mRNA_L-elsbetiae_contig11308.1166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11308.1166.1
Unique NamemRNA_L-elsbetiae_contig11308.1166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11308.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11308contigL-elsbetiae_contig11308:1514..2055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size542
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11308.1166.1prot_L-elsbetiae_contig11308.1166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11308 1529..1942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.4896374-UTR-L-elsbetiae_contig11308:1513..15281622815342.4896374-UTR-L-elsbetiae_contig11308:1513..1528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11308 1514..1528 +
1691682849.676489-UTR-L-elsbetiae_contig11308:1513..15281691682849.676489-UTR-L-elsbetiae_contig11308:1513..1528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11308 1514..1528 +
1622815342.5177634-UTR-L-elsbetiae_contig11308:1942..20551622815342.5177634-UTR-L-elsbetiae_contig11308:1942..2055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11308 1943..2055 +
1691682849.6998777-UTR-L-elsbetiae_contig11308:1942..20551691682849.6998777-UTR-L-elsbetiae_contig11308:1942..2055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11308 1943..2055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.504985-CDS-L-elsbetiae_contig11308:1528..19421622815342.504985-CDS-L-elsbetiae_contig11308:1528..1942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11308 1529..1942 +
1691682849.686524-CDS-L-elsbetiae_contig11308:1528..19421691682849.686524-CDS-L-elsbetiae_contig11308:1528..1942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11308 1529..1942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11308.1166.1

>prot_L-elsbetiae_contig11308.1166.1 ID=prot_L-elsbetiae_contig11308.1166.1|Name=mRNA_L-elsbetiae_contig11308.1166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MVERCTPPSAPSGFTRSRWRFFPMRPMRGGQRRRRTARRRGQQMKRMATT
LWRSKTPMTATPPTLSGRQEDERYSRMGMDSFTMLRRFWLIRARETEMLF
VRVVSVDNDEVHVLGEPRCSIAVRFDRMVYQIAERDG*
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mRNA from alignment at L-elsbetiae_contig11308:1514..2055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11308.1166.1 ID=mRNA_L-elsbetiae_contig11308.1166.1|Name=mRNA_L-elsbetiae_contig11308.1166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=542bp|location=Sequence derived from alignment at L-elsbetiae_contig11308:1514..2055+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCCACGGAAAAATGGTCGAAAGGTGTACTCCGCCTTCGGCCCCCTC
GGGCTTTACCCGTTCGCGCTGGCGATTTTTTCCGATGAGGCCAATGCGGG
GGGGACAGAGGAGACGAAGAACAGCGAGGAGGCGGGGGCAGCAAATGAAG
AGGATGGCGACGACACTATGGAGATCGAAGACGCCAATGACGGCTACACC
GCCGACACTCAGCGGGCGTCAGGAGGATGAGAGATACTCACGGATGGGGA
TGGATTCCTTCACTATGTTGAGGCGTTTTTGGCTGATAAGAGCGAGAGAG
ACAGAGATGCTTTTCGTGCGGGTCGTTTCGGTAGACAACGATGAAGTTCA
TGTCTTGGGCGAGCCCCGATGCAGTATCGCAGTGAGGTTCGATCGGATGG
TTTACCAAATAGCCGAACGGGATGGGTAACAATGTATAAAGGCGTGTTCA
ACGCCAGCAAGCACCACCCTTGTAGGGGAAACTGATTTAATTTATTGGTG
TGTCTGCAGCGGAAAAGTAGACTGATCACGTTTGGAACTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11308:1514..2055+

>mRNA_L-elsbetiae_contig11308.1166.1 ID=mRNA_L-elsbetiae_contig11308.1166.1|Name=mRNA_L-elsbetiae_contig11308.1166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig11308:1514..2055+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGAAAGGTGTACTCCGCCTTCGGCCCCCTCGGGCTTTACCCGTTC
GCGCTGGCGATTTTTTCCGATGAGGCCAATGCGGGGGGGACAGAGGAGAC
GAAGAACAGCGAGGAGGCGGGGGCAGCAAATGAAGAGGATGGCGACGACA
CTATGGAGATCGAAGACGCCAATGACGGCTACACCGCCGACACTCAGCGG
GCGTCAGGAGGATGAGAGATACTCACGGATGGGGATGGATTCCTTCACTA
TGTTGAGGCGTTTTTGGCTGATAAGAGCGAGAGAGACAGAGATGCTTTTC
GTGCGGGTCGTTTCGGTAGACAACGATGAAGTTCATGTCTTGGGCGAGCC
CCGATGCAGTATCGCAGTGAGGTTCGATCGGATGGTTTACCAAATAGCCG
AACGGGATGGGTAAATGGTCGAAAGGTGTACTCCGCCTTCGGCCCCCTCG
GGCTTTACCCGTTCGCGCTGGCGATTTTTTCCGATGAGGCCAATGCGGGG
GGGACAGAGGAGACGAAGAACAGCGAGGAGGCGGGGGCAGCAAATGAAGA
GGATGGCGACGACACTATGGAGATCGAAGACGCCAATGACGGCTACACCG
CCGACACTCAGCGGGCGTCAGGAGGATGAGAGATACTCACGGATGGGGAT
GGATTCCTTCACTATGTTGAGGCGTTTTTGGCTGATAAGAGCGAGAGAGA
CAGAGATGCTTTTCGTGCGGGTCGTTTCGGTAGACAACGATGAAGTTCAT
GTCTTGGGCGAGCCCCGATGCAGTATCGCAGTGAGGTTCGATCGGATGGT
TTACCAAATAGCCGAACGGGATGGGTAA
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