mRNA_L-elsbetiae_contig11141.1028.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11141.1028.1
Unique NamemRNA_L-elsbetiae_contig11141.1028.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11141.1028.1 vs. uniprot
Match: A0A6H5KWS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS8_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 7.740e-74
Identity = 158/291 (54.30%), Postives = 198/291 (68.04%), Query Frame = 3 
Query:   36 LGPEPEEGTAEHRQWLAQKAMANNEAAESDTDVP---DGVSKYPKRPSNWMHTLTLTFCFFGRPAGKNEDHELAMCKEGSGPPNRGTKKNKKRESRTGSEGGXXXXXXXXEGSSM--ENPLNPGAVRQFVGAGESQSRAKVKKETAALVQKDSRDAVRREILEQGKVQMELSQKVAAAVEQVAANTTAQRVLEEEEACRKRKKQVMDDLEGDLRYCKPGGASSIKAKIRATHKIRVNEFTAAFVAGDMGTPPGPSAPVITSVVASLPGFSNDNTGTPGAAGGGATSEGAHG 893
            LGPEPEEG+ ++ +WLA++   N + A SD  V    DG   Y  RP+NW H LTLTFCFFGRPAG++ED EL  C   SGPP+RG K+             XXXXXXXX       ENPL+ GAVRQFVGAGE+QSRAKVKK T  +  + SRDA R + L Q   Q+E+++++  AV++VA NTTAQR L+EEEACRKRKKQ ++DLEGDL+YC+   A +IK KIRA  K+ V +FTA FV+G +    GPSAP +TS V +LPGFS  N+ TPG  GGGAT++   G
Sbjct:  160 LGPEPEEGSPDYPRWLARQGAINAKQAASDDAVSSSGDGNLGYGPRPANWTHPLTLTFCFFGRPAGEHEDTELNTCAASSGPPSRGKKRXXXXXXXXXXXXXXXXXXXXXXXXXXLTENPLHAGAVRQFVGAGEAQSRAKVKKATQEVELRQSRDAARAQFLRQNTEQLEVAKEMRDAVKRVADNTTAQRALQEEEACRKRKKQAIEDLEGDLQYCESHEAKAIKLKIRAMRKMPVGQFTADFVSGGIDDLAGPSAPEVTSDVPALPGFSL-NSETPGPEGGGATAQHPQG 449
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BLAST of mRNA_L-elsbetiae_contig11141.1028.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.330e-16
Identity = 68/195 (34.87%), Postives = 101/195 (51.79%), Query Frame = 3 
Query:   96 MANNEAAESDTDVPDGVSKYPKRPSNWMHTLTLTFCFFGRPAGKNEDHELAMCKEGSGPPNRGTKKNKKRESRTGSEGGXXXXXXXXEGSSMENPLNPGAVRQFVGAGESQSRAKVKKETAALVQKDSRDAVRREILEQGKVQMELSQKVAAAVEQVAANTTAQRVLEEEEACRKR-------KKQVMDDLEGDL 659
              + + A SD ++ +    YP RP  WMH   LT+C  GRP+  +ED +L   ++ SGP  RG K+  KR    GS G          G+  +  L+  A+R F GAGES+SRA+VKKE  A+   ++++  RR       VQ   + K+  AVE  +A   +++ L+EE A R         KK  +DDL G++
Sbjct:  117 QGSGDGAPSD-NIEEADGGYPDRPDKWMHPYLLTYCLIGRPSS-SEDPDLRTTRKTSGPKGRGGKQKSKR----GSPGTSDESGSETSGAYTDVDLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARR-------VQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLRGEV 298
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BLAST of mRNA_L-elsbetiae_contig11141.1028.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.110e-11
Identity = 58/148 (39.19%), Postives = 76/148 (51.35%), Query Frame = 3 
Query:    6 GAPEAASGGGLGPEPEEGTAEHRQWLAQKAMANNEAAESDTDVPDGVSKYPKRPSNWMHTLTLTFCFFGRPAGKNEDHELAMCKEGSGPPNRGTKKNKKRESRTGSEGGXXXXXXXXEGSSMENPLNPG--AVRQFVGAGESQSRAKV 443
            GA  AA   G+    + G     Q + Q+        +     P+ V +YP+RP NWM    LTFCFFGRP+  +ED +LAM K GSGP      + KK+ S   S  G        EG + +   N G   V+QFVGAGE+QSRA+V
Sbjct:  268 GAGRAAGSEGIDGSGDGGAGREGQPMEQEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSN-SEDTDLAM-KAGSGPSGDSRPRKKKKASLGSSSDGGSGS----EGGASDPAANLGRAGVKQFVGAGEAQSRAQV 409
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11141.1028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KWS8_9PHAE7.740e-7454.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK1_ECTSI3.330e-1634.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM89_9PHAE4.110e-1139.19Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11141contigL-elsbetiae_contig11141:2536..3776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1241
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11141.1028.1prot_L-elsbetiae_contig11141.1028.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11141 2631..3443 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.3885267-UTR-L-elsbetiae_contig11141:2535..26301622815328.3885267-UTR-L-elsbetiae_contig11141:2535..2630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11141 2536..2630 +
1691682841.7144127-UTR-L-elsbetiae_contig11141:2535..26301691682841.7144127-UTR-L-elsbetiae_contig11141:2535..2630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11141 2536..2630 +
1622815328.4208474-UTR-L-elsbetiae_contig11141:3443..37761622815328.4208474-UTR-L-elsbetiae_contig11141:3443..3776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11141 3444..3776 +
1691682841.7349582-UTR-L-elsbetiae_contig11141:3443..37761691682841.7349582-UTR-L-elsbetiae_contig11141:3443..3776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11141 3444..3776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.4043941-CDS-L-elsbetiae_contig11141:2630..34431622815328.4043941-CDS-L-elsbetiae_contig11141:2630..3443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11141 2631..3443 +
1691682841.7258534-CDS-L-elsbetiae_contig11141:2630..34431691682841.7258534-CDS-L-elsbetiae_contig11141:2630..3443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11141 2631..3443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11141.1028.1

>prot_L-elsbetiae_contig11141.1028.1 ID=prot_L-elsbetiae_contig11141.1028.1|Name=mRNA_L-elsbetiae_contig11141.1028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=271bp
MANNEAAESDTDVPDGVSKYPKRPSNWMHTLTLTFCFFGRPAGKNEDHEL
AMCKEGSGPPNRGTKKNKKRESRTGSEGGSSGGGESGEGSSMENPLNPGA
VRQFVGAGESQSRAKVKKETAALVQKDSRDAVRREILEQGKVQMELSQKV
AAAVEQVAANTTAQRVLEEEEACRKRKKQVMDDLEGDLRYCKPGGASSIK
AKIRATHKIRVNEFTAAFVAGDMGTPPGPSAPVITSVVASLPGFSNDNTG
TPGAAGGGATSEGAHGVVSV*
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mRNA from alignment at L-elsbetiae_contig11141:2536..3776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11141.1028.1 ID=mRNA_L-elsbetiae_contig11141.1028.1|Name=mRNA_L-elsbetiae_contig11141.1028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1241bp|location=Sequence derived from alignment at L-elsbetiae_contig11141:2536..3776+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGGTGCCCCGGAAGCAGCGAGCGGTGGTGGTTTGGGGCCCGAGCCG
GAGGAAGGTACAGCGGAGCACCGTCAATGGCTGGCCCAAAAGGCCATGGC
GAACAATGAAGCCGCTGAATCGGACACCGACGTCCCCGATGGCGTTAGTA
AATACCCGAAGCGGCCCAGCAACTGGATGCACACGCTCACCCTGACGTTC
TGCTTTTTCGGTAGGCCGGCCGGGAAGAACGAAGACCACGAGCTCGCGAT
GTGCAAGGAGGGCTCCGGGCCTCCGAACCGCGGCACAAAAAAAAACAAAA
AGAGGGAATCAAGAACTGGCAGCGAAGGTGGAAGCAGCGGTGGCGGAGAA
TCCGGCGAGGGATCCTCCATGGAGAACCCGTTGAACCCAGGCGCCGTGAG
GCAGTTTGTCGGGGCGGGGGAATCGCAGAGCCGGGCGAAGGTTAAGAAAG
AAACGGCGGCGTTGGTGCAGAAGGACTCCCGTGACGCAGTGAGGAGGGAA
ATCCTTGAGCAGGGGAAGGTGCAGATGGAGCTGTCGCAGAAGGTGGCGGC
GGCAGTGGAGCAAGTAGCCGCAAATACGACCGCTCAGCGCGTGCTCGAGG
AGGAGGAGGCCTGCCGCAAGCGCAAGAAACAGGTAATGGACGACCTGGAG
GGCGACCTACGCTACTGCAAACCCGGGGGAGCCTCATCCATCAAGGCCAA
GATACGGGCTACGCACAAGATACGCGTGAACGAATTCACCGCCGCATTCG
TCGCAGGCGACATGGGCACTCCACCTGGTCCCTCCGCCCCAGTGATTACC
TCGGTGGTCGCCTCTTTGCCGGGTTTCTCGAACGACAACACCGGGACACC
AGGGGCTGCAGGTGGTGGGGCTACGTCGGAGGGAGCGCACGGGGTGGTTT
CGGTTTAGAAACACACCGACCTGAGAAGCCCGCCTTGTGGTCCCAAGGAA
AGATCTCCGGGCGCCTTTCGATTGCTGTTATTGTTTTCCGTTATGTCGGC
CACTGAGACCCCCCGCCCCCTCGCACATGTATCTTGATTATGCTGCTTGC
TTCTTCGACCGGAGTAGTCGACTTGGTGCGTTGTTTTGCGTTTATATTTA
TTTGGAGGGAGAGTTCGTGTTATGCTGAATGAAAAATGGTGGCTGCGTTG
TTCGAGATGAGCTGAGTTCATCTGTAATGTTTTTCATTTTTTTTTTGTGT
TTCCAAATGGATGGTTTTGCTGGTTTTTTTTACGCCCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11141:2536..3776+

>mRNA_L-elsbetiae_contig11141.1028.1 ID=mRNA_L-elsbetiae_contig11141.1028.1|Name=mRNA_L-elsbetiae_contig11141.1028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1626bp|location=Sequence derived from alignment at L-elsbetiae_contig11141:2536..3776+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACAATGAAGCCGCTGAATCGGACACCGACGTCCCCGATGGCGT
TAGTAAATACCCGAAGCGGCCCAGCAACTGGATGCACACGCTCACCCTGA
CGTTCTGCTTTTTCGGTAGGCCGGCCGGGAAGAACGAAGACCACGAGCTC
GCGATGTGCAAGGAGGGCTCCGGGCCTCCGAACCGCGGCACAAAAAAAAA
CAAAAAGAGGGAATCAAGAACTGGCAGCGAAGGTGGAAGCAGCGGTGGCG
GAGAATCCGGCGAGGGATCCTCCATGGAGAACCCGTTGAACCCAGGCGCC
GTGAGGCAGTTTGTCGGGGCGGGGGAATCGCAGAGCCGGGCGAAGGTTAA
GAAAGAAACGGCGGCGTTGGTGCAGAAGGACTCCCGTGACGCAGTGAGGA
GGGAAATCCTTGAGCAGGGGAAGGTGCAGATGGAGCTGTCGCAGAAGGTG
GCGGCGGCAGTGGAGCAAGTAGCCGCAAATACGACCGCTCAGCGCGTGCT
CGAGGAGGAGGAGGCCTGCCGCAAGCGCAAGAAACAGGTAATGGACGACC
TGGAGGGCGACCTACGCTACTGCAAACCCGGGGGAGCCTCATCCATCAAG
GCCAAGATACGGGCTACGCACAAGATACGCGTGAACGAATTCACCGCCGC
ATTCGTCGCAGGCGACATGGGCACTCCACCTGGTCCCTCCGCCCCAGTGA
TTACCTCGGTGGTCGCCTCTTTGCCGGGTTTCTCGAACGACAACACCGGG
ACACCAGGGGCTGCAGGTGGTGGGGCTACGTCGGAGGGAGCGCACGGGGT
GGTTTCGGTTTAGATGGCGAACAATGAAGCCGCTGAATCGGACACCGACG
TCCCCGATGGCGTTAGTAAATACCCGAAGCGGCCCAGCAACTGGATGCAC
ACGCTCACCCTGACGTTCTGCTTTTTCGGTAGGCCGGCCGGGAAGAACGA
AGACCACGAGCTCGCGATGTGCAAGGAGGGCTCCGGGCCTCCGAACCGCG
GCACAAAAAAAAACAAAAAGAGGGAATCAAGAACTGGCAGCGAAGGTGGA
AGCAGCGGTGGCGGAGAATCCGGCGAGGGATCCTCCATGGAGAACCCGTT
GAACCCAGGCGCCGTGAGGCAGTTTGTCGGGGCGGGGGAATCGCAGAGCC
GGGCGAAGGTTAAGAAAGAAACGGCGGCGTTGGTGCAGAAGGACTCCCGT
GACGCAGTGAGGAGGGAAATCCTTGAGCAGGGGAAGGTGCAGATGGAGCT
GTCGCAGAAGGTGGCGGCGGCAGTGGAGCAAGTAGCCGCAAATACGACCG
CTCAGCGCGTGCTCGAGGAGGAGGAGGCCTGCCGCAAGCGCAAGAAACAG
GTAATGGACGACCTGGAGGGCGACCTACGCTACTGCAAACCCGGGGGAGC
CTCATCCATCAAGGCCAAGATACGGGCTACGCACAAGATACGCGTGAACG
AATTCACCGCCGCATTCGTCGCAGGCGACATGGGCACTCCACCTGGTCCC
TCCGCCCCAGTGATTACCTCGGTGGTCGCCTCTTTGCCGGGTTTCTCGAA
CGACAACACCGGGACACCAGGGGCTGCAGGTGGTGGGGCTACGTCGGAGG
GAGCGCACGGGGTGGTTTCGGTTTAG
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