mRNA_L-elsbetiae_contig1114.1027.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1114.1027.1
Unique NamemRNA_L-elsbetiae_contig1114.1027.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: D7G8G9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8G9_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 2.870e-94
Identity = 172/290 (59.31%), Postives = 198/290 (68.28%), Query Frame = 1
Query:    4 SVVTVLACVAIPVICAYQYRV--TGPRRQLPRDTAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCASFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLP-DEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMS--GSDSRRR-LLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSGGMFMFLALAGAS 855
            SV  VL CV +PV+  Y  R   T P       TAQ +H RRR QHA  G+ +  GYKW I DARTV+ +LS +CASFL L +LRRR K VD LY+ L+GPLLRP EI G+ PG FWF++G+  AVA+F +DVALQSILHLS+GDPVASVVGIK G+ NR+LP GKSLAGSLAAF+ C++STLLLFG CC  P DEG D  H        DS   SS   + G FSAC  +   G DS      L LW+ALLGGVSGAVGE LPLGVDDNLSMPIVSG    FLAL   S
Sbjct:    9 SVAAVLVCVGLPVLFGYHNRQVETAP-------TAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIACASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGQLPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGRDSDHVG------DSDLLSS--LIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSG--LTFLALRKCS 281          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A485LBM6_9STRA (Aste57867_18956 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBM6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.460e-39
Identity = 92/241 (38.17%), Postives = 132/241 (54.77%), Query Frame = 1
Query:   97 TAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCASFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSG 819
            T Q +H+RR+ QHA SG+ +  G  +A   +  V+I+L  S  +F ++  LR++ KVV+  YL + GP+LR  EI  + PGAFWFLLG+A ++A F +DVA  SILHLS+GDP AS  GI LG  +  L +GK++AG +  FVVC ++++        L D    + HG                                    L  +    +L G++G +GE L LGVDDNLS+P+VSG
Sbjct:   62 TTQQLHIRRKVQHAGSGLLVVAGTFYA--SSVQVVIVLGCSAVAFYIITYLRKQYKVVNTTYLHVFGPILRQHEIAHRLPGAFWFLLGSALSLAFFSKDVAQLSILHLSLGDPCASFFGITLGHHSHKLANGKTIAGVVGCFVVCLLTSIAFLA----LVD--GPVAHGTT----------------------------------LATKGLVMVLAGLAGTLGEALSLGVDDNLSLPLVSG 260          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A6G0XP90_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP90_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.400e-39
Identity = 92/241 (38.17%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   97 TAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCASFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSG 819
            T + +H+RR+ QHA SG+ + L   +    +  V ++L  S A F V+ QLR++SKVV+  YL + GP+LR  EI  + PGAFWFLLG AG++ +FP++VA  SILHLS+GDP AS  GI LG  +  +P+GK+LAG +  FVVC +  +                                       GF +  + S   +   LL +    +    +G +GE L LG DDNLS+PIVSG
Sbjct:   95 TTKQLHIRRKVQHAGSGLLVVLASFYG--SSVQVAVVLICSAAVFYVVTQLRKQSKVVNQTYLHVFGPILRQHEIAYRLPGAFWFLLGCAGSMLLFPKEVAQLSILHLSLGDPCASFFGITLGQNSPKMPNGKTLAGVIGCFVVCLLCNI---------------------------------------GFLSIVDTS--IAHLGLLEKALVVVSCAFAGTLGEALYLGCDDNLSLPIVSG 292          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A024US71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US71_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.600e-38
Identity = 89/243 (36.63%), Postives = 135/243 (55.56%), Query Frame = 1
Query:   97 TAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCASFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSGGM 825
            T Q++H+RR+ QHA SG+ + +G  +A   +  V I+L+ S A+F ++ QLR++ KVV+  YLR+ GP+LR  EI  + PGAFWFLLG  G++ +FP+DVA  S+LHLS+GDP AS+ G+  G     L +GK++AG +    VC ++++        L    + ++H                   L G      M+                L G +G +GE L +G DDNLS+P+VSGG+
Sbjct:   65 TTQELHIRRKIQHAGSGVLVVVGSFFA--SSLQVSIVLACSAAAFYIVAQLRQQYKVVNSTYLRVFGPILRQHEIAHRLPGAFWFLLGCCGSLLLFPKDVAQLSVLHLSLGDPCASLFGLTWGHHTSKLSNGKTIAGVVGCMFVCFVTSV------GFLSVVDTSIQH-------------------LSGIQRVGVMA----------------LCGAAGTLGEVLYVGCDDNLSLPLVSGGV 264          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: W4H9K3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9K3_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.880e-35
Identity = 85/241 (35.27%), Postives = 131/241 (54.36%), Query Frame = 1
Query:   97 TAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCASFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSG 819
            T +++H+RR+ QHA SG+ + +G  +A  ++  V ++L+ S  +F ++ QLR+++ +V+  YL + GP+LR  EI  + PGAFWFLLG + ++ IF +DVA  S+LHLS+GDP AS  G+ LG     L +GK++AG    FVVC  +++        L    + + H                   + G      M+                L GV+G VGE L +G DDNLS+P+VSG
Sbjct:   63 TTKELHVRRKIQHAGSGVLVVVGSFYA--NSLQVSVVLACSAVAFYIVAQLRKQNNIVNDTYLHVFGPILRQHEIAHRLPGAFWFLLGCSISLLIFKKDVAQLSVLHLSLGDPCASFFGLTLGHHTTKLANGKTIAGVAGCFVVCFATSV------AFLSVVDASVAH-------------------VSGIEKAVVMA----------------LCGVAGTVGEVLYVGCDDNLSLPLVSG 260          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A1V9Z468_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z468_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.440e-34
Identity = 79/241 (32.78%), Postives = 129/241 (53.53%), Query Frame = 1
Query:   97 TAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCASFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSG 819
            T Q++HLRR+ QHA +G  I +   +    +    ++L+    +F  +  +R++SK VD +YL++ GP+LR  E+H + PGAF+FL G+A +  ++P+ +A  S+LHLS+GDP AS  GI LG  +  L +GK++AG +  F+VC +S+++                                    L    A    S       ++ Q+ +    GV+GA+GE + +G DDNLSMP++SG
Sbjct:   62 TTQELHLRRKVQHAGTGALIVVATFYG--TSLEASVVLAICALTFYFVSFMRKQSKAVDAIYLQIFGPILRQHEVHHRLPGAFYFLTGSALSFVVYPKFIAQLSVLHLSLGDPCASFFGITLGQHSTRLWNGKTVAGVIGCFLVCLLSSVVFV---------------------------------TLAAHDAVKSFS-------VIKQMLFMAATGVAGAIGEVVNVGCDDNLSMPLLSG 260          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A067D3P6_SAPPC (Phosphatidate cytidylyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D3P6_SAPPC)

HSP 1 Score: 139 bits (349), Expect = 2.650e-34
Identity = 91/271 (33.58%), Postives = 143/271 (52.77%), Query Frame = 1
Query:   34 IPVICAYQYRVTGPRRQLPRDTAQDIHLRRRAQHAASGMGICLG-YKWAIPDARTVLIL--LSFSCASFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSGGMFMFL 837
            I  I A Q+ V          T Q++H+RR+ QHA +G+ I +  +  +  +A  +L +  L+F C SF+     R++SK VD +YL++ GP+LR  E+  + PGAF+FL+G+A +  ++P+ +A  ++LHLS+GDP AS  GI LG  +  L +GK+LAG +  F+VC +S++             +   H                        A  ++S          QL    + G++GA+GE L +G DDNLSMP+ SG +FM L
Sbjct:   39 ISAILALQFLVVKRSNYSNVRTTQELHVRRKVQHAGTGVLIVVATFYGSALEAAVILAICALTFYCVSFM-----RKQSKAVDAIYLQIFGPILRQHEVGHRLPGAFYFLMGSALSFVLYPKFIAQLAVLHLSLGDPCASFFGITLGQHSTKLWNGKTLAGVIGCFLVCLLSSVAFL----------TTATH-----------------------DAITDLS-------TFQQLLLMGMAGIAGAIGEVLNVGCDDNLSMPLFSG-LFMTL 263          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A1W0ABA5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABA5_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.600e-30
Identity = 85/242 (35.12%), Postives = 127/242 (52.48%), Query Frame = 1
Query:   97 TAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCAS-FLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVSG 819
            T Q++H+RR+ QHA +G+ I +   +      TV++ +   CA  F  +   RR+ K VD +YL++ GP+LR  E+  + PGAF+FL G+A +   +P+ +A  S+LHLS+GDP AS  GI LG     L +GK+LAG +  F VC +S++             S + H          +D              A +S        L Q+      G++GA+GE L +G DDNLSMPI+SG
Sbjct:   60 TTQELHVRRKIQHAGTGVLIVIATFYGSSIEATVVLAI---CALIFYGVSVARRQFKAVDTVYLQIFGPILRQHEVGHRLPGAFFFLTGSALSFVFYPKFIAQLSVLHLSLGDPCASFFGITLGHTTSKLWNGKTLAGVIGCFFVCLLSSIAFL----------SFVVH----------HD-------------IAHLS-------WLKQVLIMGTSGIAGAIGEVLNVGCDDNLSMPIISG 258          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A8K1CVZ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVZ7_PYTOL)

HSP 1 Score: 115 bits (288), Expect = 7.460e-26
Identity = 88/266 (33.08%), Postives = 129/266 (48.50%), Query Frame = 1
Query:   34 IPVICAYQYRVTGPRRQLPRDTA---QDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCA-SFLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIH-GKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVS 816
            I VI A+Q+ + G R ++        QD+HL+R+AQHA +G+ I +      P    V +L  F+CA +F  L  LR+RSK VD LYLR    LLR  EI     PGAF+FL+G+   +++FP  +A  +ILHLS GDP AS++G + G R   L SGKS  G L  ++V ++ T +  G                                                   + + + ++ L G+  AV E +  G DDNLS+P++S
Sbjct:   15 IGVIVAFQFLIGGGRARVDVKAIAKRQDLHLQRKAQHAVTGLMIYV-VSGMFPVYADVTVL--FTCALAFYGLHALRKRSKRVDMLYLRCFHGLLRREEIQKAVLPGAFYFLVGSGLVLSLFPTAIARLAILHLSFGDPSASLIGSRFGRRR--LASGKSFEGFLGCWIVASLVTWVESG---------------------------------------------------ISVSITHSALRGLCAAVAESIDFGWDDNLSLPVIS 224          
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Match: A0A2D4BUY6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY6_PYTIN)

HSP 1 Score: 114 bits (285), Expect = 2.010e-25
Identity = 94/269 (34.94%), Postives = 131/269 (48.70%), Query Frame = 1
Query:   34 IPVICAYQYRVTGPR---RQLPRD--TAQDIHLRRRAQHAASGMGICLGYKWAIPDARTVLILLSFSCAS-FLVLDQLRRRSKVVDHLYLRLMGPLLRPSEIHGKQ-PGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASVVGIKLGDRNRVLPS-GKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLRHGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGGVSGAVGEFLPLGVDDNLSMPIVS 816
            +  I  +Q+ + G R   R    D  T Q +HL+R+ QHA +G  I     +   DA  VL+L  FSCA+ F VL  LR+R K VD +YL     LLR  EI     PGAF+FL+GA   +A+FP  +A  +ILHLS+GDP AS+VG     R     S  KSL GSL   V+C++ ++L+     +  D G+                                     S     ++ W A   G+  +V E + +GVDDNLSMP++S
Sbjct:   12 VSAIVLFQFLIGGXRTDDRYARHDAVTRQXLHLQRKLQHALTGXMIFAASGFFTVDA-AVLVL--FSCAAVFYVLHLLRKRFKRVDEVYLSCFHGLLRHDEIRKTVIPGAFYFLVGAGAVLALFPTPIARLAILHLSLGDPTASLVGTXXRYRRASSASTSKSLEGSLGCLVMCSVVSVLV-----ITRDSGT-------------------------------------SEFERFVRAWSA---GLCASVAERIHVGVDDNLSMPLLS 232          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1114.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8G9_ECTSI2.870e-9459.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LBM6_9STRA2.460e-3938.17Aste57867_18956 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XP90_9STRA7.400e-3938.17Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024US71_9STRA2.600e-3836.63Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4H9K3_9STRA1.880e-3535.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9Z468_9STRA1.440e-3432.78Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067D3P6_SAPPC2.650e-3433.58Phosphatidate cytidylyltransferase n=2 Tax=Saprole... [more]
A0A1W0ABA5_9STRA2.600e-3035.12Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A8K1CVZ7_PYTOL7.460e-2633.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BUY6_PYTIN2.010e-2534.94Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1114contigL-elsbetiae_contig1114:23521..27564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.7
Seed ortholog evalue1.7e-67
Seed eggNOG ortholog2880.D7G8G9
Preferred nameDGK1
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
EC2.7.1.174
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1369
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1114.1027.1prot_L-elsbetiae_contig1114.1027.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1114 24020..27417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.2735612-UTR-L-elsbetiae_contig1114:23520..240191622815328.2735612-UTR-L-elsbetiae_contig1114:23520..24019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1114 23521..24019 -
1691682841.6481073-UTR-L-elsbetiae_contig1114:23520..240191691682841.6481073-UTR-L-elsbetiae_contig1114:23520..24019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1114 23521..24019 -
1622815328.3489583-UTR-L-elsbetiae_contig1114:27417..275641622815328.3489583-UTR-L-elsbetiae_contig1114:27417..27564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1114 27418..27564 -
1691682841.702683-UTR-L-elsbetiae_contig1114:27417..275641691682841.702683-UTR-L-elsbetiae_contig1114:27417..27564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1114 27418..27564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.2883716-CDS-L-elsbetiae_contig1114:24019..243851622815328.2883716-CDS-L-elsbetiae_contig1114:24019..24385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 24020..24385 -
1691682841.6602352-CDS-L-elsbetiae_contig1114:24019..243851691682841.6602352-CDS-L-elsbetiae_contig1114:24019..24385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 24020..24385 -
1622815328.3021085-CDS-L-elsbetiae_contig1114:24946..250431622815328.3021085-CDS-L-elsbetiae_contig1114:24946..25043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 24947..25043 -
1691682841.6680706-CDS-L-elsbetiae_contig1114:24946..250431691682841.6680706-CDS-L-elsbetiae_contig1114:24946..25043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 24947..25043 -
1622815328.3170843-CDS-L-elsbetiae_contig1114:26325..265361622815328.3170843-CDS-L-elsbetiae_contig1114:26325..26536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 26326..26536 -
1691682841.681651-CDS-L-elsbetiae_contig1114:26325..265361691682841.681651-CDS-L-elsbetiae_contig1114:26325..26536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 26326..26536 -
1622815328.3338492-CDS-L-elsbetiae_contig1114:27368..274171622815328.3338492-CDS-L-elsbetiae_contig1114:27368..27417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 27369..27417 -
1691682841.692082-CDS-L-elsbetiae_contig1114:27368..274171691682841.692082-CDS-L-elsbetiae_contig1114:27368..27417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1114 27369..27417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1114.1027.1

>prot_L-elsbetiae_contig1114.1027.1 ID=prot_L-elsbetiae_contig1114.1027.1|Name=mRNA_L-elsbetiae_contig1114.1027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MGICLGYKWAIPDARTVLILLSFSCASFLVLDQLRRRSKVVDHLYLRLMG
PLLRPSEIHGKQPGAFWFLLGAAGAVAIFPRDVALQSILHLSVGDPVASV
VGIKLGDRNRVLPSGKSLAGSLAAFVVCAMSTLLLFGSCCLLPDEGSDLR
HGAASGGGRDSYDRSSNGSMLGGFSACAEMSGSDSRRRLLLQLWYALLGG
VSGAVGEFLPLGVDDNLSMPIVSGGMFMFLALAGASGSSP*
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mRNA from alignment at L-elsbetiae_contig1114:23521..27564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1114.1027.1 ID=mRNA_L-elsbetiae_contig1114.1027.1|Name=mRNA_L-elsbetiae_contig1114.1027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4044bp|location=Sequence derived from alignment at L-elsbetiae_contig1114:23521..27564- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGTGTAGTGACTGTACTGGCGTGTGTGGCGATTCCTGTAATTTGTGC ATATCAATACAGAGTGACGGGGCCTAGGCGGCAACTCCCGCGTGATACGG CTCAAGACATTCACTTGAGACGGAGAGCGCAACATGCCGCGTCCGGGATG GGCATTTGTCTGGGCTACAAGTGGGCCATCCCAGACGCGCGGACAGGTGA GGGATGGAGAACTATTGAGGACGGGTTCGGTTTCTGTTTTTGTGGGTAAT GCAACAAGCAGCCTGAGGCTTTGAGCTTTTAGATATGTACGTTTTTGTGG TTTTAAAAATTTGAAAATGTGAATGTTCCGCAGAAAACGTCTCTCTGGTG AATCTGGAGATTACAAGGCTATTCCCCCAATCAGACGTCGCTCATGAACG AATAATGCGGGGGGTGGAGCAAGAGATCAGGCATCCGATACCTGCATGCT GTTCTGCCCGAGCGTTTTCAACGATTTGAAATGGTTGAACACCGGGGGAA GAAACGAAAGGTCGACGCAAAAAATGTGGCGTCTTGGCCTCGGTGCGCCG TGTGTGTGTGCAATCGTAAGAAAAACATAAATGACGAACAGCCAGATACA ACAGAACAGCTGCCAAAGTTGTCAAGGACCTGGACTTGTTGGTTGACTGC TGTTCGAGTTGCGCAACACTATGAAGTTGCCGAGGGCAGTGCGACAGAAC AGCTATCACACTAAAGAGCCAGAACTAGCGTAGTCGCCAAGTGCCGTTGC GCCGTTGCCAGCCTAAAAAGTCTCTTGAAAAGCCTGGTTCCAATGCGTGG CTCGACCAATGGGCTAACGGGCTCACAGACCCTGCACCCAGGGGAAATTC AATATCTACATGTGTTTATTAGCTACTTATGTAGCTTGTCTAGGCGTACA CGATCACACGAATGTATGTATGTATGTATGTACGTATGTACGTATGTACG CTCCAGACGACACGCGCTCTCAATCGAAACTAAGCCCCCCCCCCCCTCTC GCCCCCTCCGCTGGTGACAAAAACACAGTGCTGATACTACTGAGCTTCTC CTGCGCAAGTTTCCTTGTGCTTGACCAGCTGAGGCGTCGGTCGAAGGTTG TGGACCATCTATACCTCCGGCTGATGGGTCCACTGCTCCGCCCCAGCGAG ATTCACGGGAAGCAGCCGGGGGCTTTCTGGTTCCTGCTCGGAGCGGCTGG CGCCGTGGCGATTTTCCCGAGGGACGTAGCGCTGCAGAGGTGAAAGGAAG GGGCAGGCTACATAGCATATATATTTCATGTTTCGACCAATTATCAGCGG GTGTGTCGGTGTCGTTGGGTCCTTGCGTTCGTGAACTTGTTTGTCAAGAA ATCAAAGAAATATTCCCACATCAGAGAAGGGACTCCGTGGTGAATTACAA TTCAATACGACGGTGATGTAGACCAGTGTAGACTACCGTAAAAGTGCGTG AGTTCGCACAGGGGTGCAATCGTTTTTTAAATCATTTCAAACTGGCATTT TTATCGCACATGTGTGCGAACTTACCGACCCTGTGCGAACTTAGCGACCC CTGTGCGGAAACTTAATTAAATCTTTGGTTCTGCTCCTCTAGCGCACACC CCTTGTGCGATATCTCCGACATGTGCGATCCTGACTAAATCACATCAAAG CGGCGGCGATAGAGCTGTTGGAGTACGACAGCGATATTGAGCTCATGGAC GGGCCTGCCCGGAAGTTGGGGGCACAATGGGCGACGAGCTTGAAGTCTCG GTAGTTGCAACCGATGTAGAACACAGCAGTACCCCCGCGTTCTTCGTCTA CGGCCGGTAGACTTTGACAGAGGCAAGAGAGGAGAAAGACATTTAGGGTA CCAGATAGCGGCCGGTTTCATCCTTGAATGTTATGGCGTTCCTACGCATA GAGTGCGAGTTCGGCTGTGAGTGTGCAGAGGTCGAAGAACGGCGAGCTTG CTCGCTACTGGCCCGTGTCTGGGAAGGGGTACGTAGATGGGAAGGTACTC TAAGTACCAAGTTGCGGCAGAGTGCTCATGATTGAAGACCAAAGGAATAT GAGAATGAAGAAATTCCCATTTTTACATATGTGTGCACACTGCCACACTG CAATACGTGAGCAGTGGAGCCCTGTGAGACGAACACAGAAACCGTTGCAG CTCGGGGTGTCCACCCCGTGAACCACTCGCCCGGAGTGGCGTTTCGTTTA TTTTTGGTGCTTGAGTTCGCACCCCTGTGCGAACTCACCGACCCCTGTCC GAAAATCTAATTGAACCATTTCAAACTGGCATTTTTATCGCTCAGGGGTG CGATCTTACCGACCCTGTGCGAACTCACTGCCCTGTGCGAAGTCACGCAC TTTTTAGCATTTTTACGGTAGTATTTTTGTTTTTACAAGTATTGCCGTTC CCCTGACAGCCTATCTCTCTCTCTCTTTCTGTGCGTGTGTTTGTGTGTGT GTGTGTGTTTATGCCTCTTTCTCTTCCTTACACACGACCGGTTAACCGAT TTGTGGAACGTCACGCGGCAGCATTCTTCATCTCTCAGTGGGGGATCCGG TCGCTTCGGTGGTGGGCATAAAATTGGGCGACCGAAACCGAGTGCTCCCG TCGGGAAAGTCTTTGGCGGTAAGGGAAGGGCCTAGCGGGGTGTGTGTCTC TGCGTGACTGCCACCGCGTTAATTTTCTTCCGCGCATTGAAAGTGAACGT CAATGTAAATGTGGCCTAGCTCTCTATTTAGTGTCGATTTCCCGCGCTCA GTCACCAACTTGCCAGCGTGTCTTCTCCCTTTTCGAAATTCAGCCAAACT CTCACATAGTGCGTGTTTGAGCGCGTGAACGCTATCGCTTAGGCCCGACT CGCGAGCGGCGCGAGGGCCGAGATCTTAAGCAACAGAATGAGTACATGTG TAGCTCTTGGATTTATATGGGGTTCCGTCCCAAAGGCGTTCGGCGCGATT CTCGTTTGACCCGATGAATTGGTGTTTCGAGTGCTGTTTGTTTCTCTTCT TGTTTTCTCTCCGACAAGAGTACGTAGCCGATTGCAACCGGCGACACTCG CACGAAATACTTTGCCGATTTACCATGTCGCCGCCGTTGGTCTCGCTGGT ACGACATTCTCTCGGCGCTCATGCATCCCTCCCGCGAATGATTGCGCCCC ATGCTTCGTCGACGAAACATCGAAAAAAGGGCTCCCTCGCAGCATTCGTC GTGTGTGCGATGTCGACGCTGCTGCTCTTCGGCTCCTGCTGCCTCCTACC CGACGAAGGCAGCGACTTGCGGCACGGTGCCGCGAGCGGTGGCGGTAGAG ATAGCTACGATCGGAGCAGCAATGGTTCGATGTTGGGCGGCTTCAGCGCT TGCGCGGAGATGAGCGGCAGCGACAGCCGCAGGAGