mRNA_L-elsbetiae_contig11157.1043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11157.1043.1
Unique NamemRNA_L-elsbetiae_contig11157.1043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11157.1043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11157contigL-elsbetiae_contig11157:534..5323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size487
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11157.1043.1prot_L-elsbetiae_contig11157.1043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11157 534..3336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815329.6942277-CDS-L-elsbetiae_contig11157:533..5721622815329.6942277-CDS-L-elsbetiae_contig11157:533..572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11157 534..572 -
1691682842.3408806-CDS-L-elsbetiae_contig11157:533..5721691682842.3408806-CDS-L-elsbetiae_contig11157:533..572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11157 534..572 -
1622815329.7032642-CDS-L-elsbetiae_contig11157:1544..16981622815329.7032642-CDS-L-elsbetiae_contig11157:1544..1698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11157 1545..1698 -
1691682842.3500595-CDS-L-elsbetiae_contig11157:1544..16981691682842.3500595-CDS-L-elsbetiae_contig11157:1544..1698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11157 1545..1698 -
1622815329.7133503-CDS-L-elsbetiae_contig11157:3232..33361622815329.7133503-CDS-L-elsbetiae_contig11157:3232..3336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11157 3233..3336 -
1691682842.3582442-CDS-L-elsbetiae_contig11157:3232..33361691682842.3582442-CDS-L-elsbetiae_contig11157:3232..3336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11157 3233..3336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815329.7223723-UTR-L-elsbetiae_contig11157:4793..49011622815329.7223723-UTR-L-elsbetiae_contig11157:4793..4901Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11157 4794..4901 -
1691682842.3682003-UTR-L-elsbetiae_contig11157:4793..49011691682842.3682003-UTR-L-elsbetiae_contig11157:4793..4901Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11157 4794..4901 -
1622815329.733902-UTR-L-elsbetiae_contig11157:5241..53231622815329.733902-UTR-L-elsbetiae_contig11157:5241..5323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11157 5242..5323 -
1691682842.3763855-UTR-L-elsbetiae_contig11157:5241..53231691682842.3763855-UTR-L-elsbetiae_contig11157:5241..5323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11157 5242..5323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11157.1043.1

>prot_L-elsbetiae_contig11157.1043.1 ID=prot_L-elsbetiae_contig11157.1043.1|Name=mRNA_L-elsbetiae_contig11157.1043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MARTGRDQGKPKGKREPATQRGNRGALVNKRGKSSSHQFKSEWCTDMNCP
NAGDGQHVHLLNSLRMAMRLAEKYDIVLPRLTFIQDVGASSIFNRESP*
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mRNA from alignment at L-elsbetiae_contig11157:534..5323-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11157.1043.1 ID=mRNA_L-elsbetiae_contig11157.1043.1|Name=mRNA_L-elsbetiae_contig11157.1043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4790bp|location=Sequence derived from alignment at L-elsbetiae_contig11157:534..5323- (Laminarionema elsbetiae ELsaHSoW15)
CGCGTAACGCGTCTCCCCACTTCAAAAAAGGCTGGCACAGCCCTCCACCG
CCGCGCTTCGGCGTGGGCAGCACAAAGAAAGGTACGATCCCTGCTCGTGG
TCTATGCGTGCCGTCGCTCTGCCCCCTCAGAGCGTGCACTCGAAGGTCTG
TGCTCTGTCTCTCTCAGAGCCATCACACGTTTTGGATGACGCTAGAAGAG
CGTAGAGAAATGTTGGTATGCACATGTGTATAGATAGATGCATATTTAGC
TCCCAGGCCCCGGTCGGTTCTGACCCACAACCAGACAACCAGGATAGAAC
GTGGCGCGGTCAATCTATCGATGGCACTTACTTGTGTGACGATTTGCGGT
TGCTCTGCTGAAGTTACATTTCCCGCTGCCTCTACTTCTGCTGTTTGTCC
AGCCTGCCTGGCCCGGGCCTCTCTGCCTCGCCCGGGCCTCTCTGCCTCGC
CAAACAAACCCAGCACGGTCATATTCTGCTCTCTTCGTGCGGGTCGGAAT
CGGAGTACGGGTTAACAAGAGAAGGTAAAGGTAAGCTTCCGACTACGGCC
GCGCTGATCGTGCATTTTGTCCACATATTTATCTCTTGGTCTGCAAGCTG
ATTTTTTTAAAAGTCAACGTCAGAATTGCCGTTGGGGTATCTTGAAGTCT
ACATCGCGTTTGTGAGTATTCTAGAGTCCATCCACAAAGCTGACACGCGA
CAGCAGTATGCAGCTCACCCCCAAGCATGTAGCTTTTCGGATCTTCTGAT
GGCTCTAGCACTTCTGTGACCACGCGCCGTGAGTTGCTAGATTTTTTGGA
AGAAGCAATCTCGATTATACGAGCTAATGAGAAAGAAGTACAACAGGAGC
TACAGACCTGTCCTTTCTTCGTCAACAAGACAAGTCTATGCATGAGGTGT
GCGACGGATCCAACGCGTGGTGGTAGTACTTGACGTGAAGGATGATGGGT
GAGGTGCGCACGCAGCCAAAGCTGTGCGTAGTACGCGTACTGCTGTAGAG
CGCACGGTCAGTCATGCTGCAGGTAGGTTGCAACTATCTATGTAGACTAT
ACGGCTGATGAGAGATGCACACGCTACGCCACAGGCATCTATTCGCCACC
AACAACGCAGTTCGTTCAACTCCTTTCGCGGCGAGGTGGGCTGCCATCGG
GAGCGGTTCTGAGACGACAATGTGTGTGAAAAAAACACTTGACCTACTTT
TTCCTGTAGTACGCCGGTAGTTATGGGGGCGGTGAGGGGGGGGGGCACAG
AGTACTTTGGATACAGGGGCTCAGTGACGAGCACGATATGATTGATTTTT
TAAATGCAATTGTTTTGGGGTATGCTGAAACTGACAGCAAAGGCTCTCCG
GAAAGCACCACTTTCCAGTTCGGCCGTTAGCGTCCCGTTGCGCTACCCCT
CGACACACTCCAACGCAACAGCTTGCATTTCTCTGCTGATTGAAACTCCG
CACCTAGTTAGTTTTTAGCTGTCTTGAAGGCAGTTATTTTGCTCTTCAAA
GGTGCAAAAATGGATGTTCTGGAAAGGAATGTAAACACGGATCTCTCTGA
CGCTTGGTGTTCACGAAGGGCCATCGAGCGAGGCCCTCACAGGCAAGAAC
AGCGCAAGCCGCTGGCAGGGCCCACTAATATGGTGTGTAGGAGCCGTCGC
ATGCCCCGGGTAGCGGTAGCAGGCAGCTGTGAGTCACGCTTTCGATGTGC
TCGTGCACACGATCGCTTTTTTCAACAGTCTTTTTTGCGGTGAATCGGGT
GAATATTTGAGACTGCACCCCAGAGCCTAACACCGTGACTTTTGCACCGA
TCAAAAAACGGACTCGACGCGATTGTAGCCCGGCTGTTTTTAAAGAGTGT
GGGATAGAGGAGAGGGTGCACAGCAAATTTGCACGGACTTACATATTCAA
ACGCGAGAGGGTTTGTATATAAAACGGCCTAAAAGTCCTCCCGAACCTTA
TCCCCGCCTTGCCGCCGTGCATGCATGTGTACTCAAGATGGCCAGGACAG
GGCGAGACCAAGGGAAGCCGAAGGGCAAGAGGGAGCCGGCGACGCAGCGG
GGCAACAGGGGAGCACTGGTTAACAAGCGCGGGAAGAGCAGGCAAGGGGG
GAAACATGAGCATAACTATCTCTTTTTGAAGATTGATTTCGTTTTTTTTT
CAGCTGGTCCTTGGATGAAGAGGTGTATAGATGAGAAACAAAGTTTGCCT
CAAAGCGCCGTGCGGTGAACTTGTTTTTAATCGCTTCAAATGAGCGAACG
CAAGTTATAGCCGTTTCGGCTGTGTGTGAAAGCGGACAAAGTGTGGCACC
GCTAGCCTCTCGTTCTGTGATGATTTTACAAACCCTCGCATGAACAGGAC
ACAACGAAGTTGGGCAATCGACCGATGAAACGAGAAAGAGGGAAACGTGC
GAACGCTGTCGCCGTGGCACACTAACGATCTGAAGTGCGCTGTGATAAAT
GGGATCTGGGATCTGCCCGTAGCTACCTGTGTTGTTGTGGTACCGCTCGG
AAATTGCTGGCAGCAAGAAGAAAATTGCTGCGCCAGCTTTGCGCTTCGAA
CCAAGGGACAGATCCGACCGTTTGAGAGAGAAGACTAGACTCCCCAAGGC
TGTTAGACAAGTCGGGACGGCGTGTGCGTGTGGATTATCAGAACTTGACG
CACTCGGTCTCCGCCGTTACCGGGCTAACGGCCGGAAGTTAGTGTGGAGC
ATTGCGATCTGCATGTGGTTGCATAGTTTGCAGGCAGAGGTGCAGCATGG
AAGGGGCCACGTGAGTCGCAGCCGACGAAACCGGATTTCGTGCCTCGGTT
CCAAAGTGGCCCTCTCTGGGAGGCGAAAACAAATTGCCCGTTCAAGAATA
ATCTAACAACGGAGGAGGTTTCACTCGCAACGCTGAGTGCACTCGCGCGA
AGTTGCTGTAACGCGTGCATAACATCGCTCGACCGCTGCGAGGTGCACTC
GGCATTGCGGTCCTTTCTCCTGTCTTCACGATAGTCGTCTTTGGCTTGAG
CATTGCGAGCCTGGGAAGTTAATAAAAATGTCAGTGTGCCCCGGGTGAAC
CATCGCTTGCTTTTGAGACGATCGATCGTCCAACCGTTGTCTTGATTGAC
TTGGTTTTAACACAGCGAGCCCGAGAAGTTATTGTAAAGACTGTTGATTG
TGCCTCGGAGGTATGTAGAAAACTATCGCGTGTTTTTCGAGACAACGGCC
TGTATGAAGACAGTTTACCTGACCACCCTGTCGAGCTTCAGAGGCACGGG
CCTGTGGATGCTTCAGTTCTCAGCTGAGGCCTAAACACCCGGAGACAAGA
CTTTCTATACCTGTCGAACGACTAACGAACTGATAACTTTGTATTAAGAA
TACCTTCCGTTTGGCGCTGGGGTGGCGCAAGGTATAATATTCGAACAGTG
AACGGGCATCTGGACAATCACACTTGGTGGCACCTCTTACATGGTACGAA
TGCTTTGATCAGCACGCACGGGCACCCGCGACAGAATCAAACTCGTCTAT
TGTAGAGCAGGGGCTCGGCAAGACGGGCTTATTCACGCACTCCACAACAC
GCGCGCGAAGCTTTTCGTGACCCTTGCTGCGTCCGTCTCTCCCGCTGTTG
CCGTGCTTTTTTGACTTTACCACAGTTCTCATCAGTTCAAGAGTGAGTGG
TGCACCGACATGAATTGCCCGAACGCCGGGGATGGCCAGCATGTCCACCT
GTTGAACAGTCTTCGGATGGCCATGCGCCTGGCTGAGAAGTACGACATCG
TGCTGCCCCGCCTGACCTTCATTCAAGATGTGAGCCCATTCGGATTGAAG
ATCAGGCGTTATAGCTGATTGAAGGGCTTCGGGGGCAAGCCCCCCCCTCG
CCCTCCATGATAAGCATTGCGTTACATGTTCCGATCATGTTCGGCCATCT
TGTTTATTTTGTTTGTAGGCTGAGCCGCATACCAAGTCGGCCCATGAAAG
ATCTGCCGTACGTACATTTCGTGTTGCCTGTACGGCAGTGTTTAGACTGG
TCGTGGTTTTTGTGTTGGACGGAATGGAATGGATTAGGGGCGACGCTGGC
ACACAAAAGACGCCGGTGTTACTACGTGCACAGACAGAAAGACACGCGCA
CACGCCGACACATTGCACAGCACATGGGAACGGCGCAAACGCAACTCAAC
CGAAAGCCAAAGCGTTGCTTCACGCGCTCAAACCACAGTCCTTCCACTGT
CAGCTCAAGTACAGAGTACGTACCATTGACCGGGTGAAGAAGTAGATGCG
CCCGGAGAGCCGCGCGGCGTTGGTACATGCCGGAGATGGCACTTTTTGCC
TTGCCCATGTACGCGCTTCTGGGTATGATAGCTTTCGTATAGTCTGTGAG
TCTCACCGAAACTGCGCAGCGCGCAGGCACGACCCACGCTGTACGGGGCT
GCTCAGAGCCGCAAAAAACTGGAGCGAAAACTGGCCAGGAAAAGCGTAAA
GCGGCCGAAAAGCGTTTCTCGGCGCACGAGCGAACAGTATTTTGAAATGG
AGGCCTCAAAGCGACTTACGGTAGATCTGTAGATTCAGCTTGAGGCAAGA
TGTTCTTGGTATGTCCCTTGACATTCGAGTCTCAAGCAGTCAACTACGAC
ATGAAACAGCTTGCCTGATCTCCTTCAGTAGGCACACGAGCAAGTTTTGC
TCGGAGGTTTCTCTTTGGCAGACCCGCCTGCTCATCCTATCCCGATCCTC
TCCTACCCCCTGCTTTGTTTTTTTACCTCGACATCGCACAACGTTCTGCA
GGTTGGAGCGAGCTCGATTTTCAACCGAGAGAGTCCTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11157:534..5323-

>mRNA_L-elsbetiae_contig11157.1043.1 ID=mRNA_L-elsbetiae_contig11157.1043.1|Name=mRNA_L-elsbetiae_contig11157.1043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig11157:534..5323- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAGGACAGGGCGAGACCAAGGGAAGCCGAAGGGCAAGAGGGAGCC
GGCGACGCAGCGGGGCAACAGGGGAGCACTGGTTAACAAGCGCGGGAAGA
GCAGATGGCCAGGACAGGGCGAGACCAAGGGAAGCCGAAGGGCAAGAGGG
AGCCGGCGACGCAGCGGGGCAACAGGGGAGCACTGGTTAACAAGCGCGGG
AAGAGCAGTTCTCATCAGTTCAAGAGTGAGTGGTGCACCGACATGAATTG
CCCGAACGCCGGGGATGGCCAGCATGTCCACCTGTTGAACAGTCTTCGGA
TGGCCATGCGCCTGGCTGAGAAGTACGACATCGTGCTGCCCCGCCTGACC
TTCATTCAAGATTTCTCATCAGTTCAAGAGTGAGTGGTGCACCGACATGA
ATTGCCCGAACGCCGGGGATGGCCAGCATGTCCACCTGTTGAACAGTCTT
CGGATGGCCATGCGCCTGGCTGAGAAGTACGACATCGTGCTGCCCCGCCT
GACCTTCATTCAAGATGTTGGAGCGAGCTCGATTTTCAACCGAGAGAGTC
CTTAGGTTGGAGCGAGCTCGATTTTCAACCGAGAGAGTCCTTAG
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