mRNA_L-elsbetiae_contig11307.1165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11307.1165.1
Unique NamemRNA_L-elsbetiae_contig11307.1165.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11307.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11307contigL-elsbetiae_contig11307:608..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2097
Cds size1599
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11307.1165.1prot_L-elsbetiae_contig11307.1165.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11307 1085..3198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.4143405-UTR-L-elsbetiae_contig11307:607..10841622815342.4143405-UTR-L-elsbetiae_contig11307:607..1084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11307 608..1084 -
1691682849.6368515-UTR-L-elsbetiae_contig11307:607..10841691682849.6368515-UTR-L-elsbetiae_contig11307:607..1084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11307 608..1084 -
1622815342.453877-UTR-L-elsbetiae_contig11307:3198..32191622815342.453877-UTR-L-elsbetiae_contig11307:3198..3219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11307 3199..3219 -
1691682849.6666589-UTR-L-elsbetiae_contig11307:3198..32191691682849.6666589-UTR-L-elsbetiae_contig11307:3198..3219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11307 3199..3219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.4288063-CDS-L-elsbetiae_contig11307:1084..14481622815342.4288063-CDS-L-elsbetiae_contig11307:1084..1448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11307 1085..1448 -
1691682849.6474159-CDS-L-elsbetiae_contig11307:1084..14481691682849.6474159-CDS-L-elsbetiae_contig11307:1084..1448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11307 1085..1448 -
1622815342.4418135-CDS-L-elsbetiae_contig11307:1963..31981622815342.4418135-CDS-L-elsbetiae_contig11307:1963..3198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11307 1964..3198 -
1691682849.656947-CDS-L-elsbetiae_contig11307:1963..31981691682849.656947-CDS-L-elsbetiae_contig11307:1963..3198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11307 1964..3198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11307.1165.1

>prot_L-elsbetiae_contig11307.1165.1 ID=prot_L-elsbetiae_contig11307.1165.1|Name=mRNA_L-elsbetiae_contig11307.1165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=533bp
MYGVEGSKTAEFCAGHAKHAMVNVMGKRCGHPSCNKQAVYGVEGSKTAEL
CAAHAKQGMVNIVGKMCGHPSCNKRPTYGVEGSKTKEFCSGHAKQGMVNV
VSRRCGHPSCNKRPTYGVEGSKIAEFCAGHAKQGMVNVEGKRCGHPSCNK
YPVYGVEGSKTAQFCAGHAKQGMVNVMGKRCGHPSCNKQPTHGVESSKTK
EFCAGHAKQGMVKSVGRRCGHPSCNKHPTYGVEGNKTKEFCAGHAKEGMV
NVAAKRCSHPSCNKLPTYGVEGSKTVEFCAGHAKQGMMNVEGKMCGHPSC
NKHPSYGVEGSKTTQFCAGHAKQGMVNLRSGRIFGRETNSAGDVGEGGGP
AVDCTRGRVGERIKRKNRSLPTAEMKIPSTCKRTKRAGAPAVVKVEGDAS
VSALSGIAEAVSSLRVVRCCVSYSVLLSGEPQADRRRDIGREQRRATRKL
CNLLLWATGPTQQSLRNARQEQELCVAALFCALQRCFYSWGTVVTPVNTV
TSYVSDLWGGLRLHWCTCSGRDDRIYFFIGVT*
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mRNA from alignment at L-elsbetiae_contig11307:608..3219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11307.1165.1 ID=mRNA_L-elsbetiae_contig11307.1165.1|Name=mRNA_L-elsbetiae_contig11307.1165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2612bp|location=Sequence derived from alignment at L-elsbetiae_contig11307:608..3219- (Laminarionema elsbetiae ELsaHSoW15)
CCTAGTTGCAACAAGCAGGCGATGTACGGCGTGGAGGGTAGCAAGACAGC
GGAATTCTGTGCTGGACACGCGAAGCATGCAATGGTGAACGTCATGGGCA
AGAGGTGCGGCCACCCTAGTTGCAACAAGCAGGCGGTGTACGGCGTGGAG
GGTAGCAAGACAGCAGAGCTCTGCGCTGCACACGCGAAGCAGGGAATGGT
GAATATCGTGGGCAAGATGTGTGGCCACCCTAGTTGCAACAAGCGCCCGA
CGTATGGCGTGGAGGGTAGCAAGACGAAGGAGTTCTGCTCTGGACACGCG
AAGCAGGGAATGGTGAATGTCGTCAGCAGGAGGTGCGGCCACCCTAGTTG
CAACAAGCGCCCGACGTACGGCGTGGAGGGTAGCAAGATAGCGGAGTTCT
GCGCTGGACACGCGAAGCAGGGAATGGTGAACGTTGAAGGCAAGAGGTGC
GGCCACCCTAGTTGCAACAAGTATCCGGTGTACGGCGTGGAAGGTAGCAA
AACGGCGCAGTTCTGCGCTGGACACGCGAAGCAGGGAATGGTGAACGTCA
TGGGCAAGAGGTGCGGCCACCCTAGTTGCAACAAGCAGCCGACGCACGGT
GTGGAAAGTAGCAAGACGAAGGAGTTCTGCGCTGGACACGCGAAGCAGGG
GATGGTCAAAAGTGTCGGCAGGAGGTGCGGCCACCCTAGTTGCAACAAGC
ACCCGACGTACGGCGTGGAAGGCAACAAGACGAAGGAGTTCTGTGCCGGA
CACGCGAAGGAGGGAATGGTGAACGTTGCAGCAAAGAGGTGCAGCCACCC
TAGTTGCAACAAGCTCCCGACGTACGGTGTGGAGGGTAGCAAGACAGTGG
AGTTCTGTGCCGGACACGCGAAGCAGGGAATGATGAACGTTGAAGGCAAG
ATGTGCGGCCACCCTAGTTGCAACAAGCACCCGTCGTACGGCGTGGAAGG
TAGCAAAACGACGCAGTTCTGCGCTGGACACGCGAAGCAGGGAATGGTGA
ATCTACGGTCGGGACGGATTTTCGGTCGAGAAACCAACAGTGCCGGCGAC
GTGGGTGAAGGTGGAGGTCCAGCCGTAGATTGCACCAGGGGCCGCGTTGG
AGAGAGGATAAAGCGCAAAAACCGCTCCCTTCCGACAGCAGAAATGAAGA
TCCCCTCCACCTGCAAGCGCACCAAGCGAGCAGGTGCCCCTGCCGTGGTG
AAGGTCGAAGGAGACGCGTCTGTGTCTGCCTTATCGGGTATCGCGGAAGC
GGTCAGGTGCGTTGACAATATCGGTGTGGTTGTTGACGCGAGAATGTAAG
CTCGCGGTTTATTGTTTGCCCTTGCCTGGTGCCTGCTACAATATGGAGGC
GTGAGCAAGGGACTCGGCGGCAAGATATGCTGGTTGTCAATCGATCGCTC
ACCACCGCAAACTGTGCTCTTCTGTGCATTTGATAGTTAGGTCGGGGTTG
CAGATCGAGAGCTCCAGATTATTTTCTCGGTACCATGTTTGGGACGTGCT
GCCGGTGCTGACTTGTCTTTGAAGTCGAACACGCCGCTCTACTGTGTTGT
AGCACGCAACACAATCTACTGTGCTGCCAGTTGATTGCGACCTCAGATGT
GCTGGTCGCGGCGTGTACGGTTGAACCTTCCGTTGTCTGGAGCTGGATTA
TGCATCCTACCAGCGATGTTCCTATCTATCGTTCCCATTTCAACATTTCC
GTTGCATGTGCGTGTCTGCCAGCACCGCAGAAACTTTACATCGCACCACT
ACGTCGTGCTTGCTGTCACAGCTCGTTACGTGTCGTGCGCTGCTGTGTTT
CCTATTCTGTCCTCTTGTCAGGCGAACCACAGGCGGACAGAAGAAGAGAT
ATCGGACGGGAGCAGCGCCGAGCTACCCGTAAACTTTGCAACTTGCTCTT
ATGGGCAACGGGCCCAACGCAGCAGAGCTTGCGCAATGCCCGTCAGGAAC
AAGAGCTGTGCGTTGCAGCGCTGTTTTGTGCGTTGCAGCGCTGTTTTTAC
AGCTGGGGCACAGTAGTTACACCGGTTAACACTGTTACTTCGTATGTGTC
TGATCTATGGGGGGGATTGCGGCTGCATTGGTGTACGTGTTCTGGTCGCG
ATGACAGAATATATTTTTTCATCGGAGTTACATAAATGTGTATCATGCGA
TTTGCGAGGCCCGAGTCACCTGTCGACATGCGTGTCAAGTCCTTGTCATT
TGTGTTGAGTTCGAGGACGCGCCGGGTACGCTATATGGAACCGCAGTGCC
TGGACAACAGTACCATGCAGTGTATTGACAGCATAGAGGAGGAGGTACAA
CGATAAAACTTCAAAGAGAACGGCGGCGGCGAATATACTGCTTGTGGCTG
GATTGTTACTGCATGCTTCGAGTTCATGCGAGAACGGTGGTGTTGATGGC
CGTAGAACAGCAACGCGGGTGCCGTGGTACGCTACAGTGTTTCCAGTGAT
AAGCCATTGATTGGTGGTCGATTGCCTTGTATGGCTGAGCACTGTTGTGG
GTTGCGTAGGCTTTAGGGGCGTGGCTGGTTTAGTTATGTTTGTTTCCGCT
TCCGTTACCATGCGCTGCGCGTAGCTAAAGAGTAAGACAGCATGGCATCC
ACTAAGTATACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11307:608..3219-

>mRNA_L-elsbetiae_contig11307.1165.1 ID=mRNA_L-elsbetiae_contig11307.1165.1|Name=mRNA_L-elsbetiae_contig11307.1165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3198bp|location=Sequence derived from alignment at L-elsbetiae_contig11307:608..3219- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGGCGTGGAGGGTAGCAAGACAGCGGAATTCTGTGCTGGACACGC
GAAGCATGCAATGGTGAACGTCATGGGCAAGAGGTGCGGCCACCCTAGTT
GCAACAAGCAGGCGGTGTACGGCGTGGAGGGTAGCAAGACAGCAGAGCTC
TGCGCTGCACACGCGAAGCAGGGAATGGTGAATATCGTGGGCAAGATGTG
TGGCCACCCTAGTTGCAACAAGCGCCCGACGTATGGCGTGGAGGGTAGCA
AGACGAAGGAGTTCTGCTCTGGACACGCGAAGCAGGGAATGGTGAATGTC
GTCAGCAGGAGGTGCGGCCACCCTAGTTGCAACAAGCGCCCGACGTACGG
CGTGGAGGGTAGCAAGATAGCGGAGTTCTGCGCTGGACACGCGAAGCAGG
GAATGGTGAACGTTGAAGGCAAGAGGTGCGGCCACCCTAGTTGCAACAAG
TATCCGGTGTACGGCGTGGAAGGTAGCAAAACGGCGCAGTTCTGCGCTGG
ACACGCGAAGCAGGGAATGGTGAACGTCATGGGCAAGAGGTGCGGCCACC
CTAGTTGCAACAAGCAGCCGACGCACGGTGTGGAAAGTAGCAAGACGAAG
GAGTTCTGCGCTGGACACGCGAAGCAGGGGATGGTCAAAAGTGTCGGCAG
GAGGTGCGGCCACCCTAGTTGCAACAAGCACCCGACGTACGGCGTGGAAG
GCAACAAGACGAAGGAGTTCTGTGCCGGACACGCGAAGGAGGGAATGGTG
AACGTTGCAGCAAAGAGGTGCAGCCACCCTAGTTGCAACAAGCTCCCGAC
GTACGGTGTGGAGGGTAGCAAGACAGTGGAGTTCTGTGCCGGACACGCGA
AGCAGGGAATGATGAACGTTGAAGGCAAGATGTGCGGCCACCCTAGTTGC
AACAAGCACCCGTCGTACGGCGTGGAAGGTAGCAAAACGACGCAGTTCTG
CGCTGGACACGCGAAGCAGGGAATGGTGAATCTACGGTCGGGACGGATTT
TCGGTCGAGAAACCAACAGTGCCGGCGACGTGGGTGAAGGTGGAGGTCCA
GCCGTAGATTGCACCAGGGGCCGCGTTGGAGAGAGGATAAAGCGCAAAAA
CCGCTCCCTTCCGACAGCAGAAATGAAGATCCCCTCCACCTGCAAGCGCA
CCAAGCGAGCAGGTGCCCCTGCCGTGGTGAAGGTCGAAGGAGACGCGTCT
GTGTCTGCCTTATCGGGTATCGCGGAAGCGGTCAGATGTACGGCGTGGAG
GGTAGCAAGACAGCGGAATTCTGTGCTGGACACGCGAAGCATGCAATGGT
GAACGTCATGGGCAAGAGGTGCGGCCACCCTAGTTGCAACAAGCAGGCGG
TGTACGGCGTGGAGGGTAGCAAGACAGCAGAGCTCTGCGCTGCACACGCG
AAGCAGGGAATGGTGAATATCGTGGGCAAGATGTGTGGCCACCCTAGTTG
CAACAAGCGCCCGACGTATGGCGTGGAGGGTAGCAAGACGAAGGAGTTCT
GCTCTGGACACGCGAAGCAGGGAATGGTGAATGTCGTCAGCAGGAGGTGC
GGCCACCCTAGTTGCAACAAGCGCCCGACGTACGGCGTGGAGGGTAGCAA
GATAGCGGAGTTCTGCGCTGGACACGCGAAGCAGGGAATGGTGAACGTTG
AAGGCAAGAGGTGCGGCCACCCTAGTTGCAACAAGTATCCGGTGTACGGC
GTGGAAGGTAGCAAAACGGCGCAGTTCTGCGCTGGACACGCGAAGCAGGG
AATGGTGAACGTCATGGGCAAGAGGTGCGGCCACCCTAGTTGCAACAAGC
AGCCGACGCACGGTGTGGAAAGTAGCAAGACGAAGGAGTTCTGCGCTGGA
CACGCGAAGCAGGGGATGGTCAAAAGTGTCGGCAGGAGGTGCGGCCACCC
TAGTTGCAACAAGCACCCGACGTACGGCGTGGAAGGCAACAAGACGAAGG
AGTTCTGTGCCGGACACGCGAAGGAGGGAATGGTGAACGTTGCAGCAAAG
AGGTGCAGCCACCCTAGTTGCAACAAGCTCCCGACGTACGGTGTGGAGGG
TAGCAAGACAGTGGAGTTCTGTGCCGGACACGCGAAGCAGGGAATGATGA
ACGTTGAAGGCAAGATGTGCGGCCACCCTAGTTGCAACAAGCACCCGTCG
TACGGCGTGGAAGGTAGCAAAACGACGCAGTTCTGCGCTGGACACGCGAA
GCAGGGAATGGTGAATCTACGGTCGGGACGGATTTTCGGTCGAGAAACCA
ACAGTGCCGGCGACGTGGGTGAAGGTGGAGGTCCAGCCGTAGATTGCACC
AGGGGCCGCGTTGGAGAGAGGATAAAGCGCAAAAACCGCTCCCTTCCGAC
AGCAGAAATGAAGATCCCCTCCACCTGCAAGCGCACCAAGCGAGCAGGTG
CCCCTGCCGTGGTGAAGGTCGAAGGAGACGCGTCTGTGTCTGCCTTATCG
GGTATCGCGGAAGCGGTCAGCTCGTTACGTGTCGTGCGCTGCTGTGTTTC
CTATTCTGTCCTCTTGTCAGGCGAACCACAGGCGGACAGAAGAAGAGATA
TCGGACGGGAGCAGCGCCGAGCTACCCGTAAACTTTGCAACTTGCTCTTA
TGGGCAACGGGCCCAACGCAGCAGAGCTTGCGCAATGCCCGTCAGGAACA
AGAGCTGTGCGTTGCAGCGCTGTTTTGTGCGTTGCAGCGCTGTTTTTACA
GCTGGGGCACAGTAGTTACACCGGTTAACACTGTTACTTCGTATGTGTCT
GATCTATGGGGGGGATTGCGGCTGCATTGGTGTACGTGTTCTGGTCGCGA
TGACAGAATATATTTTTTCATCGGAGTTACATAACTCGTTACGTGTCGTG
CGCTGCTGTGTTTCCTATTCTGTCCTCTTGTCAGGCGAACCACAGGCGGA
CAGAAGAAGAGATATCGGACGGGAGCAGCGCCGAGCTACCCGTAAACTTT
GCAACTTGCTCTTATGGGCAACGGGCCCAACGCAGCAGAGCTTGCGCAAT
GCCCGTCAGGAACAAGAGCTGTGCGTTGCAGCGCTGTTTTGTGCGTTGCA
GCGCTGTTTTTACAGCTGGGGCACAGTAGTTACACCGGTTAACACTGTTA
CTTCGTATGTGTCTGATCTATGGGGGGGATTGCGGCTGCATTGGTGTACG
TGTTCTGGTCGCGATGACAGAATATATTTTTTCATCGGAGTTACATAA
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