACGAAAAAAAACC
GTGTGGGACATATGGGAAAAACGTGA
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