mRNA_L-elsbetiae_contig11144.1030.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11144.1030.1
Unique NamemRNA_L-elsbetiae_contig11144.1030.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11144.1030.1 vs. uniprot
Match: D7FJS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS0_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.590e-29
Identity = 73/111 (65.77%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:  229 TNTPDWLQQAAVAK-AKPTKHLLATTACPVCQQRSNGGPKVATTSTLSWMSSMKRRSSMDLEDGDVQAAIAQAKAKTVPGGWLQIGALGAPDAVEAETELEEARAASSLAR 558
            +N PDWLQQA  A  AKP     A  +     QR  GG K AT S LSWM+SMKRRSSMDL D  V+ AIAQAKAKT+PGGWLQ+GALGAPDAVE    LEEARAASSL R
Sbjct: 1713 SNGPDWLQQATAAPTAKP-----ANRSRGAATQRPGGGRKAATQSPLSWMTSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQMGALGAPDAVEEANALEEARAASSLTR 1818
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BLAST of mRNA_L-elsbetiae_contig11144.1030.1 vs. uniprot
Match: A0A6H5KKG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.690e-28
Identity = 71/108 (65.74%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:  238 PDWLQQAAVAKA-KPTKHLLATTACPVCQQRSNGGPKVATTSTLSWMSSMKRRSSMDLEDGDVQAAIAQAKAKTVPGGWLQIGALGAPDAVEAETELEEARAASSLAR 558
            PDWLQQA  A   KP              QR  GG K A  S LSWMSSMKRRSSMDL D  V+ AIAQAKAKT+PGGWLQIGALGAPDAVE    LEEARAASSL R
Sbjct:  743 PDWLQQATAASTGKPANRWRGA-----ATQRPGGGRKAAAQSPLSWMSSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQIGALGAPDAVEEANALEEARAASSLTR 845
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BLAST of mRNA_L-elsbetiae_contig11144.1030.1 vs. uniprot
Match: A0A6H5KVL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.870e-28
Identity = 74/145 (51.03%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:  130 GLVPTRFGEM*DPMTHHP-RPPCSPSTGVPDAEDTNTPDWLQQAAVAKAKPTKHLLATTACPVCQQRSNGGPKVAT-TSTLSWMSSMKRRSSMDLEDGDVQAAIAQAKAKTVPGGWLQIGALGAPDAVEAETELEEARAASSLAR 558
            G VP   G   + ++H   + P + ++ +P+  DTN PDWLQQAA   AKP     A+    + QQRS    K A   S LSWM  +KRRSSMDL+D  V+  +AQAKAK  PGGWLQIGALGAPDA+  E ELE+ARAAS   R
Sbjct:  943 GGVPASGGGSKNWLSHAAEQEPGAGASDMPNTGDTNAPDWLQQAAAPSAKPKDRQAAS----IPQQRSGIARKAAVPASPLSWMKQVKRRSSMDLDDPTVETTVAQAKAKAAPGGWLQIGALGAPDALAEENELEQARAASPRTR 1083
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11144.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJS0_ECTSI3.590e-2965.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKG6_9PHAE3.690e-2865.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVL2_9PHAE3.870e-2851.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11144contigL-elsbetiae_contig11144:991..1617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11144.1030.1prot_L-elsbetiae_contig11144.1030.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11144 1159..1551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.5630093-UTR-L-elsbetiae_contig11144:990..11581622815328.5630093-UTR-L-elsbetiae_contig11144:990..1158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11144 991..1158 +
1691682841.7975652-UTR-L-elsbetiae_contig11144:990..11581691682841.7975652-UTR-L-elsbetiae_contig11144:990..1158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11144 991..1158 +
1622815328.6103327-UTR-L-elsbetiae_contig11144:1551..16171622815328.6103327-UTR-L-elsbetiae_contig11144:1551..1617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11144 1552..1617 +
1691682841.8156736-UTR-L-elsbetiae_contig11144:1551..16171691682841.8156736-UTR-L-elsbetiae_contig11144:1551..1617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11144 1552..1617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.6007156-CDS-L-elsbetiae_contig11144:1158..15511622815328.6007156-CDS-L-elsbetiae_contig11144:1158..1551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11144 1159..1551 +
1691682841.8061152-CDS-L-elsbetiae_contig11144:1158..15511691682841.8061152-CDS-L-elsbetiae_contig11144:1158..1551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11144 1159..1551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11144.1030.1

>prot_L-elsbetiae_contig11144.1030.1 ID=prot_L-elsbetiae_contig11144.1030.1|Name=mRNA_L-elsbetiae_contig11144.1030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MTHHPRPPCSPSTGVPDAEDTNTPDWLQQAAVAKAKPTKHLLATTACPVC
QQRSNGGPKVATTSTLSWMSSMKRRSSMDLEDGDVQAAIAQAKAKTVPGG
WLQIGALGAPDAVEAETELEEARAASSLAR*
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mRNA from alignment at L-elsbetiae_contig11144:991..1617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11144.1030.1 ID=mRNA_L-elsbetiae_contig11144.1030.1|Name=mRNA_L-elsbetiae_contig11144.1030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=627bp|location=Sequence derived from alignment at L-elsbetiae_contig11144:991..1617+ (Laminarionema elsbetiae ELsaHSoW15)
GTGACTTCAGAGCGTATGGTGCTTTTCTCCACGTTGCACTTGGTACGAAT
TCACCAAGTACCTGCCGCAATTTGGGTGAAAGAGAGTTGGAAAACTATTG
CGCTCCCCGCTCACACTTCCATTCGTGATGGCCTGGTCCCGACGCGCTTT
GGTGAAATGTAAGACCCGATGACCCACCACCCCCGCCCCCCGTGCTCCCC
GTCAACAGGTGTACCTGACGCTGAAGACACCAATACTCCAGACTGGCTTC
AACAAGCCGCCGTCGCCAAGGCAAAGCCTACCAAGCACCTGTTAGCTACA
ACAGCATGTCCAGTATGTCAGCAGCGGTCCAACGGCGGGCCGAAGGTCGC
CACAACGTCGACCCTCTCGTGGATGAGCAGCATGAAGCGCCGCTCGTCCA
TGGACCTCGAAGACGGCGATGTTCAGGCGGCCATCGCTCAGGCTAAGGCC
AAGACTGTGCCCGGAGGCTGGCTGCAGATAGGAGCGCTGGGAGCCCCCGA
CGCCGTAGAAGCAGAGACCGAGCTCGAGGAAGCCCGGGCCGCTTCGTCCC
TAGCCAGGTGAACGGGGCGGCCCGGGCGTTGGGGGGGAGGGGGTACCGAT
ACTGTCTGTTGTGCGGAAGGAGGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11144:991..1617+

>mRNA_L-elsbetiae_contig11144.1030.1 ID=mRNA_L-elsbetiae_contig11144.1030.1|Name=mRNA_L-elsbetiae_contig11144.1030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig11144:991..1617+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCACCACCCCCGCCCCCCGTGCTCCCCGTCAACAGGTGTACCTGA
CGCTGAAGACACCAATACTCCAGACTGGCTTCAACAAGCCGCCGTCGCCA
AGGCAAAGCCTACCAAGCACCTGTTAGCTACAACAGCATGTCCAGTATGT
CAGCAGCGGTCCAACGGCGGGCCGAAGGTCGCCACAACGTCGACCCTCTC
GTGGATGAGCAGCATGAAGCGCCGCTCGTCCATGGACCTCGAAGACGGCG
ATGTTCAGGCGGCCATCGCTCAGGCTAAGGCCAAGACTGTGCCCGGAGGC
TGGCTGCAGATAGGAGCGCTGGGAGCCCCCGACGCCGTAGAAGCAGAGAC
CGAGCTCGAGGAAGCCCGGGCCGCTTCGTCCCTAGCCAGGTGAATGACCC
ACCACCCCCGCCCCCCGTGCTCCCCGTCAACAGGTGTACCTGACGCTGAA
GACACCAATACTCCAGACTGGCTTCAACAAGCCGCCGTCGCCAAGGCAAA
GCCTACCAAGCACCTGTTAGCTACAACAGCATGTCCAGTATGTCAGCAGC
GGTCCAACGGCGGGCCGAAGGTCGCCACAACGTCGACCCTCTCGTGGATG
AGCAGCATGAAGCGCCGCTCGTCCATGGACCTCGAAGACGGCGATGTTCA
GGCGGCCATCGCTCAGGCTAAGGCCAAGACTGTGCCCGGAGGCTGGCTGC
AGATAGGAGCGCTGGGAGCCCCCGACGCCGTAGAAGCAGAGACCGAGCTC
GAGGAAGCCCGGGCCGCTTCGTCCCTAGCCAGGTGA
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