mRNA_L-elsbetiae_contig11320.1173.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11320.1173.1
Unique NamemRNA_L-elsbetiae_contig11320.1173.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: A0A6H5KRB3_9PHAE (HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-9
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 VRTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGG 117
            VRTALVDAQSVAALLMTAEAMV DLPEEEAPA P MGGG
Sbjct:  525 VRTALVDAQSVAALLMTAEAMVADLPEEEAPASP-MGGG 562
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: D7FLV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV3_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 3.400e-8
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 RTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGM 123
            RTALVDA+SVAAL +TAEAMV D PEEEA   PPMGGGGM
Sbjct:    2 RTALVDARSVAALQVTAEAMVRDFPEEEA-LEPPMGGGGM 40
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: A0A7S0D0S5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D0S5_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 9.100e-7
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 VRTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGM 123
            VRTAL+DA SVA+L+MTAE +V ++P+E+  A PPMGGGGM
Sbjct:  550 VRTALLDASSVASLMMTAETVVVEIPDEKEAAAPPMGGGGM 590
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: A0A6C0GVR1_9BACT (Chaperonin GroEL n=1 Tax=Rhodocytophaga rosea TaxID=2704465 RepID=A0A6C0GVR1_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-6
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 RTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGM 123
            R AL +A S+AALL+T E +V D PEE APAGPPMGGGGM
Sbjct:  500 RLALENAASIAALLLTTECVVADEPEEHAPAGPPMGGGGM 539
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: A0A2Z4AIT4_9BACT (Chaperonin GroEL n=1 Tax=Candidatus Moanabacter tarae TaxID=2200854 RepID=A0A2Z4AIT4_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 5.960e-6
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 RTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGMXXXXXXXXMM 153
            RT L +A SVA LL+T EA+VTD+PE+EAPAGPP GG  M        MM
Sbjct:  499 RTGLQNAASVAGLLLTTEALVTDIPEKEAPAGPPPGGPDMGGMGGMGGMM 548
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: A0A2P6TKV7_CHLSO (Chaperonin mitochondrial n=2 Tax=Chlorella clade TaxID=2511126 RepID=A0A2P6TKV7_CHLSO)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 VRTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGM 123
            VRTALVDA SVA+LL TAE ++T+ P+E APA P MGG GM
Sbjct:  533 VRTALVDAASVASLLTTAECIITEAPKEAAPAAPGMGGMGM 573
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: A0A662X5K6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5K6_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.640e-5
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 VRTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGG 114
            VRT LVDA SVA+L+MTAEA++ D PEE     PPMGG
Sbjct:   69 VRTGLVDASSVASLMMTAEALIADHPEEAGAGAPPMGG 106
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: E3GKM3_9FIRM (Chaperonin GroEL n=12 Tax=Firmicutes TaxID=1239 RepID=E3GKM3_9FIRM)

HSP 1 Score: 48.5 bits (114), Expect = 3.910e-5
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 RTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGM 123
            RTA+ +A S+ A+ +T E  V DLPEE APA PPMGGGGM
Sbjct:  500 RTAIQNAASICAMFLTTEVAVADLPEEAAPAMPPMGGGGM 539
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BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Match: CH60_BEII9 (Chaperonin GroEL n=4 Tax=Beijerinckiaceae TaxID=45404 RepID=CH60_BEII9)

