mRNA_L-elsbetiae_contig11321.1174.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11321.1174.1
Unique NamemRNA_L-elsbetiae_contig11321.1174.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Match: A0A6H5JHP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.020e-28
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIPQSRAHISGAPSAMGKAD 201
            DTWVGRFVRITTPRH GTTGLVHRTGNGWVNLQT+LGDVAKRAYDLVVIP+ RA++ G+   M KAD
Sbjct:  115 DTWVGRFVRITTPRHNGTTGLVHRTGNGWVNLQTALGDVAKRAYDLVVIPEERANV-GSIGGMLKAD 180
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BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Match: D8LBE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE8_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.470e-28
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIPQSRAHISGAPSAMGKAD 201
            DTWVGRFVRITTPRH GTTGLVHRTGNGWVNLQT+LGDVAKRAYDLVVIP+ RA+I G+   M KAD
Sbjct:   91 DTWVGRFVRITTPRHNGTTGLVHRTGNGWVNLQTALGDVAKRAYDLVVIPEERANI-GSIGGMLKAD 156
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BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Match: A0A7R9UGB2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGB2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.560e-11
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIPQS 156
            D W+ + VRI   R  G TG V R+GNGWV LQT++G+VAKRAY+L ++P S
Sbjct:  115 DVWINKLVRIKGGRFTGHTGRVLRSGNGWVQLQTAMGEVAKRAYELQLLPSS 166
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BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Match: A0A7S3M8E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8E2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.670e-11
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIPQSRAHISGAPSAMG 192
            ++WVG+ V++ + RH G  G V  +GNGWV ++TS+G+VAKRAY+L V+     H  GA S  G
Sbjct:  207 ESWVGQRVQVASGRHAGQQGTVVSSGNGWVQIETSVGEVAKRAYELQVVSH---HSGGAASTQG 267
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BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Match: A0A6U4F2P5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F2P5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.440e-10
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIPQS 156
            +TW  + V+I   R  G TG V R+GNGWV LQT++G+VAKRAY+L ++P S
Sbjct:  106 ETWNNKMVKIKAGRFTGHTGRVLRSGNGWVQLQTAMGEVAKRAYELQLLPAS 157
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BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Match: A0A7S4E8A6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8A6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.490e-8
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIPQSRA 162
            + WVG  VR+   R  G  G + R+GNGWV L+T+ G++AKRAY+L ++ +  A
Sbjct:  195 ERWVGTHVRVRVGRLGGQVGRILRSGNGWVQLRTARGEIAKRAYELELVDEKDA 248
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BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Match: A0A835Z2T4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-7
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIPQSRAHISG 174
            + W G FV+I   + KG  G V R+GNGWVNL T LG+ A RA DL++  +  A  +G
Sbjct:  252 ELWPGCFVKILAGKLKGKVGKVLRSGNGWVNLMTQLGEKATRAGDLLLALEQPAKRTG 309
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11321.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JHP0_9PHAE2.020e-2882.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBE8_ECTSI2.470e-2883.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UGB2_9STRA1.560e-1155.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3M8E2_9STRA5.670e-1146.88Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6U4F2P5_9STRA1.440e-1053.85Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S4E8A6_9STRA5.490e-844.44Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A835Z2T4_9STRA2.640e-746.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11321contigL-elsbetiae_contig11321:734..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.0468483-CDS-L-elsbetiae_contig11321:733..9341622815343.0468483-CDS-L-elsbetiae_contig11321:733..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11321 734..934 +
1691682850.0253665-CDS-L-elsbetiae_contig11321:733..9341691682850.0253665-CDS-L-elsbetiae_contig11321:733..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11321 734..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11321.1174.1prot_L-elsbetiae_contig11321.1174.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11321 734..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11321.1174.1

>prot_L-elsbetiae_contig11321.1174.1 ID=prot_L-elsbetiae_contig11321.1174.1|Name=mRNA_L-elsbetiae_contig11321.1174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
DTWVGRFVRITTPRHKGTTGLVHRTGNGWVNLQTSLGDVAKRAYDLVVIP
QSRAHISGAPSAMGKAD
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mRNA from alignment at L-elsbetiae_contig11321:734..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11321.1174.1 ID=mRNA_L-elsbetiae_contig11321.1174.1|Name=mRNA_L-elsbetiae_contig11321.1174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=201bp|location=Sequence derived from alignment at L-elsbetiae_contig11321:734..934+ (Laminarionema elsbetiae ELsaHSoW15)
GACACATGGGTCGGGCGCTTCGTGCGTATCACCACACCGAGGCACAAAGG
TACCACAGGCCTCGTTCACAGGACAGGAAACGGGTGGGTGAACCTTCAGA
CGTCACTGGGAGACGTTGCCAAGCGCGCGTACGATCTAGTCGTGATCCCT
CAGTCCAGAGCCCATATCAGTGGCGCCCCCAGCGCTATGGGGAAAGCAGA
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11321:734..934+

>mRNA_L-elsbetiae_contig11321.1174.1 ID=mRNA_L-elsbetiae_contig11321.1174.1|Name=mRNA_L-elsbetiae_contig11321.1174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig11321:734..934+ (Laminarionema elsbetiae ELsaHSoW15)
GACACATGGGTCGGGCGCTTCGTGCGTATCACCACACCGAGGCACAAAGG
TACCACAGGCCTCGTTCACAGGACAGGAAACGGGTGGGTGAACCTTCAGA
CGTCACTGGGAGACGTTGCCAAGCGCGCGTACGATCTAGTCGTGATCCCT
CAGTCCAGAGCCCATATCAGTGGCGCCCCCAGCGCTATGGGGAAAGCAGA
CGACACATGGGTCGGGCGCTTCGTGCGTATCACCACACCGAGGCACAAAG
GTACCACAGGCCTCGTTCACAGGACAGGAAACGGGTGGGTGAACCTTCAG
ACGTCACTGGGAGACGTTGCCAAGCGCGCGTACGATCTAGTCGTGATCCC
TCAGTCCAGAGCCCATATCAGTGGCGCCCCCAGCGCTATGGGGAAAGCAG
AC
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