mRNA_L-elsbetiae_contig1129.1145.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1129.1145.1
Unique NamemRNA_L-elsbetiae_contig1129.1145.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1129.1145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1129contigL-elsbetiae_contig1129:12826..17487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2316
Cds size1173
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.2025032-UTR-L-elsbetiae_contig1129:12825..134201622815340.2025032-UTR-L-elsbetiae_contig1129:12825..13420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1129 12826..13420 +
1691682848.1174488-UTR-L-elsbetiae_contig1129:12825..134201691682848.1174488-UTR-L-elsbetiae_contig1129:12825..13420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1129 12826..13420 +
1622815340.3064847-UTR-L-elsbetiae_contig1129:16939..174871622815340.3064847-UTR-L-elsbetiae_contig1129:16939..17487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1129 16940..17487 +
1691682848.1765604-UTR-L-elsbetiae_contig1129:16939..174871691682848.1765604-UTR-L-elsbetiae_contig1129:16939..17487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1129 16940..17487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.2218668-CDS-L-elsbetiae_contig1129:13420..136101622815340.2218668-CDS-L-elsbetiae_contig1129:13420..13610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 13421..13610 +
1691682848.1284275-CDS-L-elsbetiae_contig1129:13420..136101691682848.1284275-CDS-L-elsbetiae_contig1129:13420..13610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 13421..13610 +
1622815340.2388375-CDS-L-elsbetiae_contig1129:14112..146481622815340.2388375-CDS-L-elsbetiae_contig1129:14112..14648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 14113..14648 +
1691682848.1357949-CDS-L-elsbetiae_contig1129:14112..146481691682848.1357949-CDS-L-elsbetiae_contig1129:14112..14648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 14113..14648 +
1622815340.2539449-CDS-L-elsbetiae_contig1129:15135..152421622815340.2539449-CDS-L-elsbetiae_contig1129:15135..15242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 15136..15242 +
1691682848.1431768-CDS-L-elsbetiae_contig1129:15135..152421691682848.1431768-CDS-L-elsbetiae_contig1129:15135..15242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 15136..15242 +
1622815340.2754416-CDS-L-elsbetiae_contig1129:15914..160651622815340.2754416-CDS-L-elsbetiae_contig1129:15914..16065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 15915..16065 +
1691682848.152943-CDS-L-elsbetiae_contig1129:15914..160651691682848.152943-CDS-L-elsbetiae_contig1129:15914..16065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 15915..16065 +
1622815340.2908657-CDS-L-elsbetiae_contig1129:16750..169391622815340.2908657-CDS-L-elsbetiae_contig1129:16750..16939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 16751..16939 +
1691682848.163047-CDS-L-elsbetiae_contig1129:16750..169391691682848.163047-CDS-L-elsbetiae_contig1129:16750..16939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1129 16751..16939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1129.1145.1prot_L-elsbetiae_contig1129.1145.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1129 13421..16939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1129.1145.1

>prot_L-elsbetiae_contig1129.1145.1 ID=prot_L-elsbetiae_contig1129.1145.1|Name=mRNA_L-elsbetiae_contig1129.1145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=391bp
MRARADSDASQRAKNATVRDPQSMMSVDLQSETASKFSTTDAGLVSAEGK
ALRDLDDFKRAFGEQGTRAKAYRKQAEAAAAGNDLLTRENNDLKTKLSEL
QRSHASLRRSAEAAVSEERRRSAASLQEQLYRLKGPAGFDVLKHENLDLQ
KRLSGLQHHHGELKRQAQAAINAAEERARASEVGRAAAYDLSRKLEAQLS
SVMDQASKLHQAAAASTPAAAAVTAHGSAADPPPAPVRQQQQVPRHLRDI
EKWFDGIPERFRGNVRAAKLGKHLTDNVNNKQGLEDAIAEVKRLTIQVTP
LVPRKVRSHILRGPEGWASPPGSPSLEEASLRTTPVGLGVIQPAVAMVAN
AAGGRHREAGAGCTLSRQEHGGTNRQQRVQGHGRSVGDGG*
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mRNA from alignment at L-elsbetiae_contig1129:12826..17487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1129.1145.1 ID=mRNA_L-elsbetiae_contig1129.1145.1|Name=mRNA_L-elsbetiae_contig1129.1145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4662bp|location=Sequence derived from alignment at L-elsbetiae_contig1129:12826..17487+ (Laminarionema elsbetiae ELsaHSoW15)
ACTTTATATGTGTGTGTTCCCATCTATTCTAGCGCCTGTCCACCTTTTCA
GGTGTGCTACGACACGTTATTAGAAAAATGCGACTTGGGAAAAGCGATCA
AATTGTGTTTCTATGTCTACATATGTTTCAGATGATGGGTAAGTCAAAAG
CAGAACATAACCACTCGATTCCACAGCGTGTATCGCCAAAAACACAAAAG
CCTACTCGGATTGGTATTTGACCCGTTCTCCGTTCCATTTACCATACCAT
CCATGCATGGTCTTGAGTTACATTAATCCAACTTCAGCCAAAGGTCATTC
CTGGCCGGCGAAAGCCAACGTGCTCCGCCGGAATAGTTCATGATAGGGCG
GCGGCGGCTGTGCACCCGGCCGGTCCCCTCAGCTTAGTCAGTCTGCCGGT
TGCCGGGTCTTTGGGCACCACCCATGGCCTAGACAGCACGCATCGCCTTT
GCTCCCCGTGCCTCCATGCCTCCCTGCCTTCCTCCCTTCGCCTTTCACTC
TCTCACCCGCCGGCGCATCCCGCGTATATCGTCAGCCCGAATATACAGGA
TTGTTCGGGGCTTCCGGAAATACCCGTAAGCTGAGCGAGGCCGGCATGAG
GGCGCGGGCTGATAGCGACGCCAGCCAGAGGGCCAAAAACGCAACGGTGC
GGGACCCGCAGAGCATGATGAGCGTCGACCTCCAGAGCGAAACCGCCTCC
AAGTTTTCGACCACAGATGCCGGCCTTGTTTCGGCCGAAGGCAAGGCGCT
CCGTGACTTGGACGACTTCAAGAGGGCGTTCGGAGGTAAGCTTGGACACT
TCTAGGGGGGGGGGGGGTATCGCTGGAGACACGCTCTCCCACCGATTCCA
TCGGGAAAATAAGCATTTATTTCCATAGCAATCAATCCGTGTTTTCACCA
GGTATTCATTATAACAACGGCAACATCCAGGTCCTAGGAGCTTTGCATGC
GGCTGTTGGGAGTTCTCCAAGACGATCCCTCTGTGCTGTAATTATGTGGT
CTTGTTGACGATGCTTGCGTTCTTCGCGGCAACGGACGGTACTCGCATTC
AACACGCCGGCGAGTGTGACTTAGGATACTCGCGTTGGGGATGGCGGGTC
GCAAGGTGCTTTCGCGCCTGCGGATGAACCAGATATTGAAGTCAAAGTGC
CAATGGCGACGGAGGGTGAGCGGTGCGCGGACACAACAGTTGCACTCAAC
AATTTTGAGCGTCACGGGCACTACTACTACTACTGTACGTCTCTCCCATG
ACGCGCTAACCCCGGGTTGCCACCAACGTGCCGGCAGAACAAGGTACTCG
CGCCAAGGCGTACCGAAAACAGGCGGAAGCCGCTGCCGCAGGAAATGACC
TCCTCACGCGGGAGAACAACGACCTGAAGACGAAGCTCTCCGAGCTCCAG
CGCAGTCACGCCAGCCTGCGGCGGTCGGCCGAGGCGGCGGTCAGCGAGGA
GCGCAGGCGGAGCGCTGCCAGCCTCCAAGAGCAGCTCTACCGTCTGAAGG
GGCCGGCCGGATTCGACGTCCTCAAGCACGAGAACCTCGACCTGCAGAAA
AGGCTCTCAGGCCTTCAGCACCACCACGGGGAACTAAAGCGGCAAGCGCA
GGCGGCGATCAACGCCGCGGAGGAGCGCGCGCGCGCCTCGGAAGTGGGCA
GGGCGGCCGCTTACGACCTCTCGCGAAAGCTCGAGGCGCAGCTGTCCTCC
GTGATGGATCAGGCTTCGAAGCTCCACCAGGCGGCAGCCGCCAGCACGCC
CGCCGCCGCGGCGGTGACAGCTCATGGGAGCGCGGCGGACCCCCCACCCG
CGCCAGTCCGCCAGCAGCAGCAGGTCCGTGCTTTAGACACCGTTATTTAT
CGTGTACTTTTGTTTTCGGCCCAGGCGTAACGGGCTTGTGTGGCGCTATT
TACCACGCACGCGATCAAAGGGACATGCATGTACCTAACCCTACGGCTTC
AGGTGTTTTCCCTAAGCACTCTAAGAAAATAAGACGCTGGCACGGGTCTG
TGTAGGGGACAAACGACGCTTGAAGCGAAGTGCACGGGCTGACCAGAAAA
GTTCCACTGCTGTATTTAGCTACTGCCGTTTTCGGAGTCCTGCACTGTCC
ATATACGAGCCAGGCGACATGCCTCGTCTGACGCCGCCAAGGAGAAGTTG
TTGTGGTCGGCGATATTTCCTAAGCCAGATAGCGCGGTGTGTTGCGGCGG
ATGATACGCCGACGACTCTGGATCCAAACGGAGATAATCTCGTCGCCCTT
TACCCCAGAGATGACTCCCTCGGTCGATTGACTGGTTATTTTTTGGTTCG
TCTCCCGTAGGTACCCCGGCACCTCCGCGATATCGAGAAATGGTTCGACG
GCATCCCAGAGCGTTTTCGCGGCAACGTCCGCGCTGCGAAGCTCGGAAAG
CACCTCACAGACAACGTGTGAGTTCAAGTGTATGTAGGGGGGGGGGGCGT
GGCGAAGGCGAGGGAGGGTGCATGCGCAGCGTTGGGATTGCACGTTTGGC
CGGTAGATGGGTTATGTAAGTTGTTGTTGTTGCCGCCGGCATGGCCGTGG
TTGGGTTCGTTGTATTAGTTGCCGGTGGTTAGATACGTCGTTGACGACAA
CGTGTGCCCACAATATTTTGCGTGTTCATCAGCAAGCTGGCGAACACCGT
GTGTTAAGTGCTGAGAACTTCGGAGCCCTCCTTTCTCTAGCACCCCCGCT
GCAGCCACAGCCGTCTGTTCTGTCTGTCTGTCTGCCTTTCTCTTTATCTC
CTCTCTTCCTTCCCTCTTACCGTAGGTGACACAAGATACCACACCCCCTG
GACAGATTTTCAAAGCTCGATTCCTCCCCCGCAAGAAGAGTGCCGGTGCC
AAAAAGGGTGGCGTTGGAAAGATCTAGTCAAGGGCTGTCCGAAAATGTGT
CGTTTGGTGCTGGCAACTTCTTCTTTACGGAGTAGGGGAGCTCTAAAATT
CGGTCCAGCGGGTGTGGTATCTTGTGTCACCTACGGTAATCGCACCCTAC
CCTCCGTCGTCGGCTATTTTACCGTGTGCGTCTCTGCCCCCACACGCGTT
CAACAAACGCGAACGAAAACGCGACACTGAAAAAACCAGCAACAACAAGC
AGGGGTTGGAGGACGCGATTGCTGAGGTCAAGAGACTAACCATCCAAGTC
ACGCCGCTCGTTCCACGCAAAGTACGCTCACACATTCTGCGGGGCCCCGA
GGGATGGGCGTCGCCGCCCGGATCGCCATCGCTAGAAGAGGTCAGTTTTT
TTTTCTGCGGACAGCGCCCGCTCTCGAACGAGGGAAGCATCGGCCTTGAT
GAGCGCCCACCTGCAACAAATTTGATGGCTTGATGGGAATATATCGTGTT
TGTGGGAAGAACACCGCCGCGGGAATCGTTTAAGTTGTTGAAGGGAAAAG
GGAGTATCTCGCCGGGGTGGGCGGGGGAAGGGGCGTGTGGATGATGCTCG
TATTTTGTTGTGCCCCCCGGTGAACTGACGAGGATACTTTCTTACACTTT
CGAAGCGCATGTATGGAACTGCACCCACTTTGACCACACAACATCCAAAC
CCGATGATCTCAATCTTAGACTAGATACCCTAGGGAAGACAGAGTAGGCA
ATTCGTGCTGAATCGACTCTCTCGCTTTGCTCCACGGACGTGTCCGGATG
TCCCTCGACGAGTTCAGTATTGTCATGTGGAGAGGATGCGAGTGACGAAG
ATCTTAAGGGCTTACTGCTGTTGTGAGTAACCGGCGGAGCAGCCTGATCG
AACCTCATAATACGGAGGAACTCAAAGCACATATTTACACACGAACCCGT
CTGTCGGGCGCCGCTTCCCGTCGCAGGACATGAGTGACCCGCCCTCCGCT
CCTGAGCCTGCTACTTCTGCCCCAATCCTTCCCACCGCCTTCGCCAACCC
CGGGGTTGTCCCCACGTGACAAAAGGCTTCGTTGCGGACGACACCGGTGG
GACTCGGCGTGATACAGCCCGCGGTAGCCATGGTTGCCAACGCCGCCGGC
GGTCGCCACCGCGAGGCGGGAGCTGGCTGCACGCTCTCCCGGCAGGAGCA
CGGCGGGACGAATCGGCAACAGCGGGTGCAAGGCCACGGCCGCAGCGTCG
GCGACGGGGGGTAGGCTTGATGGGCCAGCCTGGGTGGGCCAGCCCGAGTG
CTGCCCGTTTTGAAGAAATGCGGTGTTGGGGGTGGCTGCACTTGATACGC
GGGGGTAGCAAGGGTCCCATTACTTGAGAACACGTCCAAGACGTTACCGG
CGTGCACGCGGCACGTACTGTCGTCCAGCGTTCATGAGGCCGTGGAGCAC
CTGATCTTGTTTTTGTTTTTGTATATGAACGAGTTAAGTACGCTGCAACC
GGAGTGGTGGGCACGCGGGCGGGGGTTTTGCCCAGACGATCGACGAGCGG
GCTATGCTGGGGTTGTTGCTTCTGGTTTCGACTGATTTCGGCAGGCACGG
CCCCACACACCGTTCCACGTGAGAATAACTCACTGCCGTGATGCTTTTCT
TAGAGAACGTGAGCATTCCGCGATTTATCAAGTGGCACGCACGAGTTTCC
AAGCGAAAATGTCAGGCGCGAATAAATATAGCATGCACTGAGACAGGGTC
CGCCCCCGGCTCTATTCTTGTGGCGGTGCTAAGTCGACTCGAAAACAAAA
TATCTCACCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1129:12826..17487+

>mRNA_L-elsbetiae_contig1129.1145.1 ID=mRNA_L-elsbetiae_contig1129.1145.1|Name=mRNA_L-elsbetiae_contig1129.1145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2346bp|location=Sequence derived from alignment at L-elsbetiae_contig1129:12826..17487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGCGCGGGCTGATAGCGACGCCAGCCAGAGGGCCAAAAACGCAAC
GGTGCGGGACCCGCAGAGCATGATGAGCGTCGACCTCCAGAGCGAAACCG
CCTCCAAGTTTTCGACCACAGATGCCGGCCTTGTTTCGGCCGAAGGCAAG
GCGCTCCGTGACTTGGACGACTTCAAGAGGGCGTTCGGAGATGAGGGCGC
GGGCTGATAGCGACGCCAGCCAGAGGGCCAAAAACGCAACGGTGCGGGAC
CCGCAGAGCATGATGAGCGTCGACCTCCAGAGCGAAACCGCCTCCAAGTT
TTCGACCACAGATGCCGGCCTTGTTTCGGCCGAAGGCAAGGCGCTCCGTG
ACTTGGACGACTTCAAGAGGGCGTTCGGAGAACAAGGTACTCGCGCCAAG
GCGTACCGAAAACAGGCGGAAGCCGCTGCCGCAGGAAATGACCTCCTCAC
GCGGGAGAACAACGACCTGAAGACGAAGCTCTCCGAGCTCCAGCGCAGTC
ACGCCAGCCTGCGGCGGTCGGCCGAGGCGGCGGTCAGCGAGGAGCGCAGG
CGGAGCGCTGCCAGCCTCCAAGAGCAGCTCTACCGTCTGAAGGGGCCGGC
CGGATTCGACGTCCTCAAGCACGAGAACCTCGACCTGCAGAAAAGGCTCT
CAGGCCTTCAGCACCACCACGGGGAACTAAAGCGGCAAGCGCAGGCGGCG
ATCAACGCCGCGGAGGAGCGCGCGCGCGCCTCGGAAGTGGGCAGGGCGGC
CGCTTACGACCTCTCGCGAAAGCTCGAGGCGCAGCTGTCCTCCGTGATGG
ATCAGGCTTCGAAGCTCCACCAGGCGGCAGCCGCCAGCACGCCCGCCGCC
GCGGCGGTGACAGCTCATGGGAGCGCGGCGGACCCCCCACCCGCGCCAGT
CCGCCAGCAGCAGCAGAACAAGGTACTCGCGCCAAGGCGTACCGAAAACA
GGCGGAAGCCGCTGCCGCAGGAAATGACCTCCTCACGCGGGAGAACAACG
ACCTGAAGACGAAGCTCTCCGAGCTCCAGCGCAGTCACGCCAGCCTGCGG
CGGTCGGCCGAGGCGGCGGTCAGCGAGGAGCGCAGGCGGAGCGCTGCCAG
CCTCCAAGAGCAGCTCTACCGTCTGAAGGGGCCGGCCGGATTCGACGTCC
TCAAGCACGAGAACCTCGACCTGCAGAAAAGGCTCTCAGGCCTTCAGCAC
CACCACGGGGAACTAAAGCGGCAAGCGCAGGCGGCGATCAACGCCGCGGA
GGAGCGCGCGCGCGCCTCGGAAGTGGGCAGGGCGGCCGCTTACGACCTCT
CGCGAAAGCTCGAGGCGCAGCTGTCCTCCGTGATGGATCAGGCTTCGAAG
CTCCACCAGGCGGCAGCCGCCAGCACGCCCGCCGCCGCGGCGGTGACAGC
TCATGGGAGCGCGGCGGACCCCCCACCCGCGCCAGTCCGCCAGCAGCAGC
AGGTACCCCGGCACCTCCGCGATATCGAGAAATGGTTCGACGGCATCCCA
GAGCGTTTTCGCGGCAACGTCCGCGCTGCGAAGCTCGGAAAGCACCTCAC
AGACAACGTGTACCCCGGCACCTCCGCGATATCGAGAAATGGTTCGACGG
CATCCCAGAGCGTTTTCGCGGCAACGTCCGCGCTGCGAAGCTCGGAAAGC
ACCTCACAGACAACGTCAACAACAAGCAGGGGTTGGAGGACGCGATTGCT
GAGGTCAAGAGACTAACCATCCAAGTCACGCCGCTCGTTCCACGCAAAGT
ACGCTCACACATTCTGCGGGGCCCCGAGGGATGGGCGTCGCCGCCCGGAT
CGCCATCGCTAGAAGAGCAACAACAAGCAGGGGTTGGAGGACGCGATTGC
TGAGGTCAAGAGACTAACCATCCAAGTCACGCCGCTCGTTCCACGCAAAG
TACGCTCACACATTCTGCGGGGCCCCGAGGGATGGGCGTCGCCGCCCGGA
TCGCCATCGCTAGAAGAGGCTTCGTTGCGGACGACACCGGTGGGACTCGG
CGTGATACAGCCCGCGGTAGCCATGGTTGCCAACGCCGCCGGCGGTCGCC
ACCGCGAGGCGGGAGCTGGCTGCACGCTCTCCCGGCAGGAGCACGGCGGG
ACGAATCGGCAACAGCGGGTGCAAGGCCACGGCCGCAGCGTCGGCGACGG
GGGGTAGGCTTCGTTGCGGACGACACCGGTGGGACTCGGCGTGATACAGC
CCGCGGTAGCCATGGTTGCCAACGCCGCCGGCGGTCGCCACCGCGAGGCG
GGAGCTGGCTGCACGCTCTCCCGGCAGGAGCACGGCGGGACGAATCGGCA
ACAGCGGGTGCAAGGCCACGGCCGCAGCGTCGGCGACGGGGGGTAG
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