mRNA_L-elsbetiae_contig11294.1149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11294.1149.1
Unique NamemRNA_L-elsbetiae_contig11294.1149.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11294.1149.1 vs. uniprot
Match: A0A6H5J9I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9I8_9PHAE)

HSP 1 Score: 497 bits (1279), Expect = 2.240e-171
Identity = 243/277 (87.73%), Postives = 260/277 (93.86%), Query Frame = 1 
Query:    1 LGSVEQQHAAAIDGIDVFKGTQFGRHAYKSLMQRGFTIAPTFSSADKDETTRFMSERIHEEYFTETSEDGRLRVPYAKGLKKINDQERWMVNLEETSHKTSLGPKFTKGAETAVQTLGFVLQALVYSINNVVDAEKLTLLLSAAGEASQVLHKDQGGKDVQKRLVGSGSGTRGRSEPAPYTGMCAFRDPVYLHVNEASHKDFRKDDYDWSDMVELIIPPGYGILFHSCLVHSGSSYEEINGRLHIHFKCKNGRTTFDNTFHQVKHDETKQPAARKAL 831
            LG VE+QHAAAIDGID+FK TQ GR+AY SLM+RGF IAP FSSAD+DETTRFMSERIHEEYFTETSEDGRLRVPYAKGL+KINDQERWMVNLEE SHK SLG KF + AE AVQT+GFVLQALV SI+NVVDAEKLTLLLSAAGEA+QVLHKDQ GKDVQKRL+GSGSGTRGRSEPAPYTG+CAFR+PVYLHV+EASHKDF KD+YDW+DMVELIIPPGYGILFHSCLVHSGSSYEEIN RLHI+FKCKNGRTTFDNTFHQVKHDE KQPAARKAL
Sbjct:  327 LGPVEKQHAAAIDGIDIFKCTQLGRYAYDSLMRRGFAIAPVFSSADRDETTRFMSERIHEEYFTETSEDGRLRVPYAKGLRKINDQERWMVNLEEASHKKSLGQKFMERAEIAVQTMGFVLQALV-SIDNVVDAEKLTLLLSAAGEANQVLHKDQDGKDVQKRLLGSGSGTRGRSEPAPYTGLCAFREPVYLHVDEASHKDFLKDEYDWNDMVELIIPPGYGILFHSCLVHSGSSYEEINSRLHIYFKCKNGRTTFDNTFHQVKHDEAKQPAARKAL 602
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11294.1149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9I8_9PHAE2.240e-17187.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11294contigL-elsbetiae_contig11294:1626..2539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size914
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11294.1149.1prot_L-elsbetiae_contig11294.1149.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11294 1719..2462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.5236418-UTR-L-elsbetiae_contig11294:1625..17181622815340.5236418-UTR-L-elsbetiae_contig11294:1625..1718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11294 1626..1718 +
1691682848.2877913-UTR-L-elsbetiae_contig11294:1625..17181691682848.2877913-UTR-L-elsbetiae_contig11294:1625..1718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11294 1626..1718 +
1622815340.545846-UTR-L-elsbetiae_contig11294:2462..25391622815340.545846-UTR-L-elsbetiae_contig11294:2462..2539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11294 2463..2539 +
1691682848.3041291-UTR-L-elsbetiae_contig11294:2462..25391691682848.3041291-UTR-L-elsbetiae_contig11294:2462..2539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11294 2463..2539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.5351517-CDS-L-elsbetiae_contig11294:1718..24621622815340.5351517-CDS-L-elsbetiae_contig11294:1718..2462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11294 1719..2462 +
1691682848.296871-CDS-L-elsbetiae_contig11294:1718..24621691682848.296871-CDS-L-elsbetiae_contig11294:1718..2462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11294 1719..2462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11294.1149.1

