mRNA_L-elsbetiae_contig11279.1138.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11279.1138.1
Unique NamemRNA_L-elsbetiae_contig11279.1138.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11279.1138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11279contigL-elsbetiae_contig11279:1812..2608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size797
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11279.1138.1prot_L-elsbetiae_contig11279.1138.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11279 1849..2307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815339.5388997-UTR-L-elsbetiae_contig11279:1811..18481622815339.5388997-UTR-L-elsbetiae_contig11279:1811..1848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11279 1812..1848 +
1691682847.8330042-UTR-L-elsbetiae_contig11279:1811..18481691682847.8330042-UTR-L-elsbetiae_contig11279:1811..1848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11279 1812..1848 +
1622815339.5695186-UTR-L-elsbetiae_contig11279:2307..26081622815339.5695186-UTR-L-elsbetiae_contig11279:2307..2608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11279 2308..2608 +
1691682847.8499627-UTR-L-elsbetiae_contig11279:2307..26081691682847.8499627-UTR-L-elsbetiae_contig11279:2307..2608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11279 2308..2608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815339.5519054-CDS-L-elsbetiae_contig11279:1848..23071622815339.5519054-CDS-L-elsbetiae_contig11279:1848..2307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11279 1849..2307 +
1691682847.8421133-CDS-L-elsbetiae_contig11279:1848..23071691682847.8421133-CDS-L-elsbetiae_contig11279:1848..2307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11279 1849..2307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11279.1138.1

>prot_L-elsbetiae_contig11279.1138.1 ID=prot_L-elsbetiae_contig11279.1138.1|Name=mRNA_L-elsbetiae_contig11279.1138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MQEERKPWLHKLPWTQQRENRNLKKWRQFPYSRPNQTFGDTFYTESQDKP
WLHRSSPSRGKSVDTRPVAKSSPYGHPGLKGLNPNVTMPKVLSTRVDRSI
NPKGEDDDTRHIMVENTRSLAFYTRSVRLHLPSPLVISSSCTPWGGTLKV
EG*
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mRNA from alignment at L-elsbetiae_contig11279:1812..2608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11279.1138.1 ID=mRNA_L-elsbetiae_contig11279.1138.1|Name=mRNA_L-elsbetiae_contig11279.1138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=797bp|location=Sequence derived from alignment at L-elsbetiae_contig11279:1812..2608+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGGTGAAACAAGAGGGTGCATCGCTATCCCACAGATGCAGGAGGAAC
GTAAACCATGGTTACACAAGCTTCCGTGGACACAGCAGAGAGAAAATCGA
AACCTAAAAAAATGGCGACAGTTTCCGTACTCAAGGCCAAATCAAACCTT
TGGCGACACTTTCTATACTGAAAGCCAAGATAAACCTTGGCTACACAGAA
GTTCTCCCTCTAGGGGGAAAAGCGTTGATACCAGGCCTGTCGCCAAATCG
TCGCCATATGGGCATCCAGGTCTAAAAGGGTTAAACCCCAATGTTACCAT
GCCCAAGGTGCTGAGCACTCGAGTTGACAGGTCGATAAATCCCAAGGGAG
AGGATGACGATACTCGACACATCATGGTGGAAAACACTAGATCGTTGGCC
TTCTACACACGTAGCGTTCGCCTGCATCTCCCTTCTCCCCTCGTGATATC
GTCCAGTTGCACACCATGGGGGGGTACTCTCAAGGTTGAGGGTTAGGGTG
GGTACGTTATCTTCCGTCGTTGGTACCCACACACTTGCAGCATGTTCTAT
GCACTAACATCGATACGATAGTGCAAAGCTACCACAAATCGTTACCGACT
GCTGTGGTGGCCTGCTTCAGCTTCTCTAGGCCAACGACTTCGGGGTCACG
ATTTTGATACAATTCCTCGCGTAGACACTCTTGCCGAGTCACCTGAACTC
TCCCGAAATGCCAAACATGCAAGAAACAAAAATAAGGAACACGGCCACGA
CAGAATAGCGGACAGACGTAAACGGGTGACTCTCGAATCGTTGTTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11279:1812..2608+

>mRNA_L-elsbetiae_contig11279.1138.1 ID=mRNA_L-elsbetiae_contig11279.1138.1|Name=mRNA_L-elsbetiae_contig11279.1138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig11279:1812..2608+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGAGGAACGTAAACCATGGTTACACAAGCTTCCGTGGACACAGCA
GAGAGAAAATCGAAACCTAAAAAAATGGCGACAGTTTCCGTACTCAAGGC
CAAATCAAACCTTTGGCGACACTTTCTATACTGAAAGCCAAGATAAACCT
TGGCTACACAGAAGTTCTCCCTCTAGGGGGAAAAGCGTTGATACCAGGCC
TGTCGCCAAATCGTCGCCATATGGGCATCCAGGTCTAAAAGGGTTAAACC
CCAATGTTACCATGCCCAAGGTGCTGAGCACTCGAGTTGACAGGTCGATA
AATCCCAAGGGAGAGGATGACGATACTCGACACATCATGGTGGAAAACAC
TAGATCGTTGGCCTTCTACACACGTAGCGTTCGCCTGCATCTCCCTTCTC
CCCTCGTGATATCGTCCAGTTGCACACCATGGGGGGGTACTCTCAAGGTT
GAGGGTTAGATGCAGGAGGAACGTAAACCATGGTTACACAAGCTTCCGTG
GACACAGCAGAGAGAAAATCGAAACCTAAAAAAATGGCGACAGTTTCCGT
ACTCAAGGCCAAATCAAACCTTTGGCGACACTTTCTATACTGAAAGCCAA
GATAAACCTTGGCTACACAGAAGTTCTCCCTCTAGGGGGAAAAGCGTTGA
TACCAGGCCTGTCGCCAAATCGTCGCCATATGGGCATCCAGGTCTAAAAG
GGTTAAACCCCAATGTTACCATGCCCAAGGTGCTGAGCACTCGAGTTGAC
AGGTCGATAAATCCCAAGGGAGAGGATGACGATACTCGACACATCATGGT
GGAAAACACTAGATCGTTGGCCTTCTACACACGTAGCGTTCGCCTGCATC
TCCCTTCTCCCCTCGTGATATCGTCCAGTTGCACACCATGGGGGGGTACT
CTCAAGGTTGAGGGTTAG
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