mRNA_L-elsbetiae_contig11347.1186.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11347.1186.1
Unique NamemRNA_L-elsbetiae_contig11347.1186.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: D7FWD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD4_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.710e-11
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 LVACPSSPILSSPPPKVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            L+A   SP+  +   +VYILTTLNVLIEVNPQIRIPRTFKRFSGLM
Sbjct:   81 LLALLDSPLNKAGKLQVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 126
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: A0A507C362_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C362_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 5.810e-9
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   10 CPSSPILSSPPPK-----VYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            C   P+L SP  K     VY+ TT NVLIE+NPQ+RIPRTFKRF+GLM
Sbjct:   91 CVEHPLLDSPLNKSGLLQVYVRTTKNVLIEINPQVRIPRTFKRFAGLM 138
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: A0A2T9Y1G7_9FUNG (Uncharacterized protein n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9Y1G7_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.490e-8
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   46 KVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            +VYI TT NVLIE+NPQ+RIPRTFKRFSGLM
Sbjct:  173 QVYIRTTKNVLIEINPQVRIPRTFKRFSGLM 203
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: A0A1R1YCM5_9FUNG (Ribosomal RNA small subunit methyltransferase mra1 n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YCM5_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.590e-8
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   46 KVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            +VYI TT NVLIE+NPQ+RIPRTFKRFSGLM
Sbjct:  214 QVYIKTTKNVLIEINPQVRIPRTFKRFSGLM 244
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: A0A1R0H3G8_9FUNG (Ribosomal RNA small subunit methyltransferase mra1 n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H3G8_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.610e-8
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   46 KVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            +VYI TT NVLIE+NPQ+RIPRTFKRFSGLM
Sbjct:  233 QVYIRTTKNVLIEINPQVRIPRTFKRFSGLM 263
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: A0A6V1NKS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NKS5_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 3.450e-8
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 LVACPSSPILSSPPPKVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            L+A   SP+  +   KVYI TT NVLI+VNP IRIPRTFKRF+GLM
Sbjct:   68 LLALLDSPLNKAGKLKVYINTTKNVLIDVNPAIRIPRTFKRFAGLM 113
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: NEP1_CANGA (Ribosomal RNA small subunit methyltransferase NEP1 n=5 Tax=Nakaseomyces TaxID=374468 RepID=NEP1_CANGA)

HSP 1 Score: 56.2 bits (134), Expect = 3.570e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   46 KVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            +VYILT  NVLIEVNP +RIPRTFKRFSGLM
Sbjct:   90 QVYILTKKNVLIEVNPSVRIPRTFKRFSGLM 120
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: A0A507E013_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E013_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 3.650e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   46 KVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            +VYI TT NVLIEVNP +RIPRTFKRFSGLM
Sbjct:   91 QVYIQTTKNVLIEVNPHVRIPRTFKRFSGLM 121
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: A0A397TNS9_9GLOM (Alpha/beta knot methyltransferase n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TNS9_9GLOM)

HSP 1 Score: 56.6 bits (135), Expect = 3.960e-8
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 LVACPSSPILSSPPPKVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            L+A   SP+  +   +VYI TT NVLIEVNP +RIPRTFKRFSGLM
Sbjct:  172 LMALLDSPLNKAGLMQVYIHTTKNVLIEVNPHVRIPRTFKRFSGLM 217
[Close]
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Match: T1H111_MEGSC (Uncharacterized protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1H111_MEGSC)

HSP 1 Score: 54.7 bits (130), Expect = 5.280e-8
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   46 KVYILTTLNVLIEVNPQIRIPRTFKRFSGLM 138
            +VYI T  NVLIE+NPQIRIPRTFKRF+GLM
Sbjct:   14 QVYIKTEKNVLIEINPQIRIPRTFKRFAGLM 44
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11347.1186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD4_ECTSI3.710e-1173.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A507C362_9FUNG5.810e-962.50Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A2T9Y1G7_9FUNG1.490e-883.87Uncharacterized protein n=2 Tax=Harpellales TaxID=... [more]
A0A1R1YCM5_9FUNG1.590e-883.87Ribosomal RNA small subunit methyltransferase mra1... [more]
A0A1R0H3G8_9FUNG1.610e-883.87Ribosomal RNA small subunit methyltransferase mra1... [more]
A0A6V1NKS5_HETAK3.450e-865.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
NEP1_CANGA3.570e-883.87Ribosomal RNA small subunit methyltransferase NEP1... [more]
A0A507E013_9FUNG3.650e-883.87Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A397TNS9_9GLOM3.960e-865.22Alpha/beta knot methyltransferase n=1 Tax=Glomus c... [more]
T1H111_MEGSC5.280e-880.65Uncharacterized protein n=1 Tax=Megaselia scalaris... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11347contigL-elsbetiae_contig11347:6027..6164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog2880.D7FWD4
Preferred nameEMG1
KEGG koko:K14568
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000154,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001510,GO:0001701,GO:0001824,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005856,GO:0005874,GO:0005880,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0006997,GO:0007000,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0015630,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0017126,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031167,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042742,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0070013,GO:0070037,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098542,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.ribosomal RNA small subunit methyltransferase
EggNOG OGsCOG1756@1,KOG3073@2759
EC2.1.1.260
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.2312856-CDS-L-elsbetiae_contig11347:6026..61641622815344.2312856-CDS-L-elsbetiae_contig11347:6026..6164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11347 6027..6164 +
1691682850.948957-CDS-L-elsbetiae_contig11347:6026..61641691682850.948957-CDS-L-elsbetiae_contig11347:6026..6164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11347 6027..6164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11347.1186.1prot_L-elsbetiae_contig11347.1186.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11347 6027..6164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11347.1186.1

>prot_L-elsbetiae_contig11347.1186.1 ID=prot_L-elsbetiae_contig11347.1186.1|Name=mRNA_L-elsbetiae_contig11347.1186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
LVACPSSPILSSPPPKVYILTTLNVLIEVNPQIRIPRTFKRFSGLM
back to top

mRNA from alignment at L-elsbetiae_contig11347:6027..6164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11347.1186.1 ID=mRNA_L-elsbetiae_contig11347.1186.1|Name=mRNA_L-elsbetiae_contig11347.1186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=138bp|location=Sequence derived from alignment at L-elsbetiae_contig11347:6027..6164+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTCGCCTGCCCCTCCTCTCCAATCCTATCCTCTCCCCCCCCAAAGGT
TTACATCCTGACGACGCTAAACGTGCTCATCGAGGTCAACCCGCAGATCC
GAATCCCCCGAACATTCAAGCGGTTCTCCGGGCTGATG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11347:6027..6164+

>mRNA_L-elsbetiae_contig11347.1186.1 ID=mRNA_L-elsbetiae_contig11347.1186.1|Name=mRNA_L-elsbetiae_contig11347.1186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig11347:6027..6164+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTCGCCTGCCCCTCCTCTCCAATCCTATCCTCTCCCCCCCCAAAGGT
TTACATCCTGACGACGCTAAACGTGCTCATCGAGGTCAACCCGCAGATCC
GAATCCCCCGAACATTCAAGCGGTTCTCCGGGCTGATGCTTGTCGCCTGC
CCCTCCTCTCCAATCCTATCCTCTCCCCCCCCAAAGGTTTACATCCTGAC
GACGCTAAACGTGCTCATCGAGGTCAACCCGCAGATCCGAATCCCCCGAA
CATTCAAGCGGTTCTCCGGGCTGATG
back to top