mRNA_L-elsbetiae_contig11291.1148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11291.1148.1
Unique NamemRNA_L-elsbetiae_contig11291.1148.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11291.1148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11291contigL-elsbetiae_contig11291:1810..2141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.4463408-CDS-L-elsbetiae_contig11291:1809..21331622815340.4463408-CDS-L-elsbetiae_contig11291:1809..2133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11291 1810..2133 +
1691682848.2503917-CDS-L-elsbetiae_contig11291:1809..21331691682848.2503917-CDS-L-elsbetiae_contig11291:1809..2133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11291 1810..2133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.4591732-UTR-L-elsbetiae_contig11291:2133..21411622815340.4591732-UTR-L-elsbetiae_contig11291:2133..2141Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11291 2134..2141 +
1691682848.2702842-UTR-L-elsbetiae_contig11291:2133..21411691682848.2702842-UTR-L-elsbetiae_contig11291:2133..2141Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11291 2134..2141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11291.1148.1prot_L-elsbetiae_contig11291.1148.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11291 1810..2133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11291.1148.1

>prot_L-elsbetiae_contig11291.1148.1 ID=prot_L-elsbetiae_contig11291.1148.1|Name=mRNA_L-elsbetiae_contig11291.1148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
RVRFWDRERSCSRNAVNRPVEVTSLLGVYFWSPPRERSKTEKIYERSGAP
IYHRYHSAVLSYYTCHCRCWDNFVWLYPAPRARCCVLVRARHITNRNTVI
VGVVDPG*
back to top

mRNA from alignment at L-elsbetiae_contig11291:1810..2141+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11291.1148.1 ID=mRNA_L-elsbetiae_contig11291.1148.1|Name=mRNA_L-elsbetiae_contig11291.1148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=332bp|location=Sequence derived from alignment at L-elsbetiae_contig11291:1810..2141+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGTCAGATTTTGGGATCGCGAGAGATCGTGCTCGCGTAATGCGGTGAA
TCGCCCGGTCGAGGTGACTTCGTTGCTCGGGGTGTATTTTTGGAGTCCTC
CAAGAGAGCGGTCAAAAACTGAAAAAATATACGAACGGTCTGGTGCACCC
ATCTATCATCGCTACCATTCAGCAGTCTTATCCTATTACACATGTCACTG
CCGGTGTTGGGACAACTTTGTATGGCTATACCCTGCGCCGAGAGCACGCT
GCTGCGTGTTGGTAAGGGCACGTCATATCACAAACCGGAATACCGTAATC
GTCGGAGTCGTAGACCCGGGATAACGTCGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11291:1810..2141+

>mRNA_L-elsbetiae_contig11291.1148.1 ID=mRNA_L-elsbetiae_contig11291.1148.1|Name=mRNA_L-elsbetiae_contig11291.1148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig11291:1810..2141+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGTCAGATTTTGGGATCGCGAGAGATCGTGCTCGCGTAATGCGGTGAA
TCGCCCGGTCGAGGTGACTTCGTTGCTCGGGGTGTATTTTTGGAGTCCTC
CAAGAGAGCGGTCAAAAACTGAAAAAATATACGAACGGTCTGGTGCACCC
ATCTATCATCGCTACCATTCAGCAGTCTTATCCTATTACACATGTCACTG
CCGGTGTTGGGACAACTTTGTATGGCTATACCCTGCGCCGAGAGCACGCT
GCTGCGTGTTGGTAAGGGCACGTCATATCACAAACCGGAATACCGTAATC
GTCGGAGTCGTAGACCCGGGATAACGCGTCAGATTTTGGGATCGCGAGAG
ATCGTGCTCGCGTAATGCGGTGAATCGCCCGGTCGAGGTGACTTCGTTGC
TCGGGGTGTATTTTTGGAGTCCTCCAAGAGAGCGGTCAAAAACTGAAAAA
ATATACGAACGGTCTGGTGCACCCATCTATCATCGCTACCATTCAGCAGT
CTTATCCTATTACACATGTCACTGCCGGTGTTGGGACAACTTTGTATGGC
TATACCCTGCGCCGAGAGCACGCTGCTGCGTGTTGGTAAGGGCACGTCAT
ATCACAAACCGGAATACCGTAATCGTCGGAGTCGTAGACCCGGGATAA
back to top