mRNA_L-elsbetiae_contig112.1077.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig112.1077.1
Unique NamemRNA_L-elsbetiae_contig112.1077.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig112.1077.1 vs. uniprot
Match: A0A6H5K707_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K707_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.980e-14
Identity = 75/142 (52.82%), Postives = 82/142 (57.75%), Query Frame = -1 
Query:    1 LDGTALHAAAWHGEVECVRALLALGAQVDARDECGRSPLFQACRCGGXXXXXXSPDGCKAVCELVGXXXXXXXXXXXXXXXXXXXXXYGHAATVRLLLRHDADETARCDLGKTPGEVALAEARRAARRXXXGAXXXXGDDNG 426
            L  TALHAAAWHGE  CVRALL LGA V+ARD CGR+PLFQA +CGG         GC+ +     XXXXXXXXXXXXXXXXXXXXX G A  VR                   G+V+  EA RAARR   G     G   G
Sbjct:  381 LGATALHAAAWHGEHACVRALLELGADVNARDGCGRTPLFQASKCGGRNGGG----GCETIXXXXXXXXXXXXXXXXXXXXXXXXXXXGWADAVRXXXXXXXXXXXXXXXXXXXGDVSRREALRAARRRRKGFRTADGGGGG 518
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BLAST of mRNA_L-elsbetiae_contig112.1077.1 vs. uniprot
Match: D8LHM6_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-11
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = -1 
Query:  289 LDGTALHAAAWHGEVECVRALLALGAQVDARDECGRSPLFQACRCG 426
            L  TALHAAAWHGE  C R LL LGA VDARDECGR+PLFQA R G
Sbjct:  315 LGATALHAAAWHGEHACARVLLELGADVDARDECGRTPLFQASRRG 360
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig112.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K707_9PHAE5.980e-1452.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHM6_ECTSI1.050e-1176.09Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig112contigL-elsbetiae_contig112:11891..12316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.7643056-CDS-L-elsbetiae_contig112:11890..123161622815332.7643056-CDS-L-elsbetiae_contig112:11890..12316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig112 11891..12316 +
1691682844.3007283-CDS-L-elsbetiae_contig112:11890..123161691682844.3007283-CDS-L-elsbetiae_contig112:11890..12316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig112 11891..12316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig112.1077.1prot_L-elsbetiae_contig112.1077.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig112 11891..12316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig112.1077.1

>prot_L-elsbetiae_contig112.1077.1 ID=prot_L-elsbetiae_contig112.1077.1|Name=mRNA_L-elsbetiae_contig112.1077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
AVVVAPARAGAAIAAACGSPGFCQSDFPRGLPQVTPCRLVRVVAQQKAHR
CRVAIAARYVERRVPILASGVHIGAGPHQLTNSLAAVGRAAAATAAAAPT
GLEQGGATAFVPGVNLSAEGQQRADTLDLPVPRRRMEGGSVK
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mRNA from alignment at L-elsbetiae_contig112:11891..12316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig112.1077.1 ID=mRNA_L-elsbetiae_contig112.1077.1|Name=mRNA_L-elsbetiae_contig112.1077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig112:11891..12316+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTTGTCGTCGCCCCCGCCCGCGCTGGCGCCGCGATTGCGGCGGCGTG
CGGCTCGCCGGGCTTCTGCCAAAGCGACTTCCCCCGGGGTCTTCCCCAGG
TCACACCGTGCCGTCTCGTCCGCGTCGTGGCGCAGCAAAAGGCGCACCGT
TGCCGCGTGGCCATAGCGGCACGCTACGTGGAGCGGCGTGTCCCCATCCT
TGCTTCCGGCGTTCACATCGGCGCCGGCCCCCACCAGCTCACAAACAGCC
TTGCAGCCGTCGGGAGAGCCGCCGCCGCCACCGCCGCCGCCGCACCTACA
GGCTTGGAACAGGGGGGAGCGACCGCATTCGTCCCGGGCGTCAACCTGAG
CGCCGAGGGCCAGCAGCGCGCGGACACACTCGACCTCCCCGTGCCACGCC
GCCGCATGGAGGGCGGTTCCGTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig112:11891..12316+

>mRNA_L-elsbetiae_contig112.1077.1 ID=mRNA_L-elsbetiae_contig112.1077.1|Name=mRNA_L-elsbetiae_contig112.1077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig112:11891..12316+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTTGTCGTCGCCCCCGCCCGCGCTGGCGCCGCGATTGCGGCGGCGTG
CGGCTCGCCGGGCTTCTGCCAAAGCGACTTCCCCCGGGGTCTTCCCCAGG
TCACACCGTGCCGTCTCGTCCGCGTCGTGGCGCAGCAAAAGGCGCACCGT
TGCCGCGTGGCCATAGCGGCACGCTACGTGGAGCGGCGTGTCCCCATCCT
TGCTTCCGGCGTTCACATCGGCGCCGGCCCCCACCAGCTCACAAACAGCC
TTGCAGCCGTCGGGAGAGCCGCCGCCGCCACCGCCGCCGCCGCACCTACA
GGCTTGGAACAGGGGGGAGCGACCGCATTCGTCCCGGGCGTCAACCTGAG
CGCCGAGGGCCAGCAGCGCGCGGACACACTCGACCTCCCCGTGCCACGCC
GCCGCATGGAGGGCGGTTCCGTCAAGGCCGTTGTCGTCGCCCCCGCCCGC
GCTGGCGCCGCGATTGCGGCGGCGTGCGGCTCGCCGGGCTTCTGCCAAAG
CGACTTCCCCCGGGGTCTTCCCCAGGTCACACCGTGCCGTCTCGTCCGCG
TCGTGGCGCAGCAAAAGGCGCACCGTTGCCGCGTGGCCATAGCGGCACGC
TACGTGGAGCGGCGTGTCCCCATCCTTGCTTCCGGCGTTCACATCGGCGC
CGGCCCCCACCAGCTCACAAACAGCCTTGCAGCCGTCGGGAGAGCCGCCG
CCGCCACCGCCGCCGCCGCACCTACAGGCTTGGAACAGGGGGGAGCGACC
GCATTCGTCCCGGGCGTCAACCTGAGCGCCGAGGGCCAGCAGCGCGCGGA
CACACTCGACCTCCCCGTGCCACGCCGCCGCATGGAGGGCGGTTCCGTCA
AG
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