mRNA_L-elsbetiae_contig11154.1038.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11154.1038.1
Unique NamemRNA_L-elsbetiae_contig11154.1038.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.370e-21
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPA 225
            +FG  A L HLRVVGARAFVH E + +KL  RAWEGRLVGYS DS++YRIYN+ TR+V E+RN  FIET   PP+
Sbjct:  790 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAPPS 864          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.420e-21
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPA 225
            +FG  A L HLRVVGARAFVH E + +KL  RAWEGRLVGYS DS++YRIYN+ TR+V E+RN  FIET   PP+
Sbjct: 1019 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAPPS 1093          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.240e-21
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPA 225
            +FG  A L HLRVVGARAFVH E + +KL  RAWEGRLVGYS DS++YRIYN+ TR+V E+RN  FIET   PP+
Sbjct:  696 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNPAPPS 770          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.310e-21
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPA 225
            ++G+ A L HLRV+G+RAFVH E +  KL+ RAWEGRLVGYS DS++YRIYNS TR+V  +RN  FIETP   PA
Sbjct:  260 LYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETPPVAPA 334          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.470e-20
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPA 225
            +FG  A L H RVVGARAFVH E + +KL  RAWEGRLVGYS DS++YRIYN+ TR+V E+RN  FIET  +PP+
Sbjct:   46 LFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPSPPS 120          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.550e-20
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETP 210
            M+G++A LS LRV+GAR+FV+YERY +KL DR +EG+L G+S+DS+ YRIYN  T  VVE+RN TFIETP
Sbjct: 1141 MYGKEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIETP 1210          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.890e-20
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPAAA 231
            ++G+ A L HLRV+G+RAFVH E +  KL+ RAWEGRLVGYS DS++YRIYNS TR+V  +R   FI+TP   PA A
Sbjct:  729 LYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIKTPPVAPALA 805          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.350e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPA 225
            ++G+ A L H RV+G+RAFVH E +  KL+  AWEGRLVGYS DS++YRIYNS TR+   +RNF FIETP   PA
Sbjct:  448 LYGKDAYLGHNRVIGSRAFVHEETHTRKLEHLAWEGRLVGYSTDSKSYRIYNSETRRARVSRNFVFIETPPVAPA 522          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.360e-19
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIE 204
            MFG+QA L HLRV+G+ AFVH E Y+ KL +RAW G L+GYS DSRAYR++N  T+++V +RN TFIE
Sbjct:  203 MFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIE 270          
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.330e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRIYNSTTRQVVENRNFTFIETPDTPPA 225
            ++G+ A L HLRV+G+RAFVH   +  KL+ RAWEGRLVGYS  S++YRIYNS TR+V  +RN  FIETP   PA
Sbjct:  811 LYGKDAYLGHLRVIGSRAFVHEATHTRKLEHRAWEGRLVGYSTVSKSYRIYNSETRRVRVSRNVVFIETPPIAPA 885          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11154.1038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE2.370e-2165.33Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE2.420e-2165.33Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE3.240e-2165.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE4.310e-2162.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMG0_9PHAE1.470e-2064.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS9_9PHAE1.550e-2064.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE9.890e-2059.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL30_9PHAE1.350e-1960.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE2.360e-1961.76Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JC75_9PHAE6.330e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11154contigL-elsbetiae_contig11154:3426..3797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.0
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815329.2392695-CDS-L-elsbetiae_contig11154:3425..37971622815329.2392695-CDS-L-elsbetiae_contig11154:3425..3797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11154 3426..3797 +
1691682842.1439164-CDS-L-elsbetiae_contig11154:3425..37971691682842.1439164-CDS-L-elsbetiae_contig11154:3425..3797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11154 3426..3797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11154.1038.1prot_L-elsbetiae_contig11154.1038.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11154 3426..3797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11154.1038.1

>prot_L-elsbetiae_contig11154.1038.1 ID=prot_L-elsbetiae_contig11154.1038.1|Name=mRNA_L-elsbetiae_contig11154.1038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MFGEQAVLSHLRVVGARAFVHYERYREKLQDRAWEGRLVGYSKDSRAYRI
YNSTTRQVVENRNFTFIETPDTPPAAAAVHRESSSPPDADSSGDLHFGDD
SDNNNSEDSGDDADIDRDADSDGD
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mRNA from alignment at L-elsbetiae_contig11154:3426..3797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11154.1038.1 ID=mRNA_L-elsbetiae_contig11154.1038.1|Name=mRNA_L-elsbetiae_contig11154.1038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig11154:3426..3797+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCGAGCAGGCCGTGCTTTCGCACCTTCGCGTGGTGGGCGCGCG CGCTTTCGTCCACTACGAGCGCTACCGTGAGAAACTGCAGGACCGCGCCT GGGAAGGGCGTCTGGTTGGCTACAGCAAGGACAGCAGGGCCTACCGCATC TACAACAGCACGACGCGCCAGGTGGTTGAGAATCGCAACTTCACCTTCAT CGAAACCCCGGACACTCCTCCCGCTGCCGCCGCCGTCCATCGTGAATCAT CTTCCCCTCCGGATGCTGATTCAAGTGGCGATCTACACTTCGGCGACGAC AGCGACAACAACAACAGCGAGGACAGCGGCGACGACGCCGACATCGACAG GGATGCCGACAGTGATGGGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11154:3426..3797+

>mRNA_L-elsbetiae_contig11154.1038.1 ID=mRNA_L-elsbetiae_contig11154.1038.1|Name=mRNA_L-elsbetiae_contig11154.1038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig11154:3426..3797+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCGAGCAGGCCGTGCTTTCGCACCTTCGCGTGGTGGGCGCGCG
CGCTTTCGTCCACTACGAGCGCTACCGTGAGAAACTGCAGGACCGCGCCT
GGGAAGGGCGTCTGGTTGGCTACAGCAAGGACAGCAGGGCCTACCGCATC
TACAACAGCACGACGCGCCAGGTGGTTGAGAATCGCAACTTCACCTTCAT
CGAAACCCCGGACACTCCTCCCGCTGCCGCCGCCGTCCATCGTGAATCAT
CTTCCCCTCCGGATGCTGATTCAAGTGGCGATCTACACTTCGGCGACGAC
AGCGACAACAACAACAGCGAGGACAGCGGCGACGACGCCGACATCGACAG
GGATGCCGACAGTGATGGGGATATGTTCGGCGAGCAGGCCGTGCTTTCGC
ACCTTCGCGTGGTGGGCGCGCGCGCTTTCGTCCACTACGAGCGCTACCGT
GAGAAACTGCAGGACCGCGCCTGGGAAGGGCGTCTGGTTGGCTACAGCAA
GGACAGCAGGGCCTACCGCATCTACAACAGCACGACGCGCCAGGTGGTTG
AGAATCGCAACTTCACCTTCATCGAAACCCCGGACACTCCTCCCGCTGCC
GCCGCCGTCCATCGTGAATCATCTTCCCCTCCGGATGCTGATTCAAGTGG
CGATCTACACTTCGGCGACGACAGCGACAACAACAACAGCGAGGACAGCG
GCGACGACGCCGACATCGACAGGGATGCCGACAGTGATGGGGAT
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