mRNA_L-elsbetiae_contig11286.1142.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11286.1142.1
Unique NamemRNA_L-elsbetiae_contig11286.1142.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11286.1142.1 vs. uniprot
Match: D8LEN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN7_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.910e-42
Identity = 104/149 (69.80%), Postives = 119/149 (79.87%), Query Frame = 1 
Query:    1 AALREEVERLTGRAKEAETAVQKLAQKQELVNQLRRKLRARDEDLKSFRERVEDLAETKTLLSAELEAANQRLTSSDREGRAS--SRPRAATAAAHAVRELEGANRTVATLRQQVQHQSEIIDRLREDDARDRSTRDRNDGVESAAAAA 441
            AALREEV++LT RAK+A++AVQKLAQKQELVNQLRR L+ RD  +K+F+ER EDLAETKTLLSAELEAANQRL +SDR+ R+S  SRP AA AAAH  RELE A R  ATLRQQVQHQSE++DRLR D  RDR         E+AAAAA
Sbjct:  588 AALREEVDKLTARAKDADSAVQKLAQKQELVNQLRRTLKVRDATIKTFQERAEDLAETKTLLSAELEAANQRLVASDRDSRSSGRSRPPAAAAAAHTARELEDAKREAATLRQQVQHQSEVVDRLRGDMNRDRE--------ETAAAAA 728
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BLAST of mRNA_L-elsbetiae_contig11286.1142.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.040e-36
Identity = 90/134 (67.16%), Postives = 105/134 (78.36%), Query Frame = 1 
Query:    1 AALREEVERLTGRAKEAETAVQKLAQKQELVNQLRRKLRARDEDLKSFRERVEDLAETKTLLSAELEAANQRLTSSDREGRASSRPRAATAA---AHAVRELEGANRTVATLRQQVQHQSEIIDRLREDDARDR 393
            A LREEV+RLT RAK+A++AVQKLAQKQ+LVNQLRR L+ RD  +K+F++R EDLAE KTLLSAELEAANQRL +SDR+ R+S R R        AH  RELE A R  ATLRQQVQHQSE++DRLR D  RDR
Sbjct: 2294 AELREEVDRLTARAKDADSAVQKLAQKQDLVNQLRRTLKVRDATIKTFQDRAEDLAEAKTLLSAELEAANQRLVASDRDSRSSCRSRPXXXXXXXAHTARELEDAKREAATLRQQVQHQSEVVDRLRGDMNRDR 2427
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11286.1142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEN7_ECTSI2.910e-4269.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTB3_9PHAE4.040e-3667.16Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11286contigL-elsbetiae_contig11286:4382..5882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size553
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11286.1142.1prot_L-elsbetiae_contig11286.1142.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11286 4382..5882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815339.9537444-CDS-L-elsbetiae_contig11286:4381..44891622815339.9537444-CDS-L-elsbetiae_contig11286:4381..4489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 4382..4489 -
1691682848.0094886-CDS-L-elsbetiae_contig11286:4381..44891691682848.0094886-CDS-L-elsbetiae_contig11286:4381..4489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 4382..4489 -
1622815339.970092-CDS-L-elsbetiae_contig11286:4508..47591622815339.970092-CDS-L-elsbetiae_contig11286:4508..4759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 4509..4759 -
1691682848.019878-CDS-L-elsbetiae_contig11286:4508..47591691682848.019878-CDS-L-elsbetiae_contig11286:4508..4759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 4509..4759 -
1622815339.9857807-CDS-L-elsbetiae_contig11286:5205..53141622815339.9857807-CDS-L-elsbetiae_contig11286:5205..5314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 5206..5314 -
1691682848.0298762-CDS-L-elsbetiae_contig11286:5205..53141691682848.0298762-CDS-L-elsbetiae_contig11286:5205..5314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 5206..5314 -
1622815340.00436-CDS-L-elsbetiae_contig11286:5798..58821622815340.00436-CDS-L-elsbetiae_contig11286:5798..5882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 5799..5882 -
1691682848.0390162-CDS-L-elsbetiae_contig11286:5798..58821691682848.0390162-CDS-L-elsbetiae_contig11286:5798..5882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11286 5799..5882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11286.1142.1

>prot_L-elsbetiae_contig11286.1142.1 ID=prot_L-elsbetiae_contig11286.1142.1|Name=mRNA_L-elsbetiae_contig11286.1142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
AALREEVERLTGRAKEAETAVQKLAQKQELVNQLRRKLRARDEDLKSFRE
RVEDLAETKTLLSAELEAANQRLTSSDREGRASSRPRAATAAAHAVRELE
GANRTVATLRQQVQHQSEIIDRLREDDARDRSTRDRNDGVESAAAAAAKP
QLRWRRTKPTTSEIASLRPNVSCSGWRGAVRCPR
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mRNA from alignment at L-elsbetiae_contig11286:4382..5882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11286.1142.1 ID=mRNA_L-elsbetiae_contig11286.1142.1|Name=mRNA_L-elsbetiae_contig11286.1142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1501bp|location=Sequence derived from alignment at L-elsbetiae_contig11286:4382..5882- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCTGCGGGAGGAGGTGGAGAGGCTCACGGGAAGGGCGAAGGAAGC
CGAAACCGCTGTCCAAAAGCTGGCGCAGAAGCAGGTACTGCTGTACATAG
GGCCCTAGTTTACGGCCTCGCGTTTCTGGAGGGGGCAGGGGGGGGGGGGG
GGGGGGGGGAGAGAGAAAACATGTCGGGTTTCGCTTGCGGTGGCGATTGC
GGTGGCCGCGGGGGATTTTGGGCAGCTGGTGGTGTTGATGTTGTCGTTGT
CGTTGCGTGTTGTTGCTTGTTCCCGCTGATGTGATTCGATAGCTTGCTTC
TTAGGCTGTTATTCTTGTTCGTGGGGGGGGTCCCGTGTTATTATTTTGGG
GGGGGGTCCCGTACCTAATCGTCGACCATCCGCGTTCGATAGTTTGAGGC
CTTGGAACACGAGACCAGCACCGTGACGCACAGGGCGCACACAACCCGTC
CCTTGCTATTAGGTAACTGGGCACCCTGAGCCCACCCCCCTCCCTGGTGC
TTGCTGCCTCTGTACTAGGTGCACGCAATAAAACCAAGTGGCCCCCCTCT
CTGTTTTCTCTCTGGCAGGAATTGGTGAACCAGCTTCGGCGGAAGCTCAG
GGCGCGGGATGAAGACCTGAAGAGCTTCCGGGAGCGCGTAGAAGATCTCG
CTGAGACCAAGACGCTCCTCTCAGCCGGTGGGTGAATTTGACGTTCCGCC
TCGTTGTCGTGTTCAGTGGCTGTCGTCACGTTTTGTGCATTTTGTGTACT
GGTGTGTTTTCTGCAATCGGCTCCCTCCCTCCCTCCCTCTCTATCTTGGT
GCCGCTCCCTATCATCCCGGTGCCTAGCAAGCAATGCGCAGCCTCTCGGC
ACAACGTAAACTCTGTAGCAAATCAGTTCACGTGCGATGCTCTTCGACTT
CTGGTCGATTTCACTCTCCTTGCCGTAATTGTCCCGCAGATTGGTTTCCG
CGCATCCCATGCTCCTTCGTTGTTGCATTGCTCTCTTCTTCTAGCTGCCC
GTGCCACTGGATGGGTTCGTCTGTGGCATCACCGGCTGGCATCACGTCGT
CTGTGGCTTTACCCTTCTGCCCCTCCCTGCGCTCCGCCCCCCGCCTCCTT
ACGCCGCGTTTTGCCGCCGTCAGAGCTGGAAGCCGCAAATCAGCGCCTGA
CTTCGAGCGACCGAGAAGGCCGGGCATCCAGTAGACCACGGGCCGCGACG
GCTGCAGCGCACGCCGTCAGAGAGCTGGAGGGCGCGAACAGGACGGTGGC
GACGCTGCGGCAGCAAGTGCAGCACCAATCGGAGATCATCGATCGCCTCC
GGGAGGACGACGCCAGAGACCGCAGCACTCGCGACCGCAACGACGGCGTG
GAATCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGAAGCCGC
AGCTGAGGTGGCGCAGAACGAAGCCGACGACCTCAGAGATCGCCTCGCTG
AGGCCGAACGTGAGTTGCAGCGGATGGAGAGGCGCAGTGCGATGTCCGAG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11286:4382..5882-

>mRNA_L-elsbetiae_contig11286.1142.1 ID=mRNA_L-elsbetiae_contig11286.1142.1|Name=mRNA_L-elsbetiae_contig11286.1142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig11286:4382..5882- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCTGCGGGAGGAGGTGGAGAGGCTCACGGGAAGGGCGAAGGAAGC
CGAAACCGCTGTCCAAAAGCTGGCGCAGAAGCAGGCGGCGCTGCGGGAGG
AGGTGGAGAGGCTCACGGGAAGGGCGAAGGAAGCCGAAACCGCTGTCCAA
AAGCTGGCGCAGAAGCAGGAATTGGTGAACCAGCTTCGGCGGAAGCTCAG
GGCGCGGGATGAAGACCTGAAGAGCTTCCGGGAGCGCGTAGAAGATCTCG
CTGAGACCAAGACGCTCCTCTCAGCCGGAATTGGTGAACCAGCTTCGGCG
GAAGCTCAGGGCGCGGGATGAAGACCTGAAGAGCTTCCGGGAGCGCGTAG
AAGATCTCGCTGAGACCAAGACGCTCCTCTCAGCCGAGCTGGAAGCCGCA
AATCAGCGCCTGACTTCGAGCGACCGAGAAGGCCGGGCATCCAGTAGACC
ACGGGCCGCGACGGCTGCAGCGCACGCCGTCAGAGAGCTGGAGGGCGCGA
ACAGGACGGTGGCGACGCTGCGGCAGCAAGTGCAGCACCAATCGGAGATC
ATCGATCGCCTCCGGGAGGACGACGCCAGAGACCGCAGCACTCGCGACCG
CAACGACGGCGTGGAATCGGCGGCGGCGGCGGCGGCGAGCTGGAAGCCGC
AAATCAGCGCCTGACTTCGAGCGACCGAGAAGGCCGGGCATCCAGTAGAC
CACGGGCCGCGACGGCTGCAGCGCACGCCGTCAGAGAGCTGGAGGGCGCG
AACAGGACGGTGGCGACGCTGCGGCAGCAAGTGCAGCACCAATCGGAGAT
CATCGATCGCCTCCGGGAGGACGACGCCAGAGACCGCAGCACTCGCGACC
GCAACGACGGCGTGGAATCGGCGGCGGCGGCGGCGGCGAAGCCGCAGCTG
AGGTGGCGCAGAACGAAGCCGACGACCTCAGAGATCGCCTCGCTGAGGCC
GAACGTGAGTTGCAGCGGATGGAGAGGCGCAGTGCGATGTCCGAGGAAGC
CGCAGCTGAGGTGGCGCAGAACGAAGCCGACGACCTCAGAGATCGCCTCG
CTGAGGCCGAACGTGAGTTGCAGCGGATGGAGAGGCGCAGTGCGATGTCC
GAGG
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