mRNA_L-elsbetiae_contig11343.1182.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11343.1182.1
Unique NamemRNA_L-elsbetiae_contig11343.1182.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11343.1182.1 vs. uniprot
Match: D7FMT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT9_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.020e-32
Identity = 94/198 (47.47%), Postives = 116/198 (58.59%), Query Frame = 1 
Query:    1 RTSAARKGLQLLMTPASPIIGLTKKLRSRHSRGASREG--LQALSGMDGAGDFVLTPVGP-GAAHVGDVESDGDVGCAGSDCGSEDSGESVEEGGGXXXXXXXXXXXXXXXXXXXXXXXXRQKRATKLARGLSHVARRWKKRPPVGVSGAMTVGRASLMGDGGNSYLRAHD--FDGEGARSYSGGWGKEASSPESGAR 579
            R + ++KG Q  + P SPI GL KK RS+ SRG+S +G  L ALSG+D  GDFVLTPVG  G  + GD+++         D GS++SG SVEEGG                         + KRATKLARGLS+VARR  KR  VG S AM++GR        NSYLRAHD  FDG+G RS++GGW    +SPE G R
Sbjct:   59 RDTVSKKGFQRWLRPPSPIPGLKKKFRSKRSRGSSLDGEVLHALSGVDREGDFVLTPVGSDGNNYAGDLDTSAGTDAL-DDAGSDNSGASVEEGG-VSAEAVAANLRGGGRGEGEDHSTGQPKRATKLARGLSNVARRLTKRS-VGSSEAMSLGRD-------NSYLRAHDADFDGDGPRSFTGGWSNSPTSPEHGER 246
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BLAST of mRNA_L-elsbetiae_contig11343.1182.1 vs. uniprot
Match: D7G345_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G345_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 7.600e-32
Identity = 94/198 (47.47%), Postives = 115/198 (58.08%), Query Frame = 1 
Query:    1 RTSAARKGLQLLMTPASPIIGLTKKLRSRHSRGASREG--LQALSGMDGAGDFVLTPVGP-GAAHVGDVESDGDVGCAGSDCGSEDSGESVEEGGGXXXXXXXXXXXXXXXXXXXXXXXXRQKRATKLARGLSHVARRWKKRPPVGVSGAMTVGRASLMGDGGNSYLRAHD--FDGEGARSYSGGWGKEASSPESGAR 579
            R + ++KG Q L+ P SPI GL KK RS+ SRG+S +G  L ALSG+D  GDFVLTPVG  G  + G +++         D GS++SG SVEEGG                         + KRATKLARGL +VARR  KR  VG S AM++GR        NSYLRAHD  FDGEG RS++GGW    +SPE G R
Sbjct:   59 RDTVSKKGFQRLLRPPSPIPGLKKKFRSKRSRGSSLDGEVLHALSGVDREGDFVLTPVGSDGNNYAGGLDTSAGTDAL-DDAGSDNSGASVEEGG-VSAEAVAANLRGGGRGKGEDHSTGQPKRATKLARGLLNVARRLTKRS-VGSSEAMSIGRD-------NSYLRAHDADFDGEGPRSFTGGWSNSPTSPEHGER 246
[Close]
BLAST of mRNA_L-elsbetiae_contig11343.1182.1 vs. uniprot
Match: A0A6H5JI30_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI30_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.140e-25
Identity = 86/199 (43.22%), Postives = 108/199 (54.27%), Query Frame = 1 
Query:    1 RTSAARKGLQLLMTPASPIIGLTKKLRSRHSRGASREG--LQALSGMDGAGDFVLTPVGP-GAAHVGDVESDGDVGCAGSDCGSEDSGESVE-EGGGXXXXXXXXXXXXXXXXXXXXXXXXRQKRATKLARGLSHVARRWKKRPPVGVSGAMTVGRASLMGDGGNSYLRAHD--FDGEGARSYSGGWGKEASSPESGAR 579
            R + ++KG Q  + P SPI GL KK RS+ SRG S +G  L+ALSG+D  GDFVLTPVG  G  + GD+++         D GS++SG  V  E GG                        + KR+ KLARGLS+VARR  KR         +VG +       N YLRAHD  FDG+G RSY+GGWG   +SPE G R
Sbjct:   64 RDTVSKKGFQRWLRPPSPIPGLKKKFRSKRSRGGSLDGQVLRALSGVDREGDFVLTPVGSDGTNYAGDLDTSAGTDAL-DDAGSDNSGAGVGVEEGGVSAEAVAANLRGGGRGEGEDRSTGQPKRSIKLARGLSNVARRLTKR---------SVGSSEA-----NIYLRAHDADFDGDGDRSYTGGWGNSPTSPEHGER 247
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11343.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMT9_ECTSI4.020e-3247.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G345_ECTSI7.600e-3247.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI30_9PHAE1.140e-2543.22CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11343contigL-elsbetiae_contig11343:5092..5670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.9738111-CDS-L-elsbetiae_contig11343:5091..56701622815343.9738111-CDS-L-elsbetiae_contig11343:5091..5670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11343 5092..5670 +
1691682850.7453568-CDS-L-elsbetiae_contig11343:5091..56701691682850.7453568-CDS-L-elsbetiae_contig11343:5091..5670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11343 5092..5670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11343.1182.1prot_L-elsbetiae_contig11343.1182.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11343 5092..5670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11343.1182.1

>prot_L-elsbetiae_contig11343.1182.1 ID=prot_L-elsbetiae_contig11343.1182.1|Name=mRNA_L-elsbetiae_contig11343.1182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
RTSAARKGLQLLMTPASPIIGLTKKLRSRHSRGASREGLQALSGMDGAGD
FVLTPVGPGAAHVGDVESDGDVGCAGSDCGSEDSGESVEEGGGAGSAAAS
VAAGAEGGGSEGGDSNGRQKRATKLARGLSHVARRWKKRPPVGVSGAMTV
GRASLMGDGGNSYLRAHDFDGEGARSYSGGWGKEASSPESGAR
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mRNA from alignment at L-elsbetiae_contig11343:5092..5670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11343.1182.1 ID=mRNA_L-elsbetiae_contig11343.1182.1|Name=mRNA_L-elsbetiae_contig11343.1182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=579bp|location=Sequence derived from alignment at L-elsbetiae_contig11343:5092..5670+ (Laminarionema elsbetiae ELsaHSoW15)
AGGACTTCCGCGGCTAGAAAAGGTCTCCAGTTACTGATGACCCCGGCCTC
TCCCATCATTGGCTTGACAAAAAAGCTCCGCTCTAGGCACTCGAGGGGAG
CAAGCCGGGAGGGTCTGCAGGCTTTGTCCGGGATGGACGGGGCTGGCGAC
TTTGTGCTCACGCCCGTAGGGCCCGGTGCCGCCCACGTCGGCGATGTGGA
AAGCGATGGAGATGTGGGCTGTGCTGGCAGCGACTGTGGTAGTGAAGACA
GCGGGGAAAGCGTCGAGGAGGGTGGTGGCGCTGGTTCGGCGGCAGCGTCG
GTAGCAGCCGGCGCTGAGGGGGGTGGGTCGGAGGGAGGAGACAGCAACGG
CAGACAAAAGCGAGCGACCAAGCTCGCGAGGGGTCTTTCCCACGTGGCTC
GGCGGTGGAAGAAGCGACCGCCGGTGGGAGTGTCTGGGGCGATGACTGTC
GGGAGGGCCTCGCTGATGGGGGATGGCGGTAACAGCTACTTGCGTGCGCA
CGATTTTGACGGCGAGGGTGCCAGGTCGTACTCGGGGGGCTGGGGAAAAG
AGGCATCCTCGCCGGAGAGCGGCGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11343:5092..5670+

>mRNA_L-elsbetiae_contig11343.1182.1 ID=mRNA_L-elsbetiae_contig11343.1182.1|Name=mRNA_L-elsbetiae_contig11343.1182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig11343:5092..5670+ (Laminarionema elsbetiae ELsaHSoW15)
AGGACTTCCGCGGCTAGAAAAGGTCTCCAGTTACTGATGACCCCGGCCTC
TCCCATCATTGGCTTGACAAAAAAGCTCCGCTCTAGGCACTCGAGGGGAG
CAAGCCGGGAGGGTCTGCAGGCTTTGTCCGGGATGGACGGGGCTGGCGAC
TTTGTGCTCACGCCCGTAGGGCCCGGTGCCGCCCACGTCGGCGATGTGGA
AAGCGATGGAGATGTGGGCTGTGCTGGCAGCGACTGTGGTAGTGAAGACA
GCGGGGAAAGCGTCGAGGAGGGTGGTGGCGCTGGTTCGGCGGCAGCGTCG
GTAGCAGCCGGCGCTGAGGGGGGTGGGTCGGAGGGAGGAGACAGCAACGG
CAGACAAAAGCGAGCGACCAAGCTCGCGAGGGGTCTTTCCCACGTGGCTC
GGCGGTGGAAGAAGCGACCGCCGGTGGGAGTGTCTGGGGCGATGACTGTC
GGGAGGGCCTCGCTGATGGGGGATGGCGGTAACAGCTACTTGCGTGCGCA
CGATTTTGACGGCGAGGGTGCCAGGTCGTACTCGGGGGGCTGGGGAAAAG
AGGCATCCTCGCCGGAGAGCGGCGCGAGGAGGACTTCCGCGGCTAGAAAA
GGTCTCCAGTTACTGATGACCCCGGCCTCTCCCATCATTGGCTTGACAAA
AAAGCTCCGCTCTAGGCACTCGAGGGGAGCAAGCCGGGAGGGTCTGCAGG
CTTTGTCCGGGATGGACGGGGCTGGCGACTTTGTGCTCACGCCCGTAGGG
CCCGGTGCCGCCCACGTCGGCGATGTGGAAAGCGATGGAGATGTGGGCTG
TGCTGGCAGCGACTGTGGTAGTGAAGACAGCGGGGAAAGCGTCGAGGAGG
GTGGTGGCGCTGGTTCGGCGGCAGCGTCGGTAGCAGCCGGCGCTGAGGGG
GGTGGGTCGGAGGGAGGAGACAGCAACGGCAGACAAAAGCGAGCGACCAA
GCTCGCGAGGGGTCTTTCCCACGTGGCTCGGCGGTGGAAGAAGCGACCGC
CGGTGGGAGTGTCTGGGGCGATGACTGTCGGGAGGGCCTCGCTGATGGGG
GATGGCGGTAACAGCTACTTGCGTGCGCACGATTTTGACGGCGAGGGTGC
CAGGTCGTACTCGGGGGGCTGGGGAAAAGAGGCATCCTCGCCGGAGAGCG
GCGCGAGG
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