mRNA_L-elsbetiae_contig11305.1164.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11305.1164.1
Unique NamemRNA_L-elsbetiae_contig11305.1164.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: D8LT70_ECTSI (Trifunctional purine biosynthetic protein adenosine-3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT70_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.360e-33
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = -3 
Query:  823 SASVWDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQ 1047
            S+S WDLPEIFQWLSAAGGL+QEELLRTLNCGVGMVVVVAPE A+EARRLLREAGEEVVLEMGVVEERAGPDAPQ
Sbjct: 1083 SSSAWDLPEIFQWLSAAGGLTQEELLRTLNCGVGMVVVVAPEAAEEARRLLREAGEEVVLEMGVVEERAGPDAPQ 1157
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A7S3XJX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJX6_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 1.520e-15
Identity = 47/81 (58.02%), Postives = 52/81 (64.20%), Query Frame = -3 
Query:  802 ASVWDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQVAYEGRL 1044
            AS W LP +F+WL   G LSQEELLRT N GVGM+VVV P   D   R L  AGE  V  +G V+ RAGPDAPQV   G L
Sbjct:  511 ASGWTLPPVFKWLKETGNLSQEELLRTFNAGVGMIVVVDPAEQDAVVRGLEVAGE-TVFRLGEVQARAGPDAPQVIINGSL 590
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A835YVI3_9STRA (Trifunctional purine biosynthetic protein adenosine-3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.530e-15
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = -3 
Query:  802 ASVWDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQVAYEGRL 1044
            AS W LP +F+WL AAG + QEELLRTLNCG+GMV+V++P+    A+ LL +AGE  +L +G V+ R G D PQV   G +
Sbjct: 1027 ASGWALPPVFKWLKAAGKVPQEELLRTLNCGIGMVLVLSPDKVAAAKELLAQAGETDILRLGTVQARVG-DEPQVIVHGEV 1106
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A355RDS9_9RHOB (Phosphoribosylformylglycinamidine cyclo-ligase (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A355RDS9_9RHOB)

HSP 1 Score: 82.0 bits (201), Expect = 1.830e-15
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = -3 
Query:  802 WDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQVAYEGRL 1035
            W LPE+FQWL+  GGLSQ E+L+T NCG+GMV+VVAPE   +   +L+E GE+V+ E+G V + +G     V Y+G L
Sbjct:   54 WALPELFQWLAQQGGLSQAEMLKTFNCGIGMVLVVAPEAQAQITAMLKEMGEDVI-ELGWVTDHSG-----VQYQGTL 125
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A2W5HF00_9RHOO (Phosphoribosylformylglycinamidine cyclo-ligase (Fragment) n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A2W5HF00_9RHOO)

HSP 1 Score: 83.6 bits (205), Expect = 4.940e-15
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:  811 WDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQVAYE 1035
            W +P +F WL A GG++  EL R  NCG+GMVV+VAPE A+EA RLLR+AGE  V  +G + ER G + PQ+  E
Sbjct:  150 WPMPRLFAWLKALGGIADAELYRVFNCGIGMVVIVAPEHAEEAMRLLRQAGE-TVWRIGEIRERRGTE-PQIRIE 222
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A8J1YNQ9_9TREE (ATP-grasp domain-containing protein n=1 Tax=Tremellales sp. Tagirdzhanova-0007 TaxID=2778382 RepID=A0A8J1YNQ9_9TREE)

HSP 1 Score: 85.9 bits (211), Expect = 1.430e-14
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = -3 
Query:  838 WDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAG 1035
            W+LP +++WL  AGG+   E+ RT NCGVGMV++V PEVADEA R LRE GEE V  MG V E+AG
Sbjct:  735 WELPRMWKWLMQAGGIMPVEMARTFNCGVGMVIIVDPEVADEAMRSLRENGEEGVFVMGSVVEKAG 800
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A5C7ETY5_9PROT (Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A5C7ETY5_9PROT)

HSP 1 Score: 83.6 bits (205), Expect = 2.780e-14
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:  811 WDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQVAYE 1035
            W +P +F WL A GG++  EL R  NCG+GMVV+VAPE A+EA RLLR+AGE  V  +G + ER G + PQ+  E
Sbjct:  276 WPMPRLFAWLKALGGIADAELYRVFNCGIGMVVIVAPEHAEEAMRLLRQAGE-TVWRIGEIRERRGTE-PQIRIE 348
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A0N7LXB9_9RHOB (Phosphoribosylformylglycinamidine cyclo-ligase n=3 Tax=Thalassobius TaxID=335927 RepID=A0A0N7LXB9_9RHOB)

HSP 1 Score: 82.0 bits (201), Expect = 9.160e-14
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = -3 
Query:  802 ETGAGSSASVWDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQVAYEGRL 1065
            + GA    S WDLP +F+WL+A GG+ + E+L+T NCG+GM++VVA E A+   ++L  AGE  V ++G + E     AP VAYEG L
Sbjct:  267 DLGATIDLSSWDLPPVFKWLAATGGMEEAEILKTFNCGIGMILVVAEEEAEALTKVLEAAGE-TVTKLGAITE-----APGVAYEGSL 348
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: A0A177HCJ7_9RHOB (Phosphoribosylformylglycinamidine cyclo-ligase n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A177HCJ7_9RHOB)

HSP 1 Score: 80.9 bits (198), Expect = 2.260e-13
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = -3 
Query:  802 WDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAGPDAPQVAYEGRL 1035
            W LPE+FQWL+  GGLSQ E+L+T NCG+GMV+VVAPE   +   LL E GE  V+E+G V      D P V Y+G L
Sbjct:  276 WALPELFQWLAQQGGLSQAEMLKTFNCGIGMVLVVAPEAQVQITALLSEMGE-CVIELGRV-----TDHPGVQYQGTL 347
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BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Match: PUR5_CHRVO (Phosphoribosylformylglycinamidine cyclo-ligase n=29 Tax=Chromobacterium group TaxID=90153 RepID=PUR5_CHRVO)

HSP 1 Score: 80.1 bits (196), Expect = 4.030e-13
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = -3 
Query:  838 ASVWDLPEIFQWLSAAGGLSQEELLRTLNCGVGMVVVVAPEVADEARRLLREAGEEVVLEMGVVEERAG 1044
            A+ W LP++FQWL   G +  +E+ RT NCG+GMVVVVAPE A++A  LLREAGE  V  +G V ER G
Sbjct:  270 AASWQLPKLFQWLQREGNVDIQEMYRTFNCGIGMVVVVAPEHAEQALALLREAGE-TVYRIGQVRERQG 337
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11305.1164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT70_ECTSI1.360e-3393.33Trifunctional purine biosynthetic protein adenosin... [more]
A0A7S3XJX6_HETAK1.520e-1558.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YVI3_9STRA1.530e-1553.09Trifunctional purine biosynthetic protein adenosin... [more]
A0A355RDS9_9RHOB1.830e-1551.28Phosphoribosylformylglycinamidine cyclo-ligase (Fr... [more]
A0A2W5HF00_9RHOO4.940e-1553.33Phosphoribosylformylglycinamidine cyclo-ligase (Fr... [more]
A0A8J1YNQ9_9TREE1.430e-1460.61ATP-grasp domain-containing protein n=1 Tax=Tremel... [more]
A0A5C7ETY5_9PROT2.780e-1453.33Phosphoribosylformylglycinamidine cyclo-ligase n=2... [more]
A0A0N7LXB9_9RHOB9.160e-1446.59Phosphoribosylformylglycinamidine cyclo-ligase n=3... [more]
A0A177HCJ7_9RHOB2.260e-1353.85Phosphoribosylformylglycinamidine cyclo-ligase n=4... [more]
PUR5_CHRVO4.030e-1356.52Phosphoribosylformylglycinamidine cyclo-ligase n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11305contigL-elsbetiae_contig11305:1094..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1081
Cds size672
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.3436832-UTR-L-elsbetiae_contig11305:1093..15001622815342.3436832-UTR-L-elsbetiae_contig11305:1093..1500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11305 1094..1500 +
1691682849.6181822-UTR-L-elsbetiae_contig11305:1093..15001691682849.6181822-UTR-L-elsbetiae_contig11305:1093..1500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11305 1094..1500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.3532195-CDS-L-elsbetiae_contig11305:1500..21721622815342.3532195-CDS-L-elsbetiae_contig11305:1500..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11305 1501..2172 +
1691682849.6274652-CDS-L-elsbetiae_contig11305:1500..21721691682849.6274652-CDS-L-elsbetiae_contig11305:1500..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11305 1501..2172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11305.1164.1prot_L-elsbetiae_contig11305.1164.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11305 1501..2172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11305.1164.1

>prot_L-elsbetiae_contig11305.1164.1 ID=prot_L-elsbetiae_contig11305.1164.1|Name=mRNA_L-elsbetiae_contig11305.1164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
MTEAFPSCPPQSSTPPHPLQKQRDMYEKHVPSPPTPAANLSRSVTYYSLH
TRETTLSSNLRHVPDLHTEKRSSQASRHSSPASKLFILANPPPLVKKQSQ
RHIFYTGQGQPQHDSHAPGHNPASSQTIKTPSDGPRRQPEAHRARPSPRP
HPSLTPLPPRPPSAGAAPRLPPPARRPPPCPPRSSACAAAPPATAHQRRS
ATGRSPEGPRQKQRSPPPSLPPSL
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mRNA from alignment at L-elsbetiae_contig11305:1094..2172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11305.1164.1 ID=mRNA_L-elsbetiae_contig11305.1164.1|Name=mRNA_L-elsbetiae_contig11305.1164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1079bp|location=Sequence derived from alignment at L-elsbetiae_contig11305:1094..2172+ (Laminarionema elsbetiae ELsaHSoW15)
AGATAGGGAAGGCTTCACTTGATTACCCGTTCCACTGCGATCCAAAGGAG
AGAGACACTGTCGACCAGGAGATAAACACTGCCGTAGAACACAAGATAAA
ATATTCTCACGAGCGGGTCTGCGAAGACCTTTCTGGATGAAGACCGTTCT
TTGCAATGGACAGCCAGAGTCGTGCGGACGAAACTTGCAAAAAGTGGGAC
CGCACCATCATACATGCAAAAGAACCGTCCACACCATCAGCAAAGAAACA
CCCGTGGCATGAGGTGTGCCACGATTTTGGCAATACACACAAAGGGACTC
TCACGATTCTGCGATCATAGACTTCCGCTGGTTGGGGAGGCTTTGGACAA
ACACGCGCTTGCCACCTTGATTTGTATTGCTTCCACCTGCTGTGTGGCGA
CTACGGAATGACTGAAGCATTTCCGTCTTGCCCTCCTCAATCCTCTACGC
CGCCTCACCCATTGCAGAAACAGAGAGACATGTACGAGAAACACGTCCCA
AGCCCACCTACACCAGCTGCGAACCTCTCTCGCTCAGTGACGTATTACTC
TCTCCACACACGAGAGACTACACTCTCTTCCAATCTTCGACATGTACCCG
ACCTACATACTGAAAAGAGAAGCAGTCAAGCGAGTCGACACTCCTCTCCA
GCCAGTAAACTATTTATCTTGGCGAACCCCCCGCCCCTTGTCAAGAAGCA
ATCGCAGCGCCACATATTTTACACAGGACAGGGACAACCGCAACATGACT
CCCATGCCCCCGGGCACAACCCAGCATCCTCTCAAACAATCAAAACCCCT
TCAGACGGCCCTCGTAGGCAACCTGAGGCGCATCGGGCCCGGCCCTCTCC
TCGACCACACCCATCTCTAACACCACTTCCTCCCCGGCCTCCCTCAGCAG
GCGCCGCGCCTCGTCTGCCACCTCCGGCGCGACGACCACCACCATGCCCA
CCCCGCAGTTCAGCGTGCGCAGCAGCTCCTCCTGCGACAGCCCACCAGCG
GCGCTCAGCCACTGGAAGATCTCCGGAAGGTCCCAGACAGAAGCAGAGGA
GCCCGCCCCCGTCTCTGCCCCCGTCTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11305:1094..2172+

>mRNA_L-elsbetiae_contig11305.1164.1 ID=mRNA_L-elsbetiae_contig11305.1164.1|Name=mRNA_L-elsbetiae_contig11305.1164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig11305:1094..2172+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGAAGCATTTCCGTCTTGCCCTCCTCAATCCTCTACGCCGCCTCA
CCCATTGCAGAAACAGAGAGACATGTACGAGAAACACGTCCCAAGCCCAC
CTACACCAGCTGCGAACCTCTCTCGCTCAGTGACGTATTACTCTCTCCAC
ACACGAGAGACTACACTCTCTTCCAATCTTCGACATGTACCCGACCTACA
TACTGAAAAGAGAAGCAGTCAAGCGAGTCGACACTCCTCTCCAGCCAGTA
AACTATTTATCTTGGCGAACCCCCCGCCCCTTGTCAAGAAGCAATCGCAG
CGCCACATATTTTACACAGGACAGGGACAACCGCAACATGACTCCCATGC
CCCCGGGCACAACCCAGCATCCTCTCAAACAATCAAAACCCCTTCAGACG
GCCCTCGTAGGCAACCTGAGGCGCATCGGGCCCGGCCCTCTCCTCGACCA
CACCCATCTCTAACACCACTTCCTCCCCGGCCTCCCTCAGCAGGCGCCGC
GCCTCGTCTGCCACCTCCGGCGCGACGACCACCACCATGCCCACCCCGCA
GTTCAGCGTGCGCAGCAGCTCCTCCTGCGACAGCCCACCAGCGGCGCTCA
GCCACTGGAAGATCTCCGGAAGGTCCCAGACAGAAGCAGAGGAGCCCGCC
CCCGTCTCTGCCCCCGTCTCTGATGACTGAAGCATTTCCGTCTTGCCCTC
CTCAATCCTCTACGCCGCCTCACCCATTGCAGAAACAGAGAGACATGTAC
GAGAAACACGTCCCAAGCCCACCTACACCAGCTGCGAACCTCTCTCGCTC
AGTGACGTATTACTCTCTCCACACACGAGAGACTACACTCTCTTCCAATC
TTCGACATGTACCCGACCTACATACTGAAAAGAGAAGCAGTCAAGCGAGT
CGACACTCCTCTCCAGCCAGTAAACTATTTATCTTGGCGAACCCCCCGCC
CCTTGTCAAGAAGCAATCGCAGCGCCACATATTTTACACAGGACAGGGAC
AACCGCAACATGACTCCCATGCCCCCGGGCACAACCCAGCATCCTCTCAA
ACAATCAAAACCCCTTCAGACGGCCCTCGTAGGCAACCTGAGGCGCATCG
GGCCCGGCCCTCTCCTCGACCACACCCATCTCTAACACCACTTCCTCCCC
GGCCTCCCTCAGCAGGCGCCGCGCCTCGTCTGCCACCTCCGGCGCGACGA
CCACCACCATGCCCACCCCGCAGTTCAGCGTGCGCAGCAGCTCCTCCTGC
GACAGCCCACCAGCGGCGCTCAGCCACTGGAAGATCTCCGGAAGGTCCCA
GACAGAAGCAGAGGAGCCCGCCCCCGTCTCTGCCCCCGTCTCTG
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