mRNA_L-elsbetiae_contig11282.1141.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11282.1141.1
Unique NamemRNA_L-elsbetiae_contig11282.1141.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11282.1141.1 vs. uniprot
Match: D8LKH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 8.840e-21
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 2 
Query:  143 RYKLFSKLMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVRV 286
            +Y LFSKL+GDFR+SYA SWHRLE +WVGFPLPHDISSNV +KWKV V
Sbjct:  115 KYDLFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVLV 162
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BLAST of mRNA_L-elsbetiae_contig11282.1141.1 vs. uniprot
Match: A0A6H5JJ50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ50_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-20
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 2 
Query:  143 RYKLFSKLMGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVRV 286
            +Y+LFSKL+GDFR+SYA +WHRLE +WVGFPLPHDISSNV VKWKV V
Sbjct:  133 KYELFSKLVGDFRESYASNWHRLEQVWVGFPLPHDISSNVAVKWKVLV 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11282.1141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKH4_ECTSI8.840e-2179.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ50_9PHAE1.370e-2079.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11282contigL-elsbetiae_contig11282:3091..3442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog2880.D8LKH4
Preferred nameVASH1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000768,GO:0001525,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001936,GO:0001937,GO:0001938,GO:0001944,GO:0003006,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006949,GO:0006950,GO:0007275,GO:0008150,GO:0008284,GO:0008285,GO:0009611,GO:0009653,GO:0009790,GO:0009792,GO:0009893,GO:0009987,GO:0010468,GO:0010594,GO:0010596,GO:0010604,GO:0010628,GO:0010632,GO:0010633,GO:0012505,GO:0016043,GO:0016525,GO:0019222,GO:0022414,GO:0022603,GO:0030334,GO:0030336,GO:0032501,GO:0032502,GO:0032879,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043535,GO:0043537,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045026,GO:0045177,GO:0045765,GO:0045766,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050678,GO:0050679,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051271,GO:0060255,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061025,GO:0061458,GO:0065007,GO:0071840,GO:0072358,GO:0072359,GO:0080134,GO:0080135,GO:0090342,GO:1901342,GO:1901343,GO:1901490,GO:1901491,GO:1904018,GO:2000026,GO:2000145,GO:2000146,GO:2000181,GO:2000772
EggNOG free text desc.negative regulation of lymphangiogenesis
EggNOG OGs2BW4P@1,2QPPX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionVasohibin
Ec32 orthologEc-16_002970.1
Exons1
Model size352
Cds size186
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815339.8963623-UTR-L-elsbetiae_contig11282:3090..32561622815339.8963623-UTR-L-elsbetiae_contig11282:3090..3256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11282 3091..3256 +
1691682847.9885097-UTR-L-elsbetiae_contig11282:3090..32561691682847.9885097-UTR-L-elsbetiae_contig11282:3090..3256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11282 3091..3256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815339.910369-CDS-L-elsbetiae_contig11282:3256..34421622815339.910369-CDS-L-elsbetiae_contig11282:3256..3442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11282 3257..3442 +
1691682848.00042-CDS-L-elsbetiae_contig11282:3256..34421691682848.00042-CDS-L-elsbetiae_contig11282:3256..3442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11282 3257..3442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11282.1141.1prot_L-elsbetiae_contig11282.1141.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11282 3257..3442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11282.1141.1

>prot_L-elsbetiae_contig11282.1141.1 ID=prot_L-elsbetiae_contig11282.1141.1|Name=mRNA_L-elsbetiae_contig11282.1141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
MGDFRDSYAGSWHRLEHIWVGFPLPHDISSNVPVKWKVRVGNLLLCSPNM
SNRPRRASKLL*
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mRNA from alignment at L-elsbetiae_contig11282:3091..3442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11282.1141.1 ID=mRNA_L-elsbetiae_contig11282.1141.1|Name=mRNA_L-elsbetiae_contig11282.1141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=352bp|location=Sequence derived from alignment at L-elsbetiae_contig11282:3091..3442+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGGGCTCATGGTGGACGGTCTGAGGGGCACCGTTGCACGGTGGCAGA
ATTCACGAGAGTTTGCCTGCGTCGGATATACAAGTCTCGTGCTTCGTGCC
ACTTTGATGGTTGAATATGCTGCCATGTTCCACCCAACGTGAAGGTACAA
GCTCTTTTCTAAGCTGATGGGCGACTTCAGAGACTCGTACGCCGGGAGCT
GGCACCGTTTGGAACATATCTGGGTTGGATTTCCCCTTCCTCACGACATA
TCTTCCAACGTGCCCGTGAAGTGGAAGGTACGTGTAGGGAATCTACTTCT
GTGTTCTCCAAATATGTCGAACCGGCCCCGGCGCGCCTCAAAACTGCTCT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11282:3091..3442+

>mRNA_L-elsbetiae_contig11282.1141.1 ID=mRNA_L-elsbetiae_contig11282.1141.1|Name=mRNA_L-elsbetiae_contig11282.1141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig11282:3091..3442+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGACTTCAGAGACTCGTACGCCGGGAGCTGGCACCGTTTGGAACA
TATCTGGGTTGGATTTCCCCTTCCTCACGACATATCTTCCAACGTGCCCG
TGAAGTGGAAGGTACGTGTAGGGAATCTACTTCTGTGTTCTCCAAATATG
TCGAACCGGCCCCGGCGCGCCTCAAAACTGCTCTGAATGGGCGACTTCAG
AGACTCGTACGCCGGGAGCTGGCACCGTTTGGAACATATCTGGGTTGGAT
TTCCCCTTCCTCACGACATATCTTCCAACGTGCCCGTGAAGTGGAAGGTA
CGTGTAGGGAATCTACTTCTGTGTTCTCCAAATATGTCGAACCGGCCCCG
GCGCGCCTCAAAACTGCTCTGA
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