mRNA_L-elsbetiae_contig11330.1177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11330.1177.1
Unique NamemRNA_L-elsbetiae_contig11330.1177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11330.1177.1 vs. uniprot
Match: D8LCI2_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.660e-17
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 MPTWRCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSK 126
            M TWRCGHPGC KHSSYGVKG+KEREFCGRHAK GMVDVRSK
Sbjct:    1 MVTWRCGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRSK 42
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BLAST of mRNA_L-elsbetiae_contig11330.1177.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.960e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   13 RCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSK 126
            +CGH  C K  +YGV GSK+REFC +HA+DGMV+V +K
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 40
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BLAST of mRNA_L-elsbetiae_contig11330.1177.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.530e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   13 RCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSK 126
            +CGH  C K  +YGV GSK+REFC +HA+DGMV+V +K
Sbjct:   63 QCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11330.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCI2_ECTSI2.660e-1790.48EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2... [more]
D7FI73_ECTSI2.960e-660.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE3.530e-660.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11330contigL-elsbetiae_contig11330:1954..2697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-26_005130.1
Exons1
Model size744
Cds size744
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.415216-CDS-L-elsbetiae_contig11330:1953..26971622815343.415216-CDS-L-elsbetiae_contig11330:1953..2697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11330 1954..2697 -
1691682850.2153287-CDS-L-elsbetiae_contig11330:1953..26971691682850.2153287-CDS-L-elsbetiae_contig11330:1953..2697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11330 1954..2697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11330.1177.1prot_L-elsbetiae_contig11330.1177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11330 1954..2697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11330.1177.1

>prot_L-elsbetiae_contig11330.1177.1 ID=prot_L-elsbetiae_contig11330.1177.1|Name=mRNA_L-elsbetiae_contig11330.1177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MPTWRCGHPGCDKHSSYGVKGSKEREFCGRHAKDGMVDVRSKRCGQEGCE
KHPSFGKNGSKKAEFCAQHAKEGMVNVSNKRCGHAGCTTRASFGVEGTKR
AEFCAQHAKDGMVDVWSKRNRCGHPECITRASYAANGSKKGEFCARHAKA
GMINVNNKKKKGEQDARWFGTEGGEEEGHESAGGVNGGMGGIEELLKRSG
SYTVAAAAAGAKRSRPVATLLPEESAEETAAAARLFMGLRMARRKVDD