>prot_L-elsbetiae_contig11294.1149.1 ID=prot_L-elsbetiae_contig11294.1149.1|Name=mRNA_L-elsbetiae_contig11294.1149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MQRGFTIAPTFSSADKDETTRFMSERIHEEYFTETSEDGRLRVPYAKGLK
KINDQERWMVNLEETSHKTSLGPKFTKGAETAVQTLGFVLQALVYSINNV
VDAEKLTLLLSAAGEASQVLHKDQGGKDVQKRLVGSGSGTRGRSEPAPYT
GMCAFRDPVYLHVNEASHKDFRKDDYDWSDMVELIIPPGYGILFHSCLVH
SGSSYEEINGRLHIHFKCKNGRTTFDNTFHQVKHDETKQPAARKALS*
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mRNA from alignment at L-elsbetiae_contig11294:1626..2539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11294.1149.1 ID=mRNA_L-elsbetiae_contig11294.1149.1|Name=mRNA_L-elsbetiae_contig11294.1149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=914bp|location=Sequence derived from alignment at L-elsbetiae_contig11294:1626..2539+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGCTCTGTGGAACAGCAACACGCAGCGGCAATCGACGGGATCGACGT
CTTCAAAGGCACTCAGTTCGGGCGACATGCCTACAAATCGCTCATGCAAC
GCGGGTTCACGATTGCCCCTACCTTTTCCAGTGCTGACAAAGATGAGACA
ACACGCTTCATGTCGGAGAGGATTCACGAGGAGTACTTCACAGAGACAAG
CGAGGACGGGAGACTCCGGGTCCCCTATGCAAAGGGGCTCAAGAAGATCA
ACGACCAGGAGAGATGGATGGTGAACTTAGAAGAGACATCGCACAAGACG
AGCCTCGGGCCGAAGTTCACGAAGGGGGCGGAAACAGCCGTCCAAACCTT
GGGCTTTGTGTTGCAAGCCCTCGTCTACTCAATCAATAACGTCGTGGACG
CCGAGAAGCTAACTCTCCTGCTCAGCGCAGCGGGCGAGGCCAGTCAAGTG
CTTCACAAGGATCAAGGCGGAAAGGACGTGCAGAAAAGGCTCGTGGGTTC
AGGTTCAGGAACGCGAGGGAGGTCTGAGCCGGCGCCGTACACCGGAATGT
GTGCTTTCCGAGACCCTGTGTACCTTCACGTCAACGAGGCCAGCCACAAG
GACTTTCGGAAGGACGACTACGACTGGAGTGACATGGTAGAGCTGATCAT
CCCTCCGGGGTATGGTATTCTCTTTCACAGCTGCCTGGTGCACTCCGGGA
GCTCGTACGAAGAGATCAACGGCAGGCTACACATACACTTTAAGTGCAAG
AACGGCCGGACAACGTTTGACAACACTTTTCATCAGGTCAAACATGACGA
GACGAAACAACCAGCTGCTAGGAAAGCGCTGTCGTAGATGTTGTTTGAAT
AATCGTGCTTTATGTGCTGTCGTATACCCAGGCCCTGAAAAGGGTCGGCT
GCCAGAGTGGAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11294:1626..2539+

>mRNA_L-elsbetiae_contig11294.1149.1 ID=mRNA_L-elsbetiae_contig11294.1149.1|Name=mRNA_L-elsbetiae_contig11294.1149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig11294:1626..2539+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACGCGGGTTCACGATTGCCCCTACCTTTTCCAGTGCTGACAAAGA
TGAGACAACACGCTTCATGTCGGAGAGGATTCACGAGGAGTACTTCACAG
AGACAAGCGAGGACGGGAGACTCCGGGTCCCCTATGCAAAGGGGCTCAAG
AAGATCAACGACCAGGAGAGATGGATGGTGAACTTAGAAGAGACATCGCA
CAAGACGAGCCTCGGGCCGAAGTTCACGAAGGGGGCGGAAACAGCCGTCC
AAACCTTGGGCTTTGTGTTGCAAGCCCTCGTCTACTCAATCAATAACGTC
GTGGACGCCGAGAAGCTAACTCTCCTGCTCAGCGCAGCGGGCGAGGCCAG
TCAAGTGCTTCACAAGGATCAAGGCGGAAAGGACGTGCAGAAAAGGCTCG
TGGGTTCAGGTTCAGGAACGCGAGGGAGGTCTGAGCCGGCGCCGTACACC
GGAATGTGTGCTTTCCGAGACCCTGTGTACCTTCACGTCAACGAGGCCAG
CCACAAGGACTTTCGGAAGGACGACTACGACTGGAGTGACATGGTAGAGC
TGATCATCCCTCCGGGGTATGGTATTCTCTTTCACAGCTGCCTGGTGCAC
TCCGGGAGCTCGTACGAAGAGATCAACGGCAGGCTACACATACACTTTAA
GTGCAAGAACGGCCGGACAACGTTTGACAACACTTTTCATCAGGTCAAAC
ATGACGAGACGAAACAACCAGCTGCTAGGAAAGCGCTGTCGTAGATGCAA
CGCGGGTTCACGATTGCCCCTACCTTTTCCAGTGCTGACAAAGATGAGAC
AACACGCTTCATGTCGGAGAGGATTCACGAGGAGTACTTCACAGAGACAA
GCGAGGACGGGAGACTCCGGGTCCCCTATGCAAAGGGGCTCAAGAAGATC
AACGACCAGGAGAGATGGATGGTGAACTTAGAAGAGACATCGCACAAGAC
GAGCCTCGGGCCGAAGTTCACGAAGGGGGCGGAAACAGCCGTCCAAACCT
TGGGCTTTGTGTTGCAAGCCCTCGTCTACTCAATCAATAACGTCGTGGAC
GCCGAGAAGCTAACTCTCCTGCTCAGCGCAGCGGGCGAGGCCAGTCAAGT
GCTTCACAAGGATCAAGGCGGAAAGGACGTGCAGAAAAGGCTCGTGGGTT
CAGGTTCAGGAACGCGAGGGAGGTCTGAGCCGGCGCCGTACACCGGAATG
TGTGCTTTCCGAGACCCTGTGTACCTTCACGTCAACGAGGCCAGCCACAA
GGACTTTCGGAAGGACGACTACGACTGGAGTGACATGGTAGAGCTGATCA
TCCCTCCGGGGTATGGTATTCTCTTTCACAGCTGCCTGGTGCACTCCGGG
AGCTCGTACGAAGAGATCAACGGCAGGCTACACATACACTTTAAGTGCAA
GAACGGCCGGACAACGTTTGACAACACTTTTCATCAGGTCAAACATGACG
AGACGAAACAACCAGCTGCTAGGAAAGCGCTGTCGTAG
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