HSP 1 Score: 47.8 bits (112), Expect = 7.320e-5
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 VRTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGM 123
            VRTAL DA S+A LL+T EA +T+ P++EAP  PPMGGGGM
Sbjct:  501 VRTALQDAASIAGLLITTEATITEAPKKEAPL-PPMGGGGM 540
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11320.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KRB3_9PHAE2.380e-992.31HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D7FLV3_ECTSI3.400e-880.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0D0S5_9EUKA9.100e-765.85Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6C0GVR1_9BACT1.240e-670.00Chaperonin GroEL n=1 Tax=Rhodocytophaga rosea TaxI... [more]
A0A2Z4AIT4_9BACT5.960e-658.00Chaperonin GroEL n=1 Tax=Candidatus Moanabacter ta... [more]
A0A2P6TKV7_CHLSO1.530e-568.29Chaperonin mitochondrial n=2 Tax=Chlorella clade T... [more]
A0A662X5K6_9STRA2.640e-565.79Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
E3GKM3_9FIRM3.910e-562.50Chaperonin GroEL n=12 Tax=Firmicutes TaxID=1239 Re... [more]
CH60_BEII97.320e-565.85Chaperonin GroEL n=4 Tax=Beijerinckiaceae TaxID=45... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11320contigL-elsbetiae_contig11320:4297..4452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue7.7e-10
Seed eggNOG ortholog2880.D7FLV5
Preferred nameHSP60
KEGG koko:K02940,ko:K04077
KEGG Pathwayko03010,ko03018,ko04212,ko04940,ko05134,ko05152,map03010,map03018,map04212,map04940,map05134,map05152
KEGG ModuleM00177
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000166,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009408,GO:0009416,GO:0009453,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0017076,GO:0019899,GO:0019954,GO:0022626,GO:0030554,GO:0030587,GO:0031090,GO:0031288,GO:0031967,GO:0031974,GO:0031975,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0042788,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044183,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046686,GO:0046872,GO:0046907,GO:0046914,GO:0046956,GO:0048856,GO:0050896,GO:0051082,GO:0051117,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0052128,GO:0055085,GO:0061077,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090702,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1990542,GO:1990904
EggNOG free text desc.protein refolding
EggNOG OGsCOG0459@1,KOG0356@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03029,ko03110,ko04147
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001120.1
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.0059087-CDS-L-elsbetiae_contig11320:4296..44521622815343.0059087-CDS-L-elsbetiae_contig11320:4296..4452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11320 4297..4452 +
1691682850.0144322-CDS-L-elsbetiae_contig11320:4296..44521691682850.0144322-CDS-L-elsbetiae_contig11320:4296..4452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11320 4297..4452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11320.1173.1prot_L-elsbetiae_contig11320.1173.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11320 4297..4452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11320.1173.1

>prot_L-elsbetiae_contig11320.1173.1 ID=prot_L-elsbetiae_contig11320.1173.1|Name=mRNA_L-elsbetiae_contig11320.1173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
VRTALVDAQSVAALLMTAEAMVTDLPEEEAPAGPPMGGGGMGGMGGMPGM
M*
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mRNA from alignment at L-elsbetiae_contig11320:4297..4452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11320.1173.1 ID=mRNA_L-elsbetiae_contig11320.1173.1|Name=mRNA_L-elsbetiae_contig11320.1173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig11320:4297..4452+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCGCACCGCGCTAGTAGACGCCCAGAGCGTAGCCGCTCTTCTCATGAC
CGCCGAGGCCATGGTAACGGATCTGCCAGAGGAGGAGGCACCCGCCGGTC
CGCCGATGGGAGGAGGGGGGATGGGAGGCATGGGGGGCATGCCTGGCATG
ATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11320:4297..4452+

>mRNA_L-elsbetiae_contig11320.1173.1 ID=mRNA_L-elsbetiae_contig11320.1173.1|Name=mRNA_L-elsbetiae_contig11320.1173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig11320:4297..4452+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCGCACCGCGCTAGTAGACGCCCAGAGCGTAGCCGCTCTTCTCATGAC
CGCCGAGGCCATGGTAACGGATCTGCCAGAGGAGGAGGCACCCGCCGGTC
CGCCGATGGGAGGAGGGGGGATGGGAGGCATGGGGGGCATGCCTGGCATG
ATGTGAGTGCGCACCGCGCTAGTAGACGCCCAGAGCGTAGCCGCTCTTCT
CATGACCGCCGAGGCCATGGTAACGGATCTGCCAGAGGAGGAGGCACCCG
CCGGTCCGCCGATGGGAGGAGGGGGGATGGGAGGCATGGGGGGCATGCCT
GGCATGATGTGA
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