mRNA_L-elsbetiae_contig11303.1163.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11303.1163.1
Unique NamemRNA_L-elsbetiae_contig11303.1163.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11303.1163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11303contigL-elsbetiae_contig11303:1146..2026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size266
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11303.1163.1prot_L-elsbetiae_contig11303.1163.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11303 1233..1994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.2756212-UTR-L-elsbetiae_contig11303:1145..12321622815342.2756212-UTR-L-elsbetiae_contig11303:1145..1232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11303 1146..1232 -
1691682849.5818348-UTR-L-elsbetiae_contig11303:1145..12321691682849.5818348-UTR-L-elsbetiae_contig11303:1145..1232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11303 1146..1232 -
1622815342.3092792-UTR-L-elsbetiae_contig11303:1994..20261622815342.3092792-UTR-L-elsbetiae_contig11303:1994..2026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11303 1995..2026 -
1691682849.6101644-UTR-L-elsbetiae_contig11303:1994..20261691682849.6101644-UTR-L-elsbetiae_contig11303:1994..2026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11303 1995..2026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.2865167-CDS-L-elsbetiae_contig11303:1232..13611622815342.2865167-CDS-L-elsbetiae_contig11303:1232..1361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11303 1233..1361 -
1691682849.5929396-CDS-L-elsbetiae_contig11303:1232..13611691682849.5929396-CDS-L-elsbetiae_contig11303:1232..1361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11303 1233..1361 -
1622815342.2977083-CDS-L-elsbetiae_contig11303:1976..19941622815342.2977083-CDS-L-elsbetiae_contig11303:1976..1994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11303 1977..1994 -
1691682849.6022344-CDS-L-elsbetiae_contig11303:1976..19941691682849.6022344-CDS-L-elsbetiae_contig11303:1976..1994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11303 1977..1994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11303.1163.1

>prot_L-elsbetiae_contig11303.1163.1 ID=prot_L-elsbetiae_contig11303.1163.1|Name=mRNA_L-elsbetiae_contig11303.1163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
MEETMEAFRVCHTSAGLYGSYSSSQPLWNRPRLPMRRERRRRAAASLP*
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mRNA from alignment at L-elsbetiae_contig11303:1146..2026-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11303.1163.1 ID=mRNA_L-elsbetiae_contig11303.1163.1|Name=mRNA_L-elsbetiae_contig11303.1163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=881bp|location=Sequence derived from alignment at L-elsbetiae_contig11303:1146..2026- (Laminarionema elsbetiae ELsaHSoW15)
TTGACTTCGGAAACTTCCAAGATTTGGCCACAATGGAAGAAACAATGGAG
GTGTGTATGTATGACGCGTGCATTGCTCTGCTGTTTTATCACGTCACACA
CGGGATAGGTTTCTCAATTCTCCGTTAGTTCTCGATTACCGGGTGGGGTT
TCCGTGCATGTGTTTTTTTTCTTCTTCACATTTATTTCCAGTGCTCGATG
GGCTCTCTGTCACGAGGACATCTTGCCAGAGTACCGAACCGTGGTCACAC
AGAAGGGTTCCTTTCCCCAAGGCCCCCACTCCCCCCGTCTGCGGTGCTTG
CCTAAGATTTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTTCCCTCGTCGA
CGGTGAGGTCGAAGCATGAACTGATTCAATTTCAGACCGGTGCGTCTTCC
GAAAGTGCTCGACGTATTTGATTATTTTTCGATTATTTTTGGGCGTTGAC
AGACACAATCCTTGTCGGTATTGTGGCAAGCACGGCACCTTTTAAAGATT
GACCCTGTCGGCGCGTGATGTCATGCAATGTACGGTATCTGCTAGAAGCT
TGTGGTCGACCACAAGCTTGTCTACCCGAGAATATAACCTGCCGAGTTCG
AGTTCTGGCAAGCATGGCGTCCTGCATGTAGTCCAGCTTGTATGTGATAT
AATGTTGCCCACCAGGCTTTTCGGGTCTGCCACACGTCCGCCGGGCTCTA
CGGCTCGTACAGCAGTAGTCAACCGCTCTGGAACAGGCCCAGACTGCCCA
TGCGCAGAGAGCGGAGGCGCCGAGCAGCTGCAAGCCTGCCTTGAGAGGAG
GGCTCTTTTTACCCACAGGTCGTAAAAATTTCCAAGAAAAACTGCTGTGC
GAATGAATGGCGGTTTTGCACCATTGTAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11303:1146..2026-

>mRNA_L-elsbetiae_contig11303.1163.1 ID=mRNA_L-elsbetiae_contig11303.1163.1|Name=mRNA_L-elsbetiae_contig11303.1163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig11303:1146..2026- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGAAACAATGGAGATGGAAGAAACAATGGAGGCTTTTCGGGTCTG
CCACACGTCCGCCGGGCTCTACGGCTCGTACAGCAGTAGTCAACCGCTCT
GGAACAGGCCCAGACTGCCCATGCGCAGAGAGCGGAGGCGCCGAGCAGCT
GCAAGCCTGCCTTGAGCTTTTCGGGTCTGCCACACGTCCGCCGGGCTCTA
CGGCTCGTACAGCAGTAGTCAACCGCTCTGGAACAGGCCCAGACTGCCCA
TGCGCAGAGAGCGGAGGCGCCGAGCAGCTGCAAGCCTGCCTTGA
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