mRNA_L-elsbetiae_contig1115.1033.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1115.1033.1
Unique NamemRNA_L-elsbetiae_contig1115.1033.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1115.1033.1 vs. uniprot
Match: D8LQ12_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ12_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 2.490e-91
Identity = 271/451 (60.09%), Postives = 299/451 (66.30%), Query Frame = 1 
Query:  175 ARDKMKSAAGMLAIDDEELVAAAFGRLKKQTPAIVTEVTGELTPSGSACEGEEAGVDSH-DLTRTLSALQRLSLIDQTTLRSKL------------------------------------QGKQGRGSITQEVHESSXXXXXXXESEDVVVDSPIQVVLNKAVVESDLVGLTAALRSGGQPNDRDSKGHSPLHFAAAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTQAGEKETFRRIAGLLGPSALLARDELQQTPLHVAASCGNRAAVAVLLDLDADPEAQDRKGRVAGQSFLRQVTRRARADIRASLAAAIEKRDAXXXXXXXXXXXXXXXXXXGTRRDCGDGEQFDDEVGAAGPARPPLKMGGMKRATSTASCESAEPVRRPSVMSLLQLGGWGG-----GGDAGGGETSF 1401
            AR +M S  GMLAI+D    A      K     I TE+TGE+TPSGSACEGEE   DS  +LTRTLSALQRLS+ DQTTLR KL                                    +G+QG  ++                   V  DSP +VVL KAVVESDL    AALRSG  PN+RD   HS LHFAAAK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASTQA EK+TFR++A LLGPSALLARDELQQTPLHVAASCGNR AV+VLL+L+ADPEA DRKGRVAGQSFLRQVTRRARADIRASLAAA+E+  A                           +  DD++ A G   PP+  GGMKRATSTASCESAEPVR+PS++SLLQ+GGWG          GGGETSF
Sbjct:    8 ARQRMISGYGMLAIEDPAPAAT-----KAAGEPIATELTGEITPSGSACEGEE---DSEGELTRTLSALQRLSVEDQTTLRRKLGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSKEGKGEQGMAALG------------------VPADSPFRVVLQKAVVESDLDAARAALRSGADPNERDDLCHSSLHFAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASTQACEKDTFRQMAELLGPSALLARDELQQTPLHVAASCGNRGAVSVLLELNADPEATDRKGRVAGQSFLRQVTRRARADIRASLAAAVERIHAPPA------------------------DAEDDDLDADGGGLPPMP-GGMKRATSTASCESAEPVRKPSMLSLLQIGGWGXXXXXDASGRGGGETSF 407
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1115.1033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ12_ECTSI2.490e-9160.09Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ12... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1115contigL-elsbetiae_contig1115:18706..22143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.9
Seed ortholog evalue3.8e-78
Seed eggNOG ortholog2880.D8LQ12
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-15_001350.1
Exons3
Model size1425
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1115.1033.1prot_L-elsbetiae_contig1115.1033.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1115 18706..21996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.8378966-CDS-L-elsbetiae_contig1115:18705..192031622815328.8378966-CDS-L-elsbetiae_contig1115:18705..19203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1115 18706..19203 -
1691682841.9576976-CDS-L-elsbetiae_contig1115:18705..192031691682841.9576976-CDS-L-elsbetiae_contig1115:18705..19203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1115 18706..19203 -
1622815328.8532465-CDS-L-elsbetiae_contig1115:20489..206961622815328.8532465-CDS-L-elsbetiae_contig1115:20489..20696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1115 20490..20696 -
1691682841.9680443-CDS-L-elsbetiae_contig1115:20489..206961691682841.9680443-CDS-L-elsbetiae_contig1115:20489..20696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1115 20490..20696 -
1622815328.8626897-CDS-L-elsbetiae_contig1115:21423..219961622815328.8626897-CDS-L-elsbetiae_contig1115:21423..21996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1115 21424..21996 -
1691682841.9768357-CDS-L-elsbetiae_contig1115:21423..219961691682841.9768357-CDS-L-elsbetiae_contig1115:21423..21996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1115 21424..21996 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.8729515-UTR-L-elsbetiae_contig1115:21996..221431622815328.8729515-UTR-L-elsbetiae_contig1115:21996..22143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1115 21997..22143 -
1691682841.9863207-UTR-L-elsbetiae_contig1115:21996..221431691682841.9863207-UTR-L-elsbetiae_contig1115:21996..22143Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1115 21997..22143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1115.1033.1

>prot_L-elsbetiae_contig1115.1033.1 ID=prot_L-elsbetiae_contig1115.1033.1|Name=mRNA_L-elsbetiae_contig1115.1033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=426bp
MSATSVFQSARDKMKSAAGMLAIDDEELVAAAFGRLKKQTPAIVTEVTGE
LTPSGSACEGEEAGVDSHDLTRTLSALQRLSLIDQTTLRSKLQGKQGRGS
ITQEVHESSSSSSSSTESEDVVVDSPIQVVLNKAVVESDLVGLTAALRSG
GQPNDRDSKGHSPLHFAAAKGDIGCLRHLMQSGSRANVANNVGWSPLHYA
TLGGHVAAVEALLRAGAYPCFRDNHMISPLHLASTQAGEKETFRRIAGLL
GPSALLARDELQQTPLHVAASCGNRAAVAVLLDLDADPEAQDRKGRVAGQ
SFLRQVTRRARADIRASLAAAIEKRDAAAAAAAAAAAAAAAAAAAGTRRD
CGDGEQFDDEVGAAGPARPPLKMGGMKRATSTASCESAEPVRRPSVMSLL
QLGGWGGGGDAGGGETSFGPVYSSS*
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mRNA from alignment at L-elsbetiae_contig1115:18706..22143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1115.1033.1 ID=mRNA_L-elsbetiae_contig1115.1033.1|Name=mRNA_L-elsbetiae_contig1115.1033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3438bp|location=Sequence derived from alignment at L-elsbetiae_contig1115:18706..22143- (Laminarionema elsbetiae ELsaHSoW15)
CGTCCGTGTGCAACTGCGTACTCGCTTCTTGGTTCCGATATTCCGGCCCA
CAAACCACACCACCTCACGACCGAACGTAATCGAGCACTGGCGGAGCAGT
CCTTCATTTTTTTCGCAGGCTTTCCGTGACTCTGCTGCGTTGCGTCGATG
TCTGCAACAAGCGTCTTCCAAAGCGCCCGTGACAAGATGAAGTCGGCCGC
GGGCATGCTGGCCATAGACGACGAGGAGCTAGTAGCAGCAGCGTTCGGCA
GGCTCAAGAAACAGACTCCCGCGATCGTGACGGAGGTCACCGGCGAGCTG
ACCCCGAGCGGGTCGGCGTGCGAAGGGGAGGAGGCGGGCGTGGACTCGCA
CGACCTCACGCGGACGCTCAGCGCTCTCCAACGCCTGAGCCTCATCGACC
AAACCACACTCCGGAGCAAGCTGCAGGGGAAGCAGGGGAGGGGCAGCATC
ACCCAGGAGGTGCATGAGAGCAGCAGCAGCAGCAGCAGCAGCACGGAGAG
CGAGGACGTCGTCGTGGACTCCCCGATCCAGGTTGTGCTCAACAAGGCGG
TGGTGGAGAGCGATCTGGTGGGACTCACGGCTGCGTTGCGGTCAGGCGGA
CAGCCCAACGACCGCGACAGCAAGGGACACAGCCCGCTCCACTTTGCCGC
TGCAAAAGGGGACATCGGCTGCCTACGTCACCTCATGCAGTCGGGGTCTA
GAGCAAACGTCGCCAACAACGTGAGTCCTTGCTTTGCACGCAACAAGCGC
GCGCGCGCGCAACAGAGAGAGAGAGATAAGAGAGAGCTGGTTTTGAAAAA
AAAACCGGGCGCGCGCGGAGACAAGCCCGCGCGGGTGGACAGGCAGTTTT
TGGCATGTACGTATTTAGGCGGTTGGCTTTGGCACCAGGCGTCGTGTGTT
GTGCGGACACCACCCCGCGCAAATGAAGAATATAGAGAGGGTAGCCATCT
CAGTTCCTGCTGTTCGCTCTGGAGACGCGAGAGGAGGCGCGTGCCCGCTT
CCTTCCTTCTACAATATCTCTGTAATCGCCCCTTTCTCTCTCTCATCGCA
AAAGTCAGTGCTTCTTCCTGCTCTGGTCTTGTGTCCGAGCAGTTGCAGCG
AAAAAAACGCAGCTTGTCGGGCTACTGCCAGTAGCATGCATTCCCTTTTC
GGAAGGCGGGCAGTCGTAGATATACATATACATGCGGTTTTTGTCTCTGT
CTAGATGCGTCTGTTGGTGCACAATCCCGCGAAACAAACACTCATGATGC
GATGATGGTGGCTCTAGCCGAATTTCCACTCCCGCGCGCGCGCGGGCGGT
GGCCAAATTTCGTTTCTTGCCGACGGAGTTCTGAAGAATTACTTGCCCCG
TTTGTCTCTCCTCCCCCCCATCCTTTTTTTTTGTGGCCGTTGTGTGTCAT
CACGGCGCTCGCGCGTTCTTTTTCTACTGTTGTTGGTCTTGGCTCAGGTC
GGCTGGTCGCCCTTGCACTACGCGACGCTAGGCGGGCACGTGGCGGCGGT
GGAGGCCCTCCTGAGAGCGGGCGCCTACCCCTGCTTCCGAGACAACCACA
TGATCTCCCCCCTCCACCTCGCCTCAACCCAGGCCGGCGAGAAGGAGACC
TTCCGGCGAATCGCGGGGCTGCTGGGACCCTCCGCCCTGCTCGCGCGCGA
CGAGGTAAGCCGCCGCTCCTCTTCTCTCACCTATGCTTACAAGTGCGTCA
TCACCCGCTTCGCAGCGGTGCAGCGGTGAAGCGGTGCACACGTTTTGGCT
ACGTTCCTCGCTCCTGCTTTTTTTTTTTTTTTTTAAAAGAGCCGAATAAA
GGCCGAGTGACGTTTTGACGTTTTCTCTCATTTGCCTGTGTGTTGGTGTT
GAAGTTTCGGTCGTGTGTGTGCGTGTGTGCCGTTTTGCGTTGGTTGTGGC
CAGACATGGACTTTCTGTCCTGAAGATGCCACGCAAGGCTACTGCCTTTT
CTGCTTGCGTGCGGGGTGTTCGAGATGTGTTTGCCGTTGCGTATTGGGTT
GCCGTTGCGTATTGGGTTACCTCATTTTTTTCTCTTACATATATATAGGT
ATAGTCTATACTATACTCGGGTCGATGGCGTTGGATGACCTCATGATGAT
CATTCGGAGACGCACGTATCAGACTCTTTTTGTGAGAAGAGGCGGAAATG
AACGTGTGTGGGCGACACGATCCCCATGTCAGAGGGAATAATCAGGGCCG
CAGTGCCGCAGTTCCACACAGCAGTGACATATGTATATATATACACGCCG
CATGTTTCGTTGCATCTTTTTCTGCGTGACTGCGGCGGTTGTAGTACCCT
TTCGTCCCCTCTCTGGGAGATACTCCGTAGATGTACTCCATGGGCATGCA
TGCATCTGCGATAAAATGCGTGGCGGCGGTGTGTGCGTGAACCCTTCCGT
TCAACACCAGAGATGTTTATATAAATAGATAGCTTGGTACAAGCACAGAT
CGGAACGGTTTTTAATGTGAAGAAACAACACATACGAAACCTTTCACATC
TATCTATATCTATCCACCTCTCTCCCCTTTCCCCTGCTCCAGACACCGGC
ACACACTTGTACACTTGCGTATGTATACATTTTTTGTTTTTTATTCATTC
ACAATTTAAGGGCGCTCGATGGGCTGTGTGTCACGCGGGTACCTTGCCAG
AGTACTGAAACGTGGTCACGTAGAAGGGTTCCTTTTTTCCTGAGGCCGAC
CCCCACCACCCCCGTCTGCCGGTGCTCCCTCCCCAGGAGAGAAAATACGA
ACTATACAAGTGCCCATGATAAAAACAGACCACACCACCGCTACTCTGTG
TGTACCCTCCCAAAGGCATACATACAATACGACTGGAGTTAAAAAAGACA
ACAATAAATAAAAATAATAGAAAAATAACATCCCCGGTGTCTCGCCCCCA
CCCGGACCTCCCTGCCCCCTTTCTCGTCCACCGCAAACAGCTGCAACAAA
CGCCTCTTCACGTGGCGGCCTCTTGCGGGAACCGCGCCGCCGTCGCCGTC
CTCCTCGATCTCGACGCGGACCCGGAAGCCCAGGACCGCAAGGGCCGGGT
CGCCGGCCAGTCTTTCCTCCGCCAGGTCACCCGCCGCGCGCGCGCCGACA
TCCGCGCGTCCTTGGCGGCCGCCATCGAGAAGCGAGACGCTGCTGCTGCT
GCGGCCGCTGCCGCGGCTGCTGCAGCAGCCGCGGCGGCGGCCGCTGGCAC
GCGGCGGGACTGTGGCGACGGCGAGCAGTTCGACGATGAGGTGGGGGCCG
CCGGCCCCGCGCGGCCGCCGCTAAAGATGGGGGGAATGAAGCGAGCCACG
TCCACGGCGAGCTGTGAGTCCGCCGAGCCTGTTCGAAGGCCGTCGGTGAT
GAGCCTGCTGCAGCTGGGTGGCTGGGGCGGCGGCGGCGATGCCGGCGGCG
GTGAAACTTCTTTCGGGCCGGTGTACTCGTCGAGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1115:18706..22143-

>mRNA_L-elsbetiae_contig1115.1033.1 ID=mRNA_L-elsbetiae_contig1115.1033.1|Name=mRNA_L-elsbetiae_contig1115.1033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2556bp|location=Sequence derived from alignment at L-elsbetiae_contig1115:18706..22143- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGCAACAAGCGTCTTCCAAAGCGCCCGTGACAAGATGAAGTCGGC
CGCGGGCATGCTGGCCATAGACGACGAGGAGCTAGTAGCAGCAGCGTTCG
GCAGGCTCAAGAAACAGACTCCCGCGATCGTGACGGAGGTCACCGGCGAG
CTGACCCCGAGCGGGTCGGCGTGCGAAGGGGAGGAGGCGGGCGTGGACTC
GCACGACCTCACGCGGACGCTCAGCGCTCTCCAACGCCTGAGCCTCATCG
ACCAAACCACACTCCGGAGCAAGCTGCAGGGGAAGCAGGGGAGGGGCAGC
ATCACCCAGGAGGTGCATGAGAGCAGCAGCAGCAGCAGCAGCAGCACGGA
GAGCGAGGACGTCGTCGTGGACTCCCCGATCCAGGTTGTGCTCAACAAGG
CGGTGGTGGAGAGCGATCTGGTGGGACTCACGGCTGCGTTGCGGTCAGGC
GGACAGCCCAACGACCGCGACAGCAAGGGACACAGCCCGCTCCACTTTGC
CGCTGCAAAAGGGGACATCGGCTGCCTACGTCACCTCATGCAGTCGGGGT
CTAGAGCAAACGTCGCCAACAACATGTCTGCAACAAGCGTCTTCCAAAGC
GCCCGTGACAAGATGAAGTCGGCCGCGGGCATGCTGGCCATAGACGACGA
GGAGCTAGTAGCAGCAGCGTTCGGCAGGCTCAAGAAACAGACTCCCGCGA
TCGTGACGGAGGTCACCGGCGAGCTGACCCCGAGCGGGTCGGCGTGCGAA
GGGGAGGAGGCGGGCGTGGACTCGCACGACCTCACGCGGACGCTCAGCGC
TCTCCAACGCCTGAGCCTCATCGACCAAACCACACTCCGGAGCAAGCTGC
AGGGGAAGCAGGGGAGGGGCAGCATCACCCAGGAGGTGCATGAGAGCAGC
AGCAGCAGCAGCAGCAGCACGGAGAGCGAGGACGTCGTCGTGGACTCCCC
GATCCAGGTTGTGCTCAACAAGGCGGTGGTGGAGAGCGATCTGGTGGGAC
TCACGGCTGCGTTGCGGTCAGGCGGACAGCCCAACGACCGCGACAGCAAG
GGACACAGCCCGCTCCACTTTGCCGCTGCAAAAGGGGACATCGGCTGCCT
ACGTCACCTCATGCAGTCGGGGTCTAGAGCAAACGTCGCCAACAACGTCG
GCTGGTCGCCCTTGCACTACGCGACGCTAGGCGGGCACGTGGCGGCGGTG
GAGGCCCTCCTGAGAGCGGGCGCCTACCCCTGCTTCCGAGACAACCACAT
GATCTCCCCCCTCCACCTCGCCTCAACCCAGGCCGGCGAGAAGGAGACCT
TCCGGCGAATCGCGGGGCTGCTGGGACCCTCCGCCCTGCTCGCGCGCGAC
GAGGTCGGCTGGTCGCCCTTGCACTACGCGACGCTAGGCGGGCACGTGGC
GGCGGTGGAGGCCCTCCTGAGAGCGGGCGCCTACCCCTGCTTCCGAGACA
ACCACATGATCTCCCCCCTCCACCTCGCCTCAACCCAGGCCGGCGAGAAG
GAGACCTTCCGGCGAATCGCGGGGCTGCTGGGACCCTCCGCCCTGCTCGC
GCGCGACGAGCTGCAACAAACGCCTCTTCACGTGGCGGCCTCTTGCGGGA
ACCGCGCCGCCGTCGCCGTCCTCCTCGATCTCGACGCGGACCCGGAAGCC
CAGGACCGCAAGGGCCGGGTCGCCGGCCAGTCTTTCCTCCGCCAGGTCAC
CCGCCGCGCGCGCGCCGACATCCGCGCGTCCTTGGCGGCCGCCATCGAGA
AGCGAGACGCTGCTGCTGCTGCGGCCGCTGCCGCGGCTGCTGCAGCAGCC
GCGGCGGCGGCCGCTGGCACGCGGCGGGACTGTGGCGACGGCGAGCAGTT
CGACGATGAGGTGGGGGCCGCCGGCCCCGCGCGGCCGCCGCTAAAGATGG
GGGGAATGAAGCGAGCCACGTCCACGGCGAGCTGTGAGTCCGCCGAGCCT
GTTCGAAGGCCGTCGGTGATGAGCCTGCTGCAGCTGGGTGGCTGGGGCGG
CGGCGGCGATGCCGGCGGCGGTGAAACTTCTTTCGGGCCGGTGTACTCGT
CGAGCTAGCTGCAACAAACGCCTCTTCACGTGGCGGCCTCTTGCGGGAAC
CGCGCCGCCGTCGCCGTCCTCCTCGATCTCGACGCGGACCCGGAAGCCCA
GGACCGCAAGGGCCGGGTCGCCGGCCAGTCTTTCCTCCGCCAGGTCACCC
GCCGCGCGCGCGCCGACATCCGCGCGTCCTTGGCGGCCGCCATCGAGAAG
CGAGACGCTGCTGCTGCTGCGGCCGCTGCCGCGGCTGCTGCAGCAGCCGC
GGCGGCGGCCGCTGGCACGCGGCGGGACTGTGGCGACGGCGAGCAGTTCG
ACGATGAGGTGGGGGCCGCCGGCCCCGCGCGGCCGCCGCTAAAGATGGGG
GGAATGAAGCGAGCCACGTCCACGGCGAGCTGTGAGTCCGCCGAGCCTGT
TCGAAGGCCGTCGGTGATGAGCCTGCTGCAGCTGGGTGGCTGGGGCGGCG
GCGGCGATGCCGGCGGCGGTGAAACTTCTTTCGGGCCGGTGTACTCGTCG
AGCTAG
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