mRNA_L-elsbetiae_contig11332.1178.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11332.1178.1
Unique NamemRNA_L-elsbetiae_contig11332.1178.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11332.1178.1 vs. uniprot
Match: D7G1K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K5_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.300e-73
Identity = 113/134 (84.33%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:    7 QISSLSVPRLPNPPRFEMTSCCFKHQCVFAGGRVSMGQGGVGFNSDRAEVWDGATWSFATWGEHTLSEPRHLMGSAVIEISGGARTRTVGFFAGGVSNTGDSSMVDMFDFDERRVLPRMYAPTVRGPTQGLSLS 408
            ++++L VPRLPNPPRFEMTSCCFKHQCVFAGGRVSMG+GG GFNSDRAEVWDGATWSFATWGEHTLSEPRHLMGSAVIEIS G   RTVG FAGGVSNTGDSSMVD+FDFDERRVLPRM APTVR   +G   S
Sbjct:  252 KVATLPVPRLPNPPRFEMTSCCFKHQCVFAGGRVSMGEGGAGFNSDRAEVWDGATWSFATWGEHTLSEPRHLMGSAVIEISTGPEKRTVGMFAGGVSNTGDSSMVDLFDFDERRVLPRMDAPTVRANARGFLFS 385
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BLAST of mRNA_L-elsbetiae_contig11332.1178.1 vs. uniprot
Match: A0A6H5KCH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH0_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 9.120e-70
Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = 1 
Query:    7 QISSLSVPRLPNPPRFEMTSCCFKHQCVFAGGRVSMGQGGVGFNSDRAEVWDGATWSFATWGEHTLSEPRHLMGSAVIEISGGARTRTVGFFAGGVSNTGDSSMVDMFDFDERRVLPRMYAPTVRGPT----QGLSLSREVAAFVG 432
            ++++L VPRLPNPPRFEMTSCCFKHQCVFAGGRVSMG+GG GFNSDRAEVWDG+TWSFATWGEHTLSEPRHLMGSAVIEIS G+  RTVG F GGVSNTGDSSMVD+FDFDERRVLPRM APTV         G S + E +AFVG
Sbjct:  177 KVATLPVPRLPNPPRFEMTSCCFKHQCVFAGGRVSMGEGGAGFNSDRAEVWDGSTWSFATWGEHTLSEPRHLMGSAVIEISTGSEKRTVGMFTGGVSNTGDSSMVDLFDFDERRVLPRMDAPTVSASPGFQPSGGSGAEEASAFVG 322
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BLAST of mRNA_L-elsbetiae_contig11332.1178.1 vs. uniprot
Match: A0A835ZD19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD19_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.840e-47
Identity = 91/201 (45.27%), Postives = 129/201 (64.18%), Query Frame = 1 
Query:   10 ISSLSVPRLPNPPRFEMTSCCFKHQCVFAGGRVSMGQGGVGFNSDRAEVWDGATWSFATWGEHTLSEPRHLMGSAVIEIS-GGARTRTVGFFAGGVSNTGDSSMVDMFDFDERRVLPRMYAPTVRGPTQGLSLSREVAAFVGATGKIDVFDGRTLCWLSYEAEGFLPGTGVVGRSAKWFFD-----GASPGFQPSGGGSAE 594
            +++L V RLP P RF+M+SCCFKH CVFAGG+V++     G+ SDR +VW+G  W + +  +HTLSE R  MG+A +E++        VGFFAGGV   G+  +VD++DF   R LPR+Y PTVRG   G++L  + A F+  TG++DVF+  +LCW SY+ +G   G    GR+ +W+FD     G   G+  SGGG+ E
