mRNA_L-elsbetiae_contig11154.1040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.180e-45 Identity = 94/211 (44.55%), Postives = 129/211 (61.14%), Query Frame = 1 Query: 163 RHGIDCGGKFAPVCRISSQGRVRVSIREQLMNKFSMTNLGSASLVLGMEIEQGDGYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELE--SRHSCTGFLYMLGGGVISSASVLQK 789 R ++ G R V +++QL +KF MT+ G A L+LGMEI Q DG I V+Q YV +IL K+ + PA TP +G + P+ A YL + K YQ IVG+L++L NT RW+IG+AV+ L R M PT +H+V AK VLRYLRG PD+P + +G L Y D+ FAG E + S TG++++L GGV+S+AS LQK Sbjct: 379 RQNVNKGNIVLKFVRTGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQK 589
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.150e-38 Identity = 107/325 (32.92%), Postives = 140/325 (43.08%), Query Frame = 1 Query: 88 GSR*VFKVKPDVTFKARLVVQGYG*RHGIDCGGKFAPVCRISSQ-----------------------------------------------------------------------------------------------------------------GR---VRVSIREQLMNKFSMTNLGSASLVLGMEIEQGDGYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELE 714 GSR ++K+K KARL+VQG+G RHGIDCGG +APV R SSQ G+ V +++QL +KF MT+ G A L+LGMEI Q DG I V+Q YV +IL K+ + PA TP +G + P+ A YL + K YQ IVG+L++L NT RW+IG+AV+ L R M PT +H+V AK VLRYLRG PD+P + +G L Y D+ FAG E Sbjct: 938 GSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSE 1262
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE) HSP 1 Score: 152 bits (385), Expect = 8.860e-38 Identity = 94/236 (39.83%), Postives = 127/236 (53.81%), Query Frame = 1 Query: 238 IREQLMNKFSMTNLGSASLVLGMEIEQGDGYIKVTQGNYVNSILRK---------------------------FGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELESRHSC--TGFLYMLGGGVISSASVLQKAIYYIEHHGRRAR----CPTRRI 846 +++QL +KF MT+ G A L+LGMEI Q D I V+Q YV +IL K + + PA TP +G + P+ A YL + K YQ IV +L++L NT RW+IG+AV+ L R M PT +H+V AK VLRYLRG PD+P + +G L Y D+ FAG E C TG+ ++L GGVIS+AS LQK ++ R R CP R+ Sbjct: 121 LKKQLSDKFKMTDGGPAELLLGMEISQRDEEITVSQHKYVMNILDKAEXXXXXXXXXXXXXXXXXXXXXXXXXYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVLSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKCSSTGYTFILAGGVISAASTLQKXNQHMVGAKRVLRYLQGCPDMRL 356
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 141 bits (356), Expect = 1.740e-35 Identity = 72/180 (40.00%), Postives = 107/180 (59.44%), Query Frame = 1 Query: 253 MNKFSMTNLGSASLVLGMEIEQG--DGYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELESRHSCTGFLYMLGGGVISSASVLQ 786 M+ F MT++G V+G+E+++ G + ++QG Y IL+++G ++NP TP G LS L +++Q I G+L+YL R+D+ +AV LTR A P + H+ AAK +LRYLRGTPDLP VY KG +L + DS F ++ S TG+L+ LGGG+IS + Q Sbjct: 1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 180
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.580e-34 Identity = 74/186 (39.78%), Postives = 112/186 (60.22%), Query Frame = 1 Query: 235 SIREQLMNKFSMTNLGSASLVLGMEIEQG--DGYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELESRHSCTGFLYMLGGGVISSASVLQ 786 S +++LM+ F MT++G V+G+E+++ G + ++QG Y IL+++G ++NP TP G LS L +++Q I G+L+YL R+D+ +AV LTR A P + H+ AAK +LRYLRGTPDLP VY KG +L + DS F ++ S TG+L+ LGGG+IS + Q Sbjct: 1211 SKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 1396
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.750e-34 Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = 1 Query: 241 REQLMNKFSMTNLGSASLVLGMEIEQG--DGYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELESRHSCTGFLYMLGGGVISSASVLQ 786 +++LM+ F MT++G V+G+E+++ G + ++QG Y IL+++G ++NP TP G LS L +++Q I G+L+YL R+D+ +AV LTR A P + H+ AAK +LRYLRGTPDLP VY KG +L + DS F ++ S TG+L+ LGGG+IS + Q Sbjct: 434 KKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 617
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE) HSP 1 Score: 137 bits (345), Expect = 3.270e-34 Identity = 84/212 (39.62%), Postives = 122/212 (57.55%), Query Frame = 1 Query: 64 NYGHTTEHGSR*VFKVKPDVTFKARL-----VVQGYG*RHGIDCGGKFAPVCRISSQG-RVRVSIREQLMNKFSMTNLGSASLVLGMEIEQGDGYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHK-GPLKLV 678 N+G+ G++ ++ F A L V G G + I C + C ++ + V ++QL +KF+MT+ G A L+LGMEI Q DG I V+Q YV +IL K+ + PA TP +G + P+ A YL K YQ IVG+L++L +T RW+IG+AV+ L R M PT++H+V AK VLRYLRG PD+P + + GP L+ Sbjct: 65 NFGNAFAKGNK-------EIGFTALLSDPCVYVYGAGPTYAILC--VYVDNCTLAGRTPSVVQDWKKQLSDKFNMTDGGPAELLLGMEIYQRDGDITVSQHKYVTNILNKYQMVDCKPAATPGSGPEIEQEPENAIYLSDEDKKPYQGIVGSLLFLTHTTRWEIGYAVMVLCRGMNKPTDQHMVGAKRVLRYLRGCPDMPLKFRRMGPEVLL 267
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5JN29_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN29_9PHAE) HSP 1 Score: 140 bits (352), Expect = 8.120e-34 Identity = 72/184 (39.13%), Postives = 108/184 (58.70%), Query Frame = 1 Query: 241 REQLMNKFSMTNLGSASLVLGMEIEQG--DGYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELESRHSCTGFLYMLGGGVISSASVLQ 786 ++ LM+ F M ++G LV+G+E+++ G + ++QG Y IL+++G ++NP TP G LS L +++Q I G+L+YL R+D+ +AV LTR A P + H+ AAK VL YL GTPDLP VY KG +L + DS F ++ S TG+L+ LGGG+IS + Q Sbjct: 227 KKDLMDSFDMIDMGEVKLVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQTITGSLLYLAQCSRYDLSYAVHQLTRACANPAQVHMAAAKHVLWYLGGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 410
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE) HSP 1 Score: 136 bits (342), Expect = 6.310e-33 Identity = 71/186 (38.17%), Postives = 108/186 (58.06%), Query Frame = 1 Query: 235 SIREQLMNKFSMTNLGSASLVLGMEIEQGD--GYIKVTQGNYVNSILRKFGFHESNPAPTPATGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELESRHSCTGFLYMLGGGVISSASVLQ 786 S +++LM+ F MT++G V+G+ +++ G + ++QG Y I +++G ++NP TP G LS L +++Q I G+L+YL R+D +AV L R A P + H+ AAK +LRYLRGTPDLP VY KG +L + DS F ++ S TG+L+ LGGG+IS + Q Sbjct: 121 SKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSITGYLFFLGGGLISYGAKAQ 306
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Match: A0A7N2L3T4_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2L3T4_QUELO) HSP 1 Score: 138 bits (347), Expect = 9.440e-32 Identity = 89/258 (34.50%), Postives = 139/258 (53.88%), Query Frame = 1 Query: 127 FKARLVVQGYG*RHGIDCGGKFAPVCRISS----QGRVRV------------------------SIREQLMNKFSMTNLGSASLVLGMEI--EQGDGYIKVTQGNYVNSILRKFGFHESNPAPTPA-----TGKPLSGNPDGAGYLDKSGTKKYQEIVGTLMYLVNTMRWDIGHAVLGLTRKMAAPTEEHLVAAKSVLRYLRGTPDLPAVYHKGPLKLVGYADSDFAGELESRHSCTGFLYMLGGGVISSASVLQKAI 795 +KARLVV+G+ + GI+ F+PV ++S+ G V + ++++QL +F+M +LG+A +LGM I ++ +G +K++Q YV +L +F +E+ P TP K S + +D Y +G+LMY + R DI HAV ++R M+ P ++H A K +LRYL+G+ D + LKL GY D+DFAG+++SR S TGF++ LGG IS AS LQK + Sbjct: 705 YKARLVVKGFQQKEGIEYTEIFSPVVKMSTIRQVLGMVAIENLHLEQLDVKTAFLHGFSIEEINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSRKTEVE--MDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSSDTCLCFTGASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIV 960 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11154.1040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11154.1040.1 >prot_L-elsbetiae_contig11154.1040.1 ID=prot_L-elsbetiae_contig11154.1040.1|Name=mRNA_L-elsbetiae_contig11154.1040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp MNKFSMTNLGSASLVLGMEIEQGDGYIKVTQGNYVNSILRKFGFHESNPAback to top mRNA from alignment at L-elsbetiae_contig11154:4279..5483+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11154.1040.1 ID=mRNA_L-elsbetiae_contig11154.1040.1|Name=mRNA_L-elsbetiae_contig11154.1040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1205bp|location=Sequence derived from alignment at L-elsbetiae_contig11154:4279..5483+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11154:4279..5483+ >mRNA_L-elsbetiae_contig11154.1040.1 ID=mRNA_L-elsbetiae_contig11154.1040.1|Name=mRNA_L-elsbetiae_contig11154.1040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig11154:4279..5483+ (Laminarionema elsbetiae ELsaHSoW15)back to top |