mRNA_L-elsbetiae_contig11320.1172.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11320.1172.1
Unique NamemRNA_L-elsbetiae_contig11320.1172.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11320.1172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11320contigL-elsbetiae_contig11320:2031..2739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size709
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11320.1172.1prot_L-elsbetiae_contig11320.1172.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11320 2062..2460 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.9401395-UTR-L-elsbetiae_contig11320:2030..20611622815342.9401395-UTR-L-elsbetiae_contig11320:2030..2061Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11320 2031..2061 +
1691682849.9872031-UTR-L-elsbetiae_contig11320:2030..20611691682849.9872031-UTR-L-elsbetiae_contig11320:2030..2061Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11320 2031..2061 +
1622815342.9645567-UTR-L-elsbetiae_contig11320:2460..27391622815342.9645567-UTR-L-elsbetiae_contig11320:2460..2739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11320 2461..2739 +
1691682850.005338-UTR-L-elsbetiae_contig11320:2460..27391691682850.005338-UTR-L-elsbetiae_contig11320:2460..2739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11320 2461..2739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.9530423-CDS-L-elsbetiae_contig11320:2061..24601622815342.9530423-CDS-L-elsbetiae_contig11320:2061..2460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11320 2062..2460 +
1691682849.9966226-CDS-L-elsbetiae_contig11320:2061..24601691682849.9966226-CDS-L-elsbetiae_contig11320:2061..2460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11320 2062..2460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11320.1172.1

>prot_L-elsbetiae_contig11320.1172.1 ID=prot_L-elsbetiae_contig11320.1172.1|Name=mRNA_L-elsbetiae_contig11320.1172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MFIFSWRILMPLSLPQGMYGYGVCAPCMVLPVGKYVLPEVVLATPCRSAC
FPEAMLKYVKIWLSLGVRVWGAVYRKPRTGTGLFRRPSRLATHVATKQVL
TRVTDCSVARCPRAHNRHFPQQLHSVAHLEQQ*
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mRNA from alignment at L-elsbetiae_contig11320:2031..2739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11320.1172.1 ID=mRNA_L-elsbetiae_contig11320.1172.1|Name=mRNA_L-elsbetiae_contig11320.1172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=709bp|location=Sequence derived from alignment at L-elsbetiae_contig11320:2031..2739+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCAATCGTCACCCGCGCCGCGGCTGTGGTATGTTCATATTTAGCTGGA
GAATTTTAATGCCTCTTAGCCTACCGCAGGGTATGTATGGATACGGCGTG
TGTGCGCCCTGCATGGTCTTGCCCGTAGGAAAATATGTTTTGCCCGAGGT
TGTCTTGGCGACCCCATGCAGAAGCGCCTGCTTCCCTGAAGCTATGTTGA
AATATGTTAAGATCTGGCTGTCCCTGGGTGTAAGGGTCTGGGGGGCTGTT
TATCGCAAGCCACGCACTGGAACCGGGCTTTTCAGGAGACCTTCAAGGCT
GGCGACGCACGTGGCGACGAAGCAAGTTCTGACTCGGGTGACGGACTGTT
CTGTCGCACGGTGTCCACGCGCGCACAACCGCCACTTCCCTCAGCAACTC
CATAGTGTTGCGCATCTCGAACAGCAGTAAAAAGGCATCACGTTCTGGAC
AGCTACATAGCTGTTCTTATCTGGCTGTTTTCTGTGTGTGTGTTTATGAC
GGTGGCAAACACACACACGCGGAAGCCGGCGCAACCTTTTTTTGGCGCCG
GCCCTTTGTTTCTACCCCCGGTATCGAACTATTTGAATCGTTGAAAACGC
TTCAAGTCGGGTAGAACAGCATGCAGGTTGTCGGCGCTTGGTTCGCTCTC
TTGCTTCACCCCCCGAATTGTACTGCTTCATGAGCAGCGCCTGAAAGGGA
ATAGGGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11320:2031..2739+

>mRNA_L-elsbetiae_contig11320.1172.1 ID=mRNA_L-elsbetiae_contig11320.1172.1|Name=mRNA_L-elsbetiae_contig11320.1172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig11320:2031..2739+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCATATTTAGCTGGAGAATTTTAATGCCTCTTAGCCTACCGCAGGG
TATGTATGGATACGGCGTGTGTGCGCCCTGCATGGTCTTGCCCGTAGGAA
AATATGTTTTGCCCGAGGTTGTCTTGGCGACCCCATGCAGAAGCGCCTGC
TTCCCTGAAGCTATGTTGAAATATGTTAAGATCTGGCTGTCCCTGGGTGT
AAGGGTCTGGGGGGCTGTTTATCGCAAGCCACGCACTGGAACCGGGCTTT
TCAGGAGACCTTCAAGGCTGGCGACGCACGTGGCGACGAAGCAAGTTCTG
ACTCGGGTGACGGACTGTTCTGTCGCACGGTGTCCACGCGCGCACAACCG
CCACTTCCCTCAGCAACTCCATAGTGTTGCGCATCTCGAACAGCAGTAAA
TGTTCATATTTAGCTGGAGAATTTTAATGCCTCTTAGCCTACCGCAGGGT
ATGTATGGATACGGCGTGTGTGCGCCCTGCATGGTCTTGCCCGTAGGAAA
ATATGTTTTGCCCGAGGTTGTCTTGGCGACCCCATGCAGAAGCGCCTGCT
TCCCTGAAGCTATGTTGAAATATGTTAAGATCTGGCTGTCCCTGGGTGTA
AGGGTCTGGGGGGCTGTTTATCGCAAGCCACGCACTGGAACCGGGCTTTT
CAGGAGACCTTCAAGGCTGGCGACGCACGTGGCGACGAAGCAAGTTCTGA
CTCGGGTGACGGACTGTTCTGTCGCACGGTGTCCACGCGCGCACAACCGC
CACTTCCCTCAGCAACTCCATAGTGTTGCGCATCTCGAACAGCAGTAA
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