Sbjct:  224 VTNLPVQRLPQP-RFDMSSCCFKHICVFAGGQVNLD----GYFSDRVDVWNGERWGWTS--DHTLSEARFGMGTASLEMALADGVVHMVGFFAGGVGRAGNLFLVDLYDFASDRWLPRIYLPTVRGKCSGVTLGIDAAMFIADTGEVDVFNSTSLCWTSYKLDGIALGAVAAGRAPQWYFDPDATAGGGSGYYRSGGGAPE 417
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11332.1178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1K5_ECTSI1.300e-7384.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCH0_9PHAE9.120e-7078.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD19_9STRA1.840e-4745.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11332contigL-elsbetiae_contig11332:1522..5985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11332.1178.1prot_L-elsbetiae_contig11332.1178.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11332 1522..5985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.4461033-CDS-L-elsbetiae_contig11332:1521..16261622815343.4461033-CDS-L-elsbetiae_contig11332:1521..1626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 1522..1626 +
1691682850.2281737-CDS-L-elsbetiae_contig11332:1521..16261691682850.2281737-CDS-L-elsbetiae_contig11332:1521..1626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 1522..1626 +
1622815343.4582417-CDS-L-elsbetiae_contig11332:2375..25281622815343.4582417-CDS-L-elsbetiae_contig11332:2375..2528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 2376..2528 +
1691682850.2394717-CDS-L-elsbetiae_contig11332:2375..25281691682850.2394717-CDS-L-elsbetiae_contig11332:2375..2528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 2376..2528 +
1622815343.4709275-CDS-L-elsbetiae_contig11332:3554..36761622815343.4709275-CDS-L-elsbetiae_contig11332:3554..3676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 3555..3676 +
1691682850.2506194-CDS-L-elsbetiae_contig11332:3554..36761691682850.2506194-CDS-L-elsbetiae_contig11332:3554..3676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 3555..3676 +
1622815343.484052-CDS-L-elsbetiae_contig11332:4860..49691622815343.484052-CDS-L-elsbetiae_contig11332:4860..4969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 4861..4969 +
1691682850.266475-CDS-L-elsbetiae_contig11332:4860..49691691682850.266475-CDS-L-elsbetiae_contig11332:4860..4969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 4861..4969 +
1622815343.4939458-CDS-L-elsbetiae_contig11332:5859..59851622815343.4939458-CDS-L-elsbetiae_contig11332:5859..5985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 5860..5985 +
