mRNA_L-elsbetiae_contig11151.1035.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11151.1035.1
Unique NamemRNA_L-elsbetiae_contig11151.1035.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11151.1035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11151contigL-elsbetiae_contig11151:3927..5079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size433
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.9681926-CDS-L-elsbetiae_contig11151:3926..40071622815328.9681926-CDS-L-elsbetiae_contig11151:3926..4007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11151 3927..4007 -
1691682842.0296085-CDS-L-elsbetiae_contig11151:3926..40071691682842.0296085-CDS-L-elsbetiae_contig11151:3926..4007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11151 3927..4007 -
1622815329.0487444-CDS-L-elsbetiae_contig11151:4728..50791622815329.0487444-CDS-L-elsbetiae_contig11151:4728..5079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11151 4729..5079 -
1691682842.0419579-CDS-L-elsbetiae_contig11151:4728..50791691682842.0419579-CDS-L-elsbetiae_contig11151:4728..5079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11151 4729..5079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11151.1035.1prot_L-elsbetiae_contig11151.1035.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11151 3927..5079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11151.1035.1

>prot_L-elsbetiae_contig11151.1035.1 ID=prot_L-elsbetiae_contig11151.1035.1|Name=mRNA_L-elsbetiae_contig11151.1035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MTTRRDRRPARGQRRNMQQRETDASALPFDSSVSNSRHQRPTCATAGHIG
AGGHSWQRQRAGGGGQEGRDQRGGSVDTARKRKRILTDAAKISAVGEESF
KSFLELVTSVQATEILKASPPSSFVGKLLAHLLRLLPRAAASLD
back to top

mRNA from alignment at L-elsbetiae_contig11151:3927..5079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11151.1035.1 ID=mRNA_L-elsbetiae_contig11151.1035.1|Name=mRNA_L-elsbetiae_contig11151.1035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1153bp|location=Sequence derived from alignment at L-elsbetiae_contig11151:3927..5079- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCACTCGGCGTGACCGGCGCCCAGCACGGGGACAGAGGAGAAATAT
GCAACAAAGAGAAACTGACGCAAGCGCGCTTCCTTTTGATAGCAGCGTCA
GCAACAGCCGTCATCAGCGACCCACTTGTGCAACGGCCGGACATATCGGG
GCCGGCGGTCACAGCTGGCAGCGCCAGAGAGCGGGAGGAGGAGGACAAGA
AGGGAGAGATCAACGTGGGGGAAGCGTGGATACAGCACGGAAGCGAAAGA
GAATACTGACCGACGCCGCGAAAATTTCGGCTGTTGGAGAAGAGTCTTTC
AAGAGCTTTCTCGAGCTAGTCACCAGTGTCCAGGCGACGGAGATCTTGAA
GGTCCCAAAAAGGAGATATCTGTTGTAATGTAGATGTAGCAGACTACCGG
TAGACTAATGTCGGCATCCCCAAGAACACCGCACGAAAGCCCGTATGATG
CAGGGGATACATCGTACAGCTGCAGATAACCTCGTTGGTACTCTTCTCAA
GTTGCATCGCTCTCTTGTGGGCTGGAGATACACATTCGTTCGTTTCTTCG
AGATGCATGTGGCGTCCCCTCGAAATCTGCCTCTCTCTCGGCCTCTTTGC
CCTCTTTTTCGTGCCTCACGTATCATACCACAAGGAGTCCCTCAAGACGA
GAATCTGCTCGGTAGATGGTGCGAATCGAAACACGAGATTCACCGTCCTT
TCGCTAGCCAGCCCTCAGGCACACAACAGTTCAGAGTTGCTTGGAGTCGA
ACTTTAGTTTTTAAACGAACGGGGCCTGATGAGCCCGTGGGCGTCGAGAA
GCAGCCCGCAAAACCGTCGGCATTCCATTCGGCCACCGCACGCGCGCGCG
GCTTCACCTTGTAACCGACGCATACAAAGCCCTCGCGCGGTTGACAAGAT
CATTCTACCGGCAGAGACGCCTGTGACCACGGGAATCGACCGCGTCAGTG
TGGAGGTGTACTGGATAGAGAGATCGGAACGTTTTTATTTCCAATGTGAA
GATGACACAGGCGCCTAAAACAAACGCCATGGGCACCGCACTACTGCTGC
TGTCCTCCAACACAACAAGCAGGCGTCCCCACCCTCCAGCTTCGTTGGAA
AGCTGCTGGCTCATCTCCTCCGCCTGCTGCCGCGGGCGGCCGCGTCGCTC
GAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11151:3927..5079-

>mRNA_L-elsbetiae_contig11151.1035.1 ID=mRNA_L-elsbetiae_contig11151.1035.1|Name=mRNA_L-elsbetiae_contig11151.1035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig11151:3927..5079- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCACTCGGCGTGACCGGCGCCCAGCACGGGGACAGAGGAGAAATAT
GCAACAAAGAGAAACTGACGCAAGCGCGCTTCCTTTTGATAGCAGCGTCA
GCAACAGCCGTCATCAGCGACCCACTTGTGCAACGGCCGGACATATCGGG
GCCGGCGGTCACAGCTGGCAGCGCCAGAGAGCGGGAGGAGGAGGACAAGA
AGGGAGAGATCAACGTGGGGGAAGCGTGGATACAGCACGGAAGCGAAAGA
GAATACTGACCGACGCCGCGAAAATTTCGGCTGTTGGAGAAGAGTCTTTC
AAGAGCTTTCTCGAGCTAGTCACCAGTGTCCAGGCGACGGAGATCTTGAA
GATGACCACTCGGCGTGACCGGCGCCCAGCACGGGGACAGAGGAGAAATA
TGCAACAAAGAGAAACTGACGCAAGCGCGCTTCCTTTTGATAGCAGCGTC
AGCAACAGCCGTCATCAGCGACCCACTTGTGCAACGGCCGGACATATCGG
GGCCGGCGGTCACAGCTGGCAGCGCCAGAGAGCGGGAGGAGGAGGACAAG
AAGGGAGAGATCAACGTGGGGGAAGCGTGGATACAGCACGGAAGCGAAAG
AGAATACTGACCGACGCCGCGAAAATTTCGGCTGTTGGAGAAGAGTCTTT
CAAGAGCTTTCTCGAGCTAGTCACCAGTGTCCAGGCGACGGAGATCTTGA
AGGCGTCCCCACCCTCCAGCTTCGTTGGAAAGCTGCTGGCTCATCTCCTC
CGCCTGCTGCCGCGGGCGGCCGCGTCGCTCGACGCGTCCCCACCCTCCAG
CTTCGTTGGAAAGCTGCTGGCTCATCTCCTCCGCCTGCTGCCGCGGGCGG
CCGCGTCGCTCGAC
back to top