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mRNA from alignment at L-elsbetiae_contig11330:1954..2697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11330.1177.1 ID=mRNA_L-elsbetiae_contig11330.1177.1|Name=mRNA_L-elsbetiae_contig11330.1177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig11330:1954..2697- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGACCTGGAGGTGCGGTCACCCGGGCTGCGACAAGCACTCGTCTTA
CGGCGTGAAGGGCAGCAAGGAGCGCGAGTTCTGCGGCCGACATGCGAAAG
ATGGGATGGTTGACGTGAGAAGCAAGAGATGCGGCCAGGAGGGCTGCGAG
AAGCACCCGTCGTTCGGCAAAAACGGGAGCAAAAAGGCGGAATTCTGCGC
GCAGCACGCAAAGGAGGGGATGGTCAACGTTAGCAACAAGAGGTGCGGCC
ACGCCGGATGCACGACGCGCGCGAGCTTCGGGGTGGAGGGGACCAAGCGG
GCGGAATTCTGCGCACAGCATGCCAAGGACGGAATGGTCGACGTCTGGAG
CAAGAGGAACCGCTGCGGCCACCCGGAGTGCATCACCCGAGCGAGCTACG
CGGCGAACGGAAGCAAGAAAGGAGAGTTCTGCGCCCGGCACGCCAAGGCC
GGCATGATAAACGTCAACAACAAGAAGAAGAAGGGGGAGCAGGACGCGCG
GTGGTTCGGCACTGAGGGGGGGGAGGAGGAGGGGCACGAGTCGGCCGGCG
GCGTGAACGGCGGGATGGGCGGGATCGAGGAGCTGCTTAAGAGATCCGGG
AGCTACACGGTGGCGGCGGCGGCGGCGGGCGCGAAGCGAAGCCGCCCGGT
CGCCACGCTGCTCCCGGAAGAGTCCGCCGAGGAAACCGCCGCCGCGGCCC
GGCTGTTCATGGGGCTGAGAATGGCACGGAGGAAGGTGGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11330:1954..2697-

>mRNA_L-elsbetiae_contig11330.1177.1 ID=mRNA_L-elsbetiae_contig11330.1177.1|Name=mRNA_L-elsbetiae_contig11330.1177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig11330:1954..2697- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGACCTGGAGGTGCGGTCACCCGGGCTGCGACAAGCACTCGTCTTA
CGGCGTGAAGGGCAGCAAGGAGCGCGAGTTCTGCGGCCGACATGCGAAAG
ATGGGATGGTTGACGTGAGAAGCAAGAGATGCGGCCAGGAGGGCTGCGAG
AAGCACCCGTCGTTCGGCAAAAACGGGAGCAAAAAGGCGGAATTCTGCGC
GCAGCACGCAAAGGAGGGGATGGTCAACGTTAGCAACAAGAGGTGCGGCC
ACGCCGGATGCACGACGCGCGCGAGCTTCGGGGTGGAGGGGACCAAGCGG
GCGGAATTCTGCGCACAGCATGCCAAGGACGGAATGGTCGACGTCTGGAG
CAAGAGGAACCGCTGCGGCCACCCGGAGTGCATCACCCGAGCGAGCTACG
CGGCGAACGGAAGCAAGAAAGGAGAGTTCTGCGCCCGGCACGCCAAGGCC
GGCATGATAAACGTCAACAACAAGAAGAAGAAGGGGGAGCAGGACGCGCG
GTGGTTCGGCACTGAGGGGGGGGAGGAGGAGGGGCACGAGTCGGCCGGCG
GCGTGAACGGCGGGATGGGCGGGATCGAGGAGCTGCTTAAGAGATCCGGG
AGCTACACGGTGGCGGCGGCGGCGGCGGGCGCGAAGCGAAGCCGCCCGGT
CGCCACGCTGCTCCCGGAAGAGTCCGCCGAGGAAACCGCCGCCGCGGCCC
GGCTGTTCATGGGGCTGAGAATGGCACGGAGGAAGGTGGACGACATGCCG
ACCTGGAGGTGCGGTCACCCGGGCTGCGACAAGCACTCGTCTTACGGCGT
GAAGGGCAGCAAGGAGCGCGAGTTCTGCGGCCGACATGCGAAAGATGGGA
TGGTTGACGTGAGAAGCAAGAGATGCGGCCAGGAGGGCTGCGAGAAGCAC
CCGTCGTTCGGCAAAAACGGGAGCAAAAAGGCGGAATTCTGCGCGCAGCA
CGCAAAGGAGGGGATGGTCAACGTTAGCAACAAGAGGTGCGGCCACGCCG
GATGCACGACGCGCGCGAGCTTCGGGGTGGAGGGGACCAAGCGGGCGGAA
TTCTGCGCACAGCATGCCAAGGACGGAATGGTCGACGTCTGGAGCAAGAG
GAACCGCTGCGGCCACCCGGAGTGCATCACCCGAGCGAGCTACGCGGCGA
ACGGAAGCAAGAAAGGAGAGTTCTGCGCCCGGCACGCCAAGGCCGGCATG
ATAAACGTCAACAACAAGAAGAAGAAGGGGGAGCAGGACGCGCGGTGGTT
CGGCACTGAGGGGGGGGAGGAGGAGGGGCACGAGTCGGCCGGCGGCGTGA
ACGGCGGGATGGGCGGGATCGAGGAGCTGCTTAAGAGATCCGGGAGCTAC
ACGGTGGCGGCGGCGGCGGCGGGCGCGAAGCGAAGCCGCCCGGTCGCCAC
GCTGCTCCCGGAAGAGTCCGCCGAGGAAACCGCCGCCGCGGCCCGGCTGT
TCATGGGGCTGAGAATGGCACGGAGGAAGGTGGACGAC
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