mRNA_L-elsbetiae_contig11338.1179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11338.1179.1
Unique NamemRNA_L-elsbetiae_contig11338.1179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.720e-73
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQK-ENVAAVNEALSELYIEDEDHE 393
            KVLRACERALLWDEAVYLYKED QYDS VKTMIDHCVCF HELFLDCV KVRNQEVNYKAI+FYLEQHPLKLVRLL VLTPNLDHSRVVHQLR+AENLPLAIDYLKSVQK ENVAAVNEALSELYIEDEDHE
Sbjct: 1333 KVLRACERALLWDEAVYLYKEDAQYDSAVKTMIDHCVCFKHELFLDCVTKVRNQEVNYKAITFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRKAENLPLAIDYLKSVQKKENVAAVNEALSELYIEDEDHE 1464
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.110e-65
Identity = 104/131 (79.39%), Postives = 122/131 (93.13%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDHE 393
            KVLRACERALLWDEAVYLYKEDGQ+DS V+ MI+HC  + H+LF++CVQKVRNQE+ Y+AI FY+EQHPL LVRLL+VLTP+LDH+RVVHQLR+AENLPLA +YL+SVQKEN+AAVNEAL+ELYIEDEDHE
Sbjct: 1375 KVLRACERALLWDEAVYLYKEDGQHDSAVRAMIEHCTAWKHDLFIECVQKVRNQEIYYRAIGFYMEQHPLDLVRLLKVLTPHLDHARVVHQLRKAENLPLATEYLQSVQKENIAAVNEALNELYIEDEDHE 1505
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A7S2V2H1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2H1_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.450e-61
Identity = 95/131 (72.52%), Postives = 115/131 (87.79%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDHE 393
            K+LRACE+AL+WDEAVYLYK DGQ+D+ VKTMI+H VCF  +LFLDC+QK RNQE+ YKA+ FYL+Q+P+ L RLLQVLTP LDH+RVVHQ+R+AE+L L   YLKSVQKEN+ AVNEAL+ELYIEDED+E
Sbjct:   26 KLLRACEKALMWDEAVYLYKADGQHDNAVKTMIEHSVCFQADLFLDCIQKARNQEMYYKAVGFYLDQYPMLLERLLQVLTPQLDHARVVHQMRKAEHLHLVKGYLKSVQKENLTAVNEALNELYIEDEDYE 156
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A024U3J7_9STRA (Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024U3J7_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.650e-61
Identity = 96/131 (73.28%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDHE 393
            K+LRACE+ L WD AVYLYKEDGQ+D+ V+TM+DH V F H+LFLDC+QKVRNQE++YKAI+FYLEQHPL+L RLLQVLTPNLDH+RVVHQLR+++NLPL +DYLK VQKEN++AVNEAL+E+ +EDED++
Sbjct: 1359 KILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSDNLPLVVDYLKDVQKENLSAVNEALNEILVEDEDYQ 1489
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A2P4XMC0_9STRA (Clathrin heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMC0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 5.350e-61
Identity = 93/131 (70.99%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDHE 393
            K+LRACE+ L WD AVYLYKEDGQ+D+ V+TM+DH + F+H+LFLDC+QKVRNQE++YKAI+FYLEQHPL+L RLLQVLTPNLDH+RVVHQLR+++NLPL ++YLK VQKEN++AVNEAL+E+ ++DED++
Sbjct:  619 KILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPIAFSHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSKNLPLVVEYLKDVQKENLSAVNEALNEILVDDEDYQ 749
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A225V906_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V906_9STRA)

HSP 1 Score: 211 bits (537), Expect = 7.300e-61
Identity = 94/131 (71.76%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDHE 393
            K+LRACE+ L WD AVYLYKEDGQ+D+ V+TM+DH V F+H+LFLDC+QKVRNQE++YKAI+FYLEQHPL+L RLLQVLTPNLDH+RVVHQLR+++NLPL ++YLK VQKEN++AVNEAL+E+ ++DED++
Sbjct:  955 KILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFSHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSKNLPLVVEYLKDVQKENLSAVNEALNEILVDDEDYQ 1085
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: K3WLC2_GLOUD (Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 RepID=K3WLC2_GLOUD)

HSP 1 Score: 210 bits (535), Expect = 1.450e-60
Identity = 96/130 (73.85%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDH 390
            KVLRACE+ L WD AVYLYKEDGQ+D+ V+TM+DH V F H+LFLDC+QKVRNQE++YKAI+FYLEQHPL+L RLLQVLTPNLDH+RVVHQLR+  NLPL ++YLK VQKEN++AVNEAL+E+ +EDED+
Sbjct: 1362 KVLRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKTHNLPLVVEYLKDVQKENLSAVNEALNEILVEDEDY 1491
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A3R6ZXA9_9STRA (Clathrin-link domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZXA9_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.990e-60
Identity = 94/130 (72.31%), Postives = 119/130 (91.54%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDH 390
            K+LRACE+ L WD AVYLYKEDGQ+D+ V+TM+DH V F H+LFLDC+Q+VRNQE++YKAI+FYLEQHPL+L RLLQVLTPNLDH+RVVHQLR+++NLPL ++YLK VQKEN++AVNEAL+E+ +EDED+
Sbjct: 1895 KILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQRVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSDNLPLVVEYLKDVQKENLSAVNEALNEILVEDEDY 2024
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A5D6XWJ0_9STRA (Clathrin-link domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWJ0_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.740e-60
Identity = 95/130 (73.08%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDH 390
            KVLRACE+ L WD AVYLYKEDGQ+D+ V+TM+DH V F+H+LFLDC+QKVRNQE++YKAI FYLEQHPL+L RLLQVLTPNLDH+RVVHQLR+  NLPL ++YLK VQKEN++AVNEAL+E+ ++DED+
Sbjct: 1362 KVLRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFSHDLFLDCIQKVRNQEIHYKAIHFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKTSNLPLVVEYLKDVQKENLSAVNEALNEILVDDEDY 1491
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BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 209 bits (532), Expect = 3.690e-60
Identity = 95/131 (72.52%), Postives = 118/131 (90.08%), Query Frame = 1 
Query:    1 KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQKVRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPLAIDYLKSVQKENVAAVNEALSELYIEDEDHE 393
            KVLRACE+ L WD AVY YKEDGQ+D+ V+TM+DH V F H+LFLDC+QKVRNQE++YKAI+FYLEQHPL+L RLLQVLTPNLDH+RVVHQLR+A NLPL ++YLK VQKEN++AVNEAL+E+ ++DED++
Sbjct: 1765 KVLRACEKGLHWDHAVYXYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKANNLPLVVEYLKDVQKENLSAVNEALNEILVDDEDYQ 1895
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11338.1179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI1.720e-7393.94Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZH1_9STRA7.110e-6579.39Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2V2H1_9STRA1.450e-6172.52Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A024U3J7_9STRA1.650e-6173.28Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxI... [more]
A0A2P4XMC0_9STRA5.350e-6170.99Clathrin heavy chain n=1 Tax=Phytophthora palmivor... [more]
A0A225V906_9STRA7.300e-6171.76Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho... [more]
K3WLC2_GLOUD1.450e-6073.85Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 ... [more]
A0A3R6ZXA9_9STRA1.990e-6072.31Clathrin-link domain-containing protein n=8 Tax=Ap... [more]
A0A5D6XWJ0_9STRA2.740e-6073.08Clathrin-link domain-containing protein n=1 Tax=Py... [more]
A0A2D4BEN2_PYTIN3.690e-6072.52Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11338contigL-elsbetiae_contig11338:4229..5625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.1
Seed ortholog evalue2.3e-63
Seed eggNOG ortholog2880.D7FWD1
Preferred nameCLTC
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Ec32 ortholog descriptionClathrin heavy chain
Ec32 orthologEc-25_000560.1
Exons3
Model size393
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11338.1179.1prot_L-elsbetiae_contig11338.1179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11338 4229..5625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.5239077-CDS-L-elsbetiae_contig11338:4228..43781622815343.5239077-CDS-L-elsbetiae_contig11338:4228..4378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11338 4229..4378 +
1691682850.2838404-CDS-L-elsbetiae_contig11338:4228..43781691682850.2838404-CDS-L-elsbetiae_contig11338:4228..4378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11338 4229..4378 +
1622815343.5333295-CDS-L-elsbetiae_contig11338:4923..51031622815343.5333295-CDS-L-elsbetiae_contig11338:4923..5103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11338 4924..5103 +
1691682850.314073-CDS-L-elsbetiae_contig11338:4923..51031691682850.314073-CDS-L-elsbetiae_contig11338:4923..5103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11338 4924..5103 +
1622815343.5423765-CDS-L-elsbetiae_contig11338:5562..56251622815343.5423765-CDS-L-elsbetiae_contig11338:5562..5625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11338 5563..5625 +
1691682850.3287814-CDS-L-elsbetiae_contig11338:5562..56251691682850.3287814-CDS-L-elsbetiae_contig11338:5562..5625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11338 5563..5625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11338.1179.1

>prot_L-elsbetiae_contig11338.1179.1 ID=prot_L-elsbetiae_contig11338.1179.1|Name=mRNA_L-elsbetiae_contig11338.1179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
KVLRACERALLWDEAVYLYKEDGQYDSGVKTMIDHCVCFNHELFLDCVQK
VRNQEVNYKAISFYLEQHPLKLVRLLQVLTPNLDHSRVVHQLRRAENLPL
AIDYLKSVQKENVAAVNEALSELYIEDEDHE
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mRNA from alignment at L-elsbetiae_contig11338:4229..5625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11338.1179.1 ID=mRNA_L-elsbetiae_contig11338.1179.1|Name=mRNA_L-elsbetiae_contig11338.1179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1397bp|location=Sequence derived from alignment at L-elsbetiae_contig11338:4229..5625+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGCTGCGCGCGTGCGAGAGAGCTCTGCTCTGGGACGAGGCCGTGTA
CCTCTACAAGGAGGACGGCCAGTACGACTCCGGCGTCAAGACCATGATCG
ACCACTGCGTGTGCTTCAACCACGAGCTGTTCCTCGACTGCGTTCAGAAG
GTGCGCGCGTGTTTTATTTATTATTATTTATTTATTTTTATTTCCGACAA
ATTATGTTTTTTAATGTATGCAAATGTATGCAAATGTCAGCAATCAACGT
CCAGTCGGCGAAAAAACATTCCAGAGGGATCTGTTGTAGGCTTCTTTTTT
TTTTTGTGTGTGTTTTGACGCCCCGCTCCTTTCTTCGTTCCTTTAAAGCG
AGATCTTTTGCTATCTTGCTGCGGTTAAATTACGCTTGAACTAAAATATT
CCACTGCGTACGGACCGGGCCAGGCCGTTTGGTGCCGCAGGAAGATCGCG
TCGAATGCGTTGGTTCACACAACGAGCACGAAACACACCATACTTTTTCT
TGGAAGCACGCTCTCCGTATCGATGCCGATGCCGAGCAAAACCATCACTA
TCGAAAAGGCGAAGAATTCCTGTTTTGTGCCCCCCCCCCCCCGCTGCCTG
CGGTCCATGCGCCGACGCTAAGCATCCATTTCTTAGTCTTCTACCTCTTT
CCGTGCTGTGTGCACGCACGCGCACAACAACCGATCTGTGGGCAGGTCCG
AAACCAGGAGGTGAACTACAAGGCCATCAGCTTCTACCTGGAGCAGCACC
CCCTCAAGCTCGTGAGGCTCCTGCAGGTGCTGACCCCGAACCTCGACCAC
AGCCGCGTGGTGCACCAGCTGAGGAGGGCGGAGAACCTGCCGCTAGCTAT
CGACTACCTCAAATCCGTGCAGAAGGTGAAACCATGTCATCATTTAACCC
CCCCCCCCTAGATCACACTGTCTGTCTCCCCGCCCCCTATTAATTTTTAT
ATATTTGTTTAGACTTGACTCAAATTCCGTGCAGACGGTGATTGAGGAAA
GGACACCCGCCGGAGACTGTTGGTGGTGGTGTCGGGCGTTGGGGGGTCTT
TTTTGGGGGGGTCTTTTTTTTGGGGGGGGGTGTCGGTGCTTGTAAGCGTT
GCCGTTACCGGGCACGTATGTATTATGTTTGCTCGTTCCTCCCATCATAC
GCATGCACATGGCACATGGTATCGCCCGCTGTGTGTGTATGTTACTCACG
ACTTGCGCCGGTTTTTTGTTTCCCTCTCAAAAGTGGATTGTTCTGAACTT
GTCGATTGGCCTGCGCTCCGTCTCTCCTGTCTTCGTCTTCGCCCTCTTTG
TACCTTTTTTTGTCTTCCTTGCACACACACACAGGAGAACGTCGCTGCCG
TCAACGAGGCTTTGAGCGAGCTGTACATCGAGGACGAGGACCACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11338:4229..5625+

>mRNA_L-elsbetiae_contig11338.1179.1 ID=mRNA_L-elsbetiae_contig11338.1179.1|Name=mRNA_L-elsbetiae_contig11338.1179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig11338:4229..5625+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGCTGCGCGCGTGCGAGAGAGCTCTGCTCTGGGACGAGGCCGTGTA
CCTCTACAAGGAGGACGGCCAGTACGACTCCGGCGTCAAGACCATGATCG
ACCACTGCGTGTGCTTCAACCACGAGCTGTTCCTCGACTGCGTTCAGAAG
AAGGTGCTGCGCGCGTGCGAGAGAGCTCTGCTCTGGGACGAGGCCGTGTA
CCTCTACAAGGAGGACGGCCAGTACGACTCCGGCGTCAAGACCATGATCG
ACCACTGCGTGTGCTTCAACCACGAGCTGTTCCTCGACTGCGTTCAGAAG
GTCCGAAACCAGGAGGTGAACTACAAGGCCATCAGCTTCTACCTGGAGCA
GCACCCCCTCAAGCTCGTGAGGCTCCTGCAGGTGCTGACCCCGAACCTCG
ACCACAGCCGCGTGGTGCACCAGCTGAGGAGGGCGGAGAACCTGCCGCTA
GCTATCGACTACCTCAAATCCGTGCAGAAGGTCCGAAACCAGGAGGTGAA
CTACAAGGCCATCAGCTTCTACCTGGAGCAGCACCCCCTCAAGCTCGTGA
GGCTCCTGCAGGTGCTGACCCCGAACCTCGACCACAGCCGCGTGGTGCAC
CAGCTGAGGAGGGCGGAGAACCTGCCGCTAGCTATCGACTACCTCAAATC
CGTGCAGAAGGAGAACGTCGCTGCCGTCAACGAGGCTTTGAGCGAGCTGT
ACATCGAGGACGAGGACCACGAGGAGAACGTCGCTGCCGTCAACGAGGCT
TTGAGCGAGCTGTACATCGAGGACGAGGACCACGAG
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