1691682850.274841-CDS-L-elsbetiae_contig11332:5859..59851691682850.274841-CDS-L-elsbetiae_contig11332:5859..5985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11332 5860..5985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11332.1178.1

>prot_L-elsbetiae_contig11332.1178.1 ID=prot_L-elsbetiae_contig11332.1178.1|Name=mRNA_L-elsbetiae_contig11332.1178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
QPQISSLSVPRLPNPPRFEMTSCCFKHQCVFAGGRVSMGQGGVGFNSDRA
EVWDGATWSFATWGEHTLSEPRHLMGSAVIEISGGARTRTVGFFAGGVSN
TGDSSMVDMFDFDERRVLPRMYAPTVRGPTQGLSLSREVAAFVGATGKID
VFDGRTLCWLSYEAEGFLPGTGVVGRSAKWFFDGASPGFQPSGGGSAEEE
ASAFV
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mRNA from alignment at L-elsbetiae_contig11332:1522..5985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11332.1178.1 ID=mRNA_L-elsbetiae_contig11332.1178.1|Name=mRNA_L-elsbetiae_contig11332.1178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4464bp|location=Sequence derived from alignment at L-elsbetiae_contig11332:1522..5985+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCCCAAATCTCCAGCCTCTCCGTCCCACGCCTCCCTAACCCTCCACG
GTTCGAGATGACGTCATGCTGCTTCAAGCACCAGTGCGTCTTCGCTGGAG
GACGGGTGAGCTAGAATTGCTGCGGGATGGGAGAAGGGGGGGGGGGGGGG
GGGGGGGGGGGGTCGATACGGAACACGCAAACAGGCTTGTTATGCTCGTG
GTGGGATATTTTTGAGGCGAGCGCGGACAGCCATTGCTGCGCCACGGTTT
CATCAAGTCTGGAACATGCTGCTGTTCTCTTATCTGGAGCTCGAAACGCG
GCTACGTTCGTTGCTTGCCACTTGTACCCCCCCCCCGGAGTTAGCCTGTA
CCGCCGGGCGTGGAAGGTTAGCGCTGCCAAAGGGGCACAGAGAGTCGGAG
ATAGAACTGACCTTTTGCGCTATCTCTGCCTACAGCCTTCCTTTCAATGC
CCCCCCAGCTTTGGAGGGCTGCCAGGGTCGGATGGTCTCGAATTCGCATA
TCTATTTGTTTTACTTTGTGTATACGGCTCCGTGATTTGTATGATTCTGA
GCTCATCCCTCTCCGAACAAGCAGCGCTTGCGGTGTTCTTGGTTCTCCCG
CCGCGTGTGTATGGCTTTGGCGGAGTCGGCGGCCGTGGCCAATGGTCGAA
TGCATGACTGCATGACTGCTAAAGCATTATATTGTTTACATTACCGAGTA
GACCGCCTCACCTATTCCGCTCCGGGAAGGCAGGCATGATCAATGGTCAA
ACGGCAGAGGCGTGCGCCGTCATGGAGCATGCCCCCCCCCCCCCCGCCCC
CGCCCCGGGAACCCCCCCCGGTGTTGTAACTTCATCTTGTTGCTTACTCT
TCAGGTTTCGATGGGGCAGGGAGGCGTCGGCTTCAACAGCGACCGCGCGG
AGGTTTGGGACGGGGCCACGTGGAGCTTCGCGACGTGGGGGGAGCACACG
CTGTCCGAGCCGCGGCACCTCATGGGGTCCGCGGTGATCGAGATTTCTGG
CGGCGCGGTGGGTTCTCGCGCCTGTGTCTTTTGTTTTCGTCCCGGACTAT
ACATACTTGTTTTTCTTTTTTTCTTATTTTTTTTTTTCTTTCAGCGTCCG
GCGTCGTGCGACCTGTTCTTTGTACCGCCGTTTTTTCGCCCACGGGTCCC
CTTCTGTGTGACCACGGGTCTTCAGAGCTCTGGCAAGATGCCCCTCGGTT
TAACGTGATATTTCTTTACATATAAAAAAGGAGAAACAGCGCGAAGTTTT
TTTACACGGCGTTCATGGATGGGAAAGGCGCCGCCGTTTCGCTCACCGTG
GTTGGCCTTTTTGTCGTGTCGCCGTTTCATGGCTTTTCGTTATTTCGGTC
TTTCTCGCTCGTGTGCGTGTGTCTCTCTGTGTGCTTTCTTGATTAGCATC
GACCGTTATCATTTATTTATTTTTCCAGTTACCCTTCTTAGGGGAAGTTA
TCCTGCGACCACGGGAATCGACCGCGTCAGTGTTGGATTAATACGAACTC
ATGGAACCCCGTCGCCCCGGTGGTCTAGTGGGTAACCTCGAAACCCGCTA
GTAGCAAAGGTCACGGGTTCGAATTCCTGTCGGGGCGAAAAATTAGCAAA
TTTGCAGGTGAAAGCGAATAAAGCTGAAAAGCTCGTGAGTTAACAACCTT
CGACTTCACCGTTGACGATGGAAGGGACAGCCGTACCCATCTCGCGATAA
AATCCAAGGCAAGAACCACAGGAAGAAGGTGGGGCAGAAAACAAAAAACA
AAAAGAAGAAAAAAGCCCCAGTGTTTACCCCCTCCTGTGTGACCCCGGCG
GATACGTCATGCTGTACAAAGAAGCAGCACCGCAACGTGCATGTTGTACA
CACACCGAAACGTGTGGCAGACGCCCGAATAAATGGGATGAAAAAACACA
CACACATACACACATGGAGGTCGACGGGTAGAGATATCGGAACGGTTTTC
AATGTGAATACAACAACAACGTGCTTACCGGTGTGTCTACATATGTGTTT
TGTGTCTGTGCGTGTGTCTGTGTGTGAGCTCAGCGGACGCGAACAGTCGG
CTTTTTCGCCGGAGGCGTTTCCAACACGGGGGACTCGTCCATGGTGGACA
TGTTCGACTTCGACGAGCGGAGGGTGCTGCCAAGGATGTACGCCCCGACG
GTCAGGTGTGTGGTGTCTGCCTGCGCCGGTGTTCTTGTGCTAACTGACTC
TCTGTTGTTAGTTTTGTTTTTGCCACCAGTCGGCTGACCAATCGCATTGC
GTCAGCCCTCGGCGGGGGCTGGAATACGAACAAGCGTGTTATTTTTTGAG
GGAGCTGCGTGTGTGTGATGTGGTGGCGCGGGACTCCGTGGCTTGGTTGT
TTGTCATGGGGGAGGGAGCCGGACCGAAGGATCCAGCCTGCGGTTTGGAG
GGAGTCCTCATCCCATGCACACTTTTTTTACTAGGTGCGTAATGCCATGC
ACACTTTTTTTGCTAGGTACATAATGCCTTATACTATCGCACTATCACTC
CTCTCACTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGCTCCTGTT
CTGGCAGCAGCAACAGTGCTCCTGTTGTGTCGGGACTTACTTTTTCGCCC
ACCTGCTGGTTCGTTGTGAAGTCATTCGATCATCGCCGCTGCTCTGCTTG
CGGATGTTCGTTCGCACCCGCCTCCGTTCGCTTCGTCGTGACATACCTTG
GTGGGATTTGTTTTCTACGGCAGCTTTCCCATACAAGGCTCGTGCGCACT
TTCGTGACCAAGAGCGTTACGGTCCCATTTCCCACACGTCCATGCTGCCG
CTGTTTTGTCTGGCAGCCCAAGAACATAAAACCAGCCGCGGTATCTCCGC
CTCGCGGCTAAATTAGCACACAAAGCTAAATAGTGCTTGAGAGGATCTTC
GGAGATTTGCGCACCGTGTGGTTGTTTTTGCGGTGCAACCCGTTCGGTTC
TGCGATCCTGCGTCGCCCCAGCATCAACAGGTGTTCGGTTCGCCCCCCAG
GGGTCGCCCGGCATGCGTTTGTCCCGCGCCCTAAGTATGCGTGTAGGATA
GATTGACCACGATCCCGTTGTGTTCCGTGTAGTTTTCTCTCCCTTGTCTC
TCTGATTTTTTCTCTCTTGTTTGACTCTCTCCTCCTCCGTCTTGTTTGTT
TGTTCGTTTTTTTCTTTGTTTCTCTCGCTTCATTTTTCGTTTCTCTCGTT
CCCTCTCTTCCGTCCTTCACATTATTTTCGCTGTCTCTTTTGTGTCGTTC
GTTTGTTTTCTCTGTCTAATGTGTTTGTTTTCTGTTCTTTCTTTCTTTCT
TCTTTCTTCCGTTTTTTTTTTTTTTTTCCGTCCCGCAAGGGGGCCGACAC
AGGGGCTTTCCTTGTCTCGTGAAGTGGCGGCCTTTGTCGGGGCGACTGGA
AAGATCGACGTCTTCGACGGGCGCACCCTGTGCTGGCTGTCGTACGAGGT
GGGCGGGCGACGCTTGTTCGCTTTGGTGGTGGTGGTGGTTTGCCCTGTTG
TACTTGTTGTTGATGTCTTCACACTGAAAAAACTCTTTCCGATCTCTCCA
TCCAGCACCTCCACGAGTCCGTACTAATCCAACACTGGCTGTCGCGGTCG
ATTCCCGTGGTCACAGGAGATAGCTTACCCTCTAGAAAAAGGTGTACTGA
AAAAAAGAAAGATCTAGGTTTGGTATGGTGATGCTGCCGTAGTTAGCGGT
GGTGATGGTGATGGTGATAGTGATAGAGTTGTTGTGCTCTTCGCCTCCCC
TGACCCTCACCTGCTCGGCTTCGGGCTCCTCCCCCTCTGGTGGTGACCGG
ATATCCGATCATTATGCACATACTTACTTTACTCCCACAAAAAAAGATTC
CGTGGACAAGAGAAAAAAAAACACGAACTACTACCGTTGTTGCGCGGCTT
GCTGATTTGTGTGCCAGTAGTCCGGAACGGTTTTTAACGTGAAGCCAACA
CAGCAGTCCGGGGCGGTGAGGGGGGGTTAATGTGTCTACAGCGGTCCCCC
TGGATCGCCTCTTTTCATTTTTCACAGGTTGGACGTACGTAAGACCGTCG
AGTTTTGTAGACATTTTTTTTATAGATTAGGCAAACGTCCTCCTCTGCCA
AAGTGTCCTGCTATCTTTGCCGCGTGCGTCTCCGTTGCTCCGCCCCGAGC
TGCTGTGCGTTACGTCGACCACTCTCTGAAAAAGCGACTGAAACCGTGAA
AATCACTCCTCAGCCTCAGCGGTGCCCCCCCCCCCCCCCCCCCGCCTCCT
CCCACATTAAAACATGGTGTGCAATTCGTGTGTTCGGTGTCTGTCCGTGT
GGTGTGTTATTGCTTGCGCGTGACAAAACACGCAATAGGCGGAAGGGTTC
CTGCCGGGCACCGGCGTCGTCGGAAGATCCGCGAAATGGTTCTTCGACGG
GGCCTCCCCGGGTTTCCAGCCTAGCGGCGGTGGGAGTGCGGAGGAAGAGG
CGTCGGCGTTTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11332:1522..5985+

>mRNA_L-elsbetiae_contig11332.1178.1 ID=mRNA_L-elsbetiae_contig11332.1178.1|Name=mRNA_L-elsbetiae_contig11332.1178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig11332:1522..5985+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCCCAAATCTCCAGCCTCTCCGTCCCACGCCTCCCTAACCCTCCACG
GTTCGAGATGACGTCATGCTGCTTCAAGCACCAGTGCGTCTTCGCTGGAG
GACGGCAGCCCCAAATCTCCAGCCTCTCCGTCCCACGCCTCCCTAACCCT
CCACGGTTCGAGATGACGTCATGCTGCTTCAAGCACCAGTGCGTCTTCGC
TGGAGGACGGGTTTCGATGGGGCAGGGAGGCGTCGGCTTCAACAGCGACC
GCGCGGAGGTTTGGGACGGGGCCACGTGGAGCTTCGCGACGTGGGGGGAG
CACACGCTGTCCGAGCCGCGGCACCTCATGGGGTCCGCGGTGATCGAGAT
TTCTGGCGGCGCGGTTTCGATGGGGCAGGGAGGCGTCGGCTTCAACAGCG
ACCGCGCGGAGGTTTGGGACGGGGCCACGTGGAGCTTCGCGACGTGGGGG
GAGCACACGCTGTCCGAGCCGCGGCACCTCATGGGGTCCGCGGTGATCGA
GATTTCTGGCGGCGCGCGGACGCGAACAGTCGGCTTTTTCGCCGGAGGCG
TTTCCAACACGGGGGACTCGTCCATGGTGGACATGTTCGACTTCGACGAG
CGGAGGGTGCTGCCAAGGATGTACGCCCCGACGGTCAGCGGACGCGAACA
GTCGGCTTTTTCGCCGGAGGCGTTTCCAACACGGGGGACTCGTCCATGGT
GGACATGTTCGACTTCGACGAGCGGAGGGTGCTGCCAAGGATGTACGCCC
CGACGGTCAGGGGGCCGACACAGGGGCTTTCCTTGTCTCGTGAAGTGGCG
GCCTTTGTCGGGGCGACTGGAAAGATCGACGTCTTCGACGGGCGCACCCT
GTGCTGGCTGTCGTACGAGGGGGCCGACACAGGGGCTTTCCTTGTCTCGT
GAAGTGGCGGCCTTTGTCGGGGCGACTGGAAAGATCGACGTCTTCGACGG
GCGCACCCTGTGCTGGCTGTCGTACGAGGCGGAAGGGTTCCTGCCGGGCA
CCGGCGTCGTCGGAAGATCCGCGAAATGGTTCTTCGACGGGGCCTCCCCG
GGTTTCCAGCCTAGCGGCGGTGGGAGTGCGGAGGAAGAGGCGTCGGCGTT
TGTGGCGGAAGGGTTCCTGCCGGGCACCGGCGTCGTCGGAAGATCCGCGA
AATGGTTCTTCGACGGGGCCTCCCCGGGTTTCCAGCCTAGCGGCGGTGGG
AGTGCGGAGGAAGAGGCGTCGGCGTTTGTG
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