mRNA_L-elsbetiae_contig11346.1185.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11346.1185.1
Unique NamemRNA_L-elsbetiae_contig11346.1185.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11346.1185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11346contigL-elsbetiae_contig11346:839..5837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_002820.1
Exons4
Model size977
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11346.1185.1prot_L-elsbetiae_contig11346.1185.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11346 964..5837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.1496594-UTR-L-elsbetiae_contig11346:838..9631622815344.1496594-UTR-L-elsbetiae_contig11346:838..963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11346 839..963 +
1691682850.8762934-UTR-L-elsbetiae_contig11346:838..9631691682850.8762934-UTR-L-elsbetiae_contig11346:838..963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11346 839..963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.1604695-CDS-L-elsbetiae_contig11346:963..10171622815344.1604695-CDS-L-elsbetiae_contig11346:963..1017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 964..1017 +
1691682850.8940256-CDS-L-elsbetiae_contig11346:963..10171691682850.8940256-CDS-L-elsbetiae_contig11346:963..1017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 964..1017 +
1622815344.1752691-CDS-L-elsbetiae_contig11346:1507..15941622815344.1752691-CDS-L-elsbetiae_contig11346:1507..1594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 1508..1594 +
1691682850.9052374-CDS-L-elsbetiae_contig11346:1507..15941691682850.9052374-CDS-L-elsbetiae_contig11346:1507..1594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 1508..1594 +
1622815344.1847565-CDS-L-elsbetiae_contig11346:4445..46251622815344.1847565-CDS-L-elsbetiae_contig11346:4445..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 4446..4625 +
1691682850.9134898-CDS-L-elsbetiae_contig11346:4445..46251691682850.9134898-CDS-L-elsbetiae_contig11346:4445..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 4446..4625 +
1622815344.1944473-CDS-L-elsbetiae_contig11346:5306..58371622815344.1944473-CDS-L-elsbetiae_contig11346:5306..5837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 5307..5837 +
1691682850.9231122-CDS-L-elsbetiae_contig11346:5306..58371691682850.9231122-CDS-L-elsbetiae_contig11346:5306..5837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11346 5307..5837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11346.1185.1

>prot_L-elsbetiae_contig11346.1185.1 ID=prot_L-elsbetiae_contig11346.1185.1|Name=mRNA_L-elsbetiae_contig11346.1185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
MASITALHFCIFRGSNEQAIALIEGGESDLNAGDNGGQTPCHIACYRDNV
EVVKKLIEAGADPAKADKSGNTPLHAAAGEGAMACVNLFVEKGVPSGVKN
VDGFTPLDLAELHCPPASRAAMLAVLSQHAAAQAQVEESRAIQKEKEACL
RKEIEQAKLQQQLQQQQEEPQQQQQLQQQPQPRFLHPPLPPSPSSIAGDA
PARLIPAVVDGGRGTRLSRRSSGQGRNASGTAAAANGSTTTSRGVHSNEG
GVGAGGERAEDGPRAALAAASGSKDPSHKALYR*
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mRNA from alignment at L-elsbetiae_contig11346:839..5837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11346.1185.1 ID=mRNA_L-elsbetiae_contig11346.1185.1|Name=mRNA_L-elsbetiae_contig11346.1185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4999bp|location=Sequence derived from alignment at L-elsbetiae_contig11346:839..5837+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGAAATTGCAGGCGCAGGCAGGGGCTTGCTCGTCACAGACTCTGACG
CGTTCTACAGATACCCCACCGAAAACGCACCCTGCCGGAGAGAGAGGGTG
ACTTCGCATAGCGTTAAAAGGAAACATGGCCAGCATCACCGCGCTTCATT
TCTGCATTTTCCGAGGAAGCAACGAGCAGGCAAGTTGTTTGCCCGTGGTG
TTAGGGGCGTTTGGCGCCCATCCTCTTCAGAGAGAGAGAGGGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGGAGACAGAGACCAAGAGAGAGAGAGAGAT
GCTGTGGTCTCCCGACACTTCTTCGCCGTGTTATTTCCCCTCAAATGGCA
AGGCCCAAAAGATGCGCATTGTAATGGCGATGATTTGCCGAATTGACCGC
TTATGTATGTAAAATGTAAAAAGAGACAAACTACTACCCTCTCATTGGCA
TGTAGTCTAGCTAAATCTGATGTTGGCATGAGGTCGCAGAAAAAAAGAAA
ATAACTTAAACTCCCCCAAACCTTGCCCCCGCGCCAGCTCTGCAAAGGTT
CTGCAAAGGTCACGCAGTAATTATTCCGGGGAGCCTGGCTGTTCTTGACA
CGAAACGTCGCAACAGCTACAAAGTGTGTGTCTGATGCGTATTTTGTTTC
CTCTGTGTTCGCTGTGCAGGCCATCGCTCTGATCGAGGGCGGAGAGAGCG
ACTTGAACGCCGGAGACAATGGGGGCCAGACTCCTTGCCACATCGCGTGC
TATAGGGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GGCAGGGAGAGAGACAGACAGAGTACCGTGCATGGGAGTCTGCGCACACA
GCAGTAGAGAGAGTACCTAATGTACCTCGGCCCGTCATCATGAGATTTAA
AAAAAATAGAAAGAGTGCCTCTAGCCGGTGCGAGCACTCTCATGGGCATA
TAAGAACGTTAGGGCCTCACCTGCATGGCTTGGCGTGAGATATCATGCAA
ATGCAGTAGTACCGTGGGGCAGACAGGTTATTACTGTGGAGAGCGATTTT
CTACCCAACCCAAGCCCAATTTCTCAGCGCTTCGCGTAAACCCAACCCGG
TGAAACTTGCGAAAACCGAGGCCGGGGATACGGGGATCGCGAACAAGCTC
GGGAGATACATTTTACCGCGACTGAATGAAGCACGCAGCCAGTATACCAG
TACTTTGCCGGGGGGGGGGGGGGGCGCGGGGGGGCCTACGGGGCTGCCCC
TTTTGCCGGTCGGGGTGGGAANNNNNNNNNNCAAAGCGACGGACAAACAA
GACACTGTCCTCGTGGTATCGGGGATGAAGGAGGGCACGCTTGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCTGGGGGCTCTACGGGCATG
CCCTATTTGCACGTCGCGCGTGCAAATGAGACGTGCACGCTTCGAACGCC
TCTTTTGCCTTTTGCACGCCTGGTGGGAACATTTTGCGAGTTTATGCCGC
TCCCGACGCAACCCGGACCCTAACCCAAACCCCAACCAAAACGCGTGACC
TGTGGGGTGATCGGGTGCGAAAGTCGCCTCTGCGCGGCTTCGCCGCACGT
TCGGTTGGCGTTCTTGCAAAAGCCGTGCGGCGGGCCTTCGGCCAATCAAA
CACGAGGCGTGCACGGTGTGATTTGCACGCGCGTCGTGGAAATAGCTAGG
GGGTACCGGGGCTTTGCGCGGTTTGTTGCGGTTTCAGTTGGCTTCACTTC
GAGCAAAAATTTACGTTGTTTGGCTACTGTTTGTTGGCAATTTTGCCAAC
AAACTGTGCGGATATGTAGTGGCGATTTTCGTCCATTTTGGCTCTGAAAA
AATACATCTTTAGTTGGATTAGTACAGACATCGAGAGGTACTGGACGGAG
AGATCGGAACGGTTTTTAATGTGAAGACAACATACATACATACATACATA
CAGATACCGATACGGGGGCTGTGGTCGTTATGAGCAGCCTGGCTGTTTGA
GCTTTCTGTCCCCTTACGCTCAAACAGACACAGCTGCTGTTTGTTGTGTG
TTGAGCTTGAACAGCCTGAACCAGCGCCTTGATAAACGTCAGTTTTCGAA
ACAGCTCGAACAGCTGCTGCTGTTGACAAACGTGCCCAGCTCTTTCGTGC
AAACTTGCAGCAGTCTTTTTTTCGTTTCAACGCTACTGTGCCGGCCAACG
GCAAAAAAAACGCAGCCCTCCCTGTAAGGTTGAGGTGGCACGCACGCACG
TACAGCCCCCCCACTCGAGAACTCTTCGCCTACATATCTCGACCACCTCG
AGACAGCTAAAGGCAGGCCAGTTTTTCCTGTAATGTCCATCGCAACGCAC
GGTCTGTGGTTGTCGCTCCCCTCATCATATGTGCAGGTGTTCGGACTCTT
TTGTGTGAAGAATAAGCAGCTGTTGTCGCGCTGCGGTCCCGCGCAAAAAA
CAAACCGGCACATTCCCTCAAAACTTGATACAATAGAGTGTTAGGGAACT
CGAACAGCAATCAACAGCAGGCAACATGGTATAATCTAGCTGTTCTTATC
TTGCTTTTTTTCGTGCTGTTTTCGTTAGTTTTTCTGGCGAACACCGCACA
ACAGGCACACACGCGGAAGCGGGCGCAACATTTTTCCGCCAATTTTTTGT
TTCTCTTCCCCCCAGTGTTCCAACTATATTTGAAAACTCGTTGAAAACGC
TCCAAGCTTGGCAGAGCAAATGTGAGAATATATCCCAGTTTCCCACGCGG
TTTTTACGAATCAGAGCCTGAACTCTTGACGCGTGACTTGGACCGCTATT
GCCGAGAGGTTCAAAACTGCACCCCCTTGACTTTGTGTCTTTTCTACATC
GCCATTGTCGCCCGACAAAATATTCCCGATTCTACTAATATCGGGCTAGC
TCATGCAAAAAAAAAACGAAAAATAAAAAGGTGCAGTTTTGATCCTCTCG
GCAATAGCGGTCCAAGTCACGTGTCAAAATTACAGGCTCTAATTCGTAAA
AACCGCGTGGGAAATCGCGTCCAGCTGTTTTGTGTGTGTGTCTTGCAGCC
TTTAGCAGCAGCAGCAGCAGCAACATCGGATCGGTCGGTGGTATCCCCCC
CGATATCTCAAAATTGAATATTTTGAGCCTTGTGTCGAGCGAGCATGAGA
ACATTCCGACTAAAAGTAGATCCGATTGATAGGTGTTACTTGCCTGTGTA
GCGAAGGTTCACGTTCTTACCATTTGACGGCATGACTGAAAAATCTATGT
ACATGCTCCCGCTTTCGATCCGGCGCACCAGAACCCCCTCCCCTCCCTTA
CTGTTCATGCATGCGTGTATGCATGGACCGCCAGCAGCGCTCCCATGTTC
TTCCCACACGAGTACGTACGTACTTGGGGCTTGGGGTATATATATATATA
TAGAAGTACAGGAGTATATATCTACTCCCGTGCGTATGTGGACGGAGGCG
TTTCGAGTAAATAAAGCAGATTAATCCCGACCTGCTCGCTCACTCACACA
CGACACACGAGACACTTTCGACGGGTGCACAAACACCAAAAACGGCGAAC
GGAACAGAACAGAACAAAACAAAACAAAACAAAAACGCCTCTTTTTTTCT
TATTCAGGACAACGTCGAGGTGGTGAAAAAGCTAATCGAGGCCGGGGCGG
ACCCCGCCAAGGCCGACAAGAGCGGCAACACTCCCCTGCACGCCGCCGCG
GGGGAAGGGGCGATGGCGTGCGTCAACCTCTTCGTCGAGAAAGGGGTCCC
GTCCGGCGTCAAGAACGTGGACGGCTTCACTCCTCTGGTGAGGAATGGAA
TGGGCTTGGAGGGCGGGAGGGGGGGGGCACAGTGCCTTGTTTTTTGGACC
ATATGTACGGGCGGGGCACGCCGACGTGCACGTCTGGACCGGATTTTTGC
TTGCACTCAACTCGTCTGAGGGGGAAGGGGAAATTATGGATGGTTCTTAC
GAGTAACTTTTTTTATGTAGCGAGCTCTACATGTTGTACGCTGTTTTATT
TGACGTAGCTTTTACACCTGTAGTATGTACATATGTTACATATATGTTGT
AGCTGACTCAACACAGACTCAACACAGCATTCTCTTGTCTCTTGCTGGCC
GACCGGCGGTCATGGCCTCCAACAACCCAACAACGACCGCTGCGGTTTTA
GATTGGAAGAAACAAGTGTGTGCCTATTTGTTGCCGCCCGCGTCTGTTCT
GAAAAATAATCCGAGCGGCCTCTCGTGTGCTAGCAAACGAGTAATCGTCA
TTCGCAATCGCAGACATGAACTAGGTGAAATAGAAACATATCCACCCGAT
TCTCGGTTTTTGTGGCAGGCACGCGGGTTCATACACAGCCTACGGTTTCT
TTCGCATCCATCGACCAGAGCAGCAGCGAATGGCATGAGCGCTCCGCTCC
CCCCGCGCAGCACAACCCAAACCCCGTCGTTGGCCTCGTTCGTTCGTTTG
TCGGTTCGTTGGTTCCAGGATTTGGCCGAACTGCACTGCCCCCCGGCGTC
ACGCGCGGCCATGCTTGCCGTCCTCTCGCAGCACGCCGCGGCACAGGCGC
AGGTGGAGGAGAGCAGGGCGATCCAGAAAGAGAAGGAGGCGTGCCTCAGG
AAGGAAATTGAGCAGGCGAAGCTCCAGCAGCAGCTCCAGCAACAGCAGGA
GGAGCCTCAGCAGCAGCAGCAGCTCCAGCAGCAGCCCCAGCCGCGCTTTC
TGCATCCGCCGCTGCCGCCCTCCCCTTCGTCCATAGCCGGAGACGCTCCT
GCGAGATTGATTCCCGCCGTCGTCGATGGAGGGCGAGGGACGCGACTTTC
GCGCCGAAGTAGTGGCCAAGGCCGGAACGCCAGCGGCACCGCCGCCGCCG
CCAACGGCTCCACTACCACCAGCAGAGGTGTGCACAGCAACGAGGGAGGG
GTTGGAGCTGGCGGGGAGCGCGCGGAGGACGGGCCCCGGGCGGCGCTGGC
GGCCGCATCGGGTAGCAAGGACCCTAGCCACAAGGCGCTCTACAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11346:839..5837+

>mRNA_L-elsbetiae_contig11346.1185.1 ID=mRNA_L-elsbetiae_contig11346.1185.1|Name=mRNA_L-elsbetiae_contig11346.1185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig11346:839..5837+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAGCATCACCGCGCTTCATTTCTGCATTTTCCGAGGAAGCAACGA
GCAGATGGCCAGCATCACCGCGCTTCATTTCTGCATTTTCCGAGGAAGCA
ACGAGCAGGCCATCGCTCTGATCGAGGGCGGAGAGAGCGACTTGAACGCC
GGAGACAATGGGGGCCAGACTCCTTGCCACATCGCGTGCTATAGGGCCAT
CGCTCTGATCGAGGGCGGAGAGAGCGACTTGAACGCCGGAGACAATGGGG
GCCAGACTCCTTGCCACATCGCGTGCTATAGGGACAACGTCGAGGTGGTG
AAAAAGCTAATCGAGGCCGGGGCGGACCCCGCCAAGGCCGACAAGAGCGG
CAACACTCCCCTGCACGCCGCCGCGGGGGAAGGGGCGATGGCGTGCGTCA
ACCTCTTCGTCGAGAAAGGGGTCCCGTCCGGCGTCAAGAACGTGGACGGC
TTCACTCCTCTGGACAACGTCGAGGTGGTGAAAAAGCTAATCGAGGCCGG
GGCGGACCCCGCCAAGGCCGACAAGAGCGGCAACACTCCCCTGCACGCCG
CCGCGGGGGAAGGGGCGATGGCGTGCGTCAACCTCTTCGTCGAGAAAGGG
GTCCCGTCCGGCGTCAAGAACGTGGACGGCTTCACTCCTCTGGATTTGGC
CGAACTGCACTGCCCCCCGGCGTCACGCGCGGCCATGCTTGCCGTCCTCT
CGCAGCACGCCGCGGCACAGGCGCAGGTGGAGGAGAGCAGGGCGATCCAG
AAAGAGAAGGAGGCGTGCCTCAGGAAGGAAATTGAGCAGGCGAAGCTCCA
GCAGCAGCTCCAGCAACAGCAGGAGGAGCCTCAGCAGCAGCAGCAGCTCC
AGCAGCAGCCCCAGCCGCGCTTTCTGCATCCGCCGCTGCCGCCCTCCCCT
TCGTCCATAGCCGGAGACGCTCCTGCGAGATTGATTCCCGCCGTCGTCGA
TGGAGGGCGAGGGACGCGACTTTCGCGCCGAAGTAGTGGCCAAGGCCGGA
ACGCCAGCGGCACCGCCGCCGCCGCCAACGGCTCCACTACCACCAGCAGA
GGTGTGCACAGCAACGAGGGAGGGGTTGGAGCTGGCGGGGAGCGCGCGGA
GGACGGGCCCCGGGCGGCGCTGGCGGCCGCATCGGGTAGCAAGGACCCTA
GCCACAAGGCGCTCTACAGGTAAGATTTGGCCGAACTGCACTGCCCCCCG
GCGTCACGCGCGGCCATGCTTGCCGTCCTCTCGCAGCACGCCGCGGCACA
GGCGCAGGTGGAGGAGAGCAGGGCGATCCAGAAAGAGAAGGAGGCGTGCC
TCAGGAAGGAAATTGAGCAGGCGAAGCTCCAGCAGCAGCTCCAGCAACAG
CAGGAGGAGCCTCAGCAGCAGCAGCAGCTCCAGCAGCAGCCCCAGCCGCG
CTTTCTGCATCCGCCGCTGCCGCCCTCCCCTTCGTCCATAGCCGGAGACG
CTCCTGCGAGATTGATTCCCGCCGTCGTCGATGGAGGGCGAGGGACGCGA
CTTTCGCGCCGAAGTAGTGGCCAAGGCCGGAACGCCAGCGGCACCGCCGC
CGCCGCCAACGGCTCCACTACCACCAGCAGAGGTGTGCACAGCAACGAGG
GAGGGGTTGGAGCTGGCGGGGAGCGCGCGGAGGACGGGCCCCGGGCGGCG
CTGGCGGCCGCATCGGGTAGCAAGGACCCTAGCCACAAGGCGCTCTACAG
GTAA
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