mRNA_L-elsbetiae_contig11287.1143.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11287.1143.1
Unique NamemRNA_L-elsbetiae_contig11287.1143.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11287.1143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11287contigL-elsbetiae_contig11287:2284..2717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size435
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.0556877-UTR-L-elsbetiae_contig11287:2283..23031622815340.0556877-UTR-L-elsbetiae_contig11287:2283..2303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11287 2284..2303 +
1691682848.0528817-UTR-L-elsbetiae_contig11287:2283..23031691682848.0528817-UTR-L-elsbetiae_contig11287:2283..2303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11287 2284..2303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.0760365-CDS-L-elsbetiae_contig11287:2303..27171622815340.0760365-CDS-L-elsbetiae_contig11287:2303..2717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11287 2304..2717 +
1691682848.0666497-CDS-L-elsbetiae_contig11287:2303..27171691682848.0666497-CDS-L-elsbetiae_contig11287:2303..2717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11287 2304..2717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11287.1143.1prot_L-elsbetiae_contig11287.1143.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11287 2304..2717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11287.1143.1

>prot_L-elsbetiae_contig11287.1143.1 ID=prot_L-elsbetiae_contig11287.1143.1|Name=mRNA_L-elsbetiae_contig11287.1143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MLRKRGLRVRTAVFTRSAAPRRRDINGCCRDLQPASLDSARSARGARSPI
KFSGPYSARALRCPLRRRGCSVQQQPPSQPPRSSSLFTSPLGRTEPTFPP
FDHFVPRRRPAISDRSEIVTSGYPRDPFPPRRRPAAWA
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mRNA from alignment at L-elsbetiae_contig11287:2284..2717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11287.1143.1 ID=mRNA_L-elsbetiae_contig11287.1143.1|Name=mRNA_L-elsbetiae_contig11287.1143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=434bp|location=Sequence derived from alignment at L-elsbetiae_contig11287:2284..2717+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCGGAGTAGAAATTCCCATGCTTCGAAAAAGAGGGCTCCGCGTGCGC
ACTGCTGTGTTTACACGGTCGGCGGCACCGCGCCGTCGGGATATCAACGG
CTGCTGTCGGGACCTGCAGCCTGCGTCCTTAGACTCGGCACGCAGCGCGC
GCGGCGCTCGCTCCCCGATAAAATTTAGCGGCCCGTACAGCGCGCGCGCG
CTCCGTTGTCCTTTGCGGCGGCGCGGGTGCTCTGTCCAGCAGCAGCCACC
TTCTCAGCCGCCACGCTCCTCTTCGTTGTTCACCTCTCCTCTTGGACGCA
CCGAACCGACGTTTCCGCCATTTGACCACTTTGTCCCCCGCCGGCGGCCG
GCCATTTCTGATCGCTCGGAAATTGTCACGTCAGGTTACCCAAGAGACCC
GTTCCCACCCCGACGGCGACCGGCTGCATGGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11287:2284..2717+

>mRNA_L-elsbetiae_contig11287.1143.1 ID=mRNA_L-elsbetiae_contig11287.1143.1|Name=mRNA_L-elsbetiae_contig11287.1143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig11287:2284..2717+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCGAAAAAGAGGGCTCCGCGTGCGCACTGCTGTGTTTACACGGTC
GGCGGCACCGCGCCGTCGGGATATCAACGGCTGCTGTCGGGACCTGCAGC
CTGCGTCCTTAGACTCGGCACGCAGCGCGCGCGGCGCTCGCTCCCCGATA
AAATTTAGCGGCCCGTACAGCGCGCGCGCGCTCCGTTGTCCTTTGCGGCG
GCGCGGGTGCTCTGTCCAGCAGCAGCCACCTTCTCAGCCGCCACGCTCCT
CTTCGTTGTTCACCTCTCCTCTTGGACGCACCGAACCGACGTTTCCGCCA
TTTGACCACTTTGTCCCCCGCCGGCGGCCGGCCATTTCTGATCGCTCGGA
AATTGTCACGTCAGGTTACCCAAGAGACCCGTTCCCACCCCGACGGCGAC
CGGCTGCATGGGCCATGCTTCGAAAAAGAGGGCTCCGCGTGCGCACTGCT
GTGTTTACACGGTCGGCGGCACCGCGCCGTCGGGATATCAACGGCTGCTG
TCGGGACCTGCAGCCTGCGTCCTTAGACTCGGCACGCAGCGCGCGCGGCG
CTCGCTCCCCGATAAAATTTAGCGGCCCGTACAGCGCGCGCGCGCTCCGT
TGTCCTTTGCGGCGGCGCGGGTGCTCTGTCCAGCAGCAGCCACCTTCTCA
GCCGCCACGCTCCTCTTCGTTGTTCACCTCTCCTCTTGGACGCACCGAAC
CGACGTTTCCGCCATTTGACCACTTTGTCCCCCGCCGGCGGCCGGCCATT
TCTGATCGCTCGGAAATTGTCACGTCAGGTTACCCAAGAGACCCGTTCCC
ACCCCGACGGCGACCGGCTGCATGGGCC
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