mRNA_L-elsbetiae_contig11301.1162.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11301.1162.1
Unique NamemRNA_L-elsbetiae_contig11301.1162.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11301.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11301contigL-elsbetiae_contig11301:329..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.2281914-CDS-L-elsbetiae_contig11301:330..4641622815342.2281914-CDS-L-elsbetiae_contig11301:330..464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11301 331..464 -
1691682849.5609684-CDS-L-elsbetiae_contig11301:330..4641691682849.5609684-CDS-L-elsbetiae_contig11301:330..464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11301 331..464 -
1622815342.240034-CDS-L-elsbetiae_contig11301:473..6151622815342.240034-CDS-L-elsbetiae_contig11301:473..615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11301 474..615 -
1691682849.5724616-CDS-L-elsbetiae_contig11301:473..6151691682849.5724616-CDS-L-elsbetiae_contig11301:473..615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11301 474..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11301.1162.1prot_L-elsbetiae_contig11301.1162.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11301 331..615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11301.1162.1

>prot_L-elsbetiae_contig11301.1162.1 ID=prot_L-elsbetiae_contig11301.1162.1|Name=mRNA_L-elsbetiae_contig11301.1162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
VYNQLQSFVVAEGTTFKAYFMQLKVLVTNTVLMGLVDDGTIQFAVTQNQY
AVLTAPVFTGKAYAKVPFASVSVLLGRLEDFAHNTAGASKAR
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mRNA from alignment at L-elsbetiae_contig11301:329..615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11301.1162.1 ID=mRNA_L-elsbetiae_contig11301.1162.1|Name=mRNA_L-elsbetiae_contig11301.1162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=287bp|location=Sequence derived from alignment at L-elsbetiae_contig11301:329..615- (Laminarionema elsbetiae ELsaHSoW15)
GTATATAATCAGCTGCAGTCTTTCGTGGTTGCGGAAGGCACTACGTTCAA
GGCGTACTTCATGCAGCTGAAAGTGCTGGTGACAAATACGGTTCTCATGG
GATTGGTAGATGATGGTACCATTCAGTTCGCGGTCACCCAGAGCATTAAA
GATCAGTATGCGGTATTAACGGCCCCGGTTTTTACCGGTAAGGCTTACGC
GAAGGTACCGTTCGCGTCGGTTTCGGTTTTGCTTGGGCGTTTGGAGGATT
TCGCCCATAACACGGCCGGGGCTTCTAAGGCACGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11301:329..615-

>mRNA_L-elsbetiae_contig11301.1162.1 ID=mRNA_L-elsbetiae_contig11301.1162.1|Name=mRNA_L-elsbetiae_contig11301.1162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig11301:329..615- (Laminarionema elsbetiae ELsaHSoW15)
GTATATAATCAGCTGCAGTCTTTCGTGGTTGCGGAAGGCACTACGTTCAA
GGCGTACTTCATGCAGCTGAAAGTGCTGGTGACAAATACGGTTCTCATGG
GATTGGTAGATGATGGTACCATTCAGTTCGCGGTCACCCAGAGTATATAA
TCAGCTGCAGTCTTTCGTGGTTGCGGAAGGCACTACGTTCAAGGCGTACT
TCATGCAGCTGAAAGTGCTGGTGACAAATACGGTTCTCATGGGATTGGTA
GATGATGGTACCATTCAGTTCGCGGTCACCCAGAATCAGTATGCGGTATT
AACGGCCCCGGTTTTTACCGGTAAGGCTTACGCGAAGGTACCGTTCGCGT
CGGTTTCGGTTTTGCTTGGGCGTTTGGAGGATTTCGCCCATAACACGGCC
GGGGCTTCTAAGGCACGGATCAGTATGCGGTATTAACGGCCCCGGTTTTT
ACCGGTAAGGCTTACGCGAAGGTACCGTTCGCGTCGGTTTCGGTTTTGCT
TGGGCGTTTGGAGGATTTCGCCCATAACACGGCCGGGGCTTCTAAGGCAC
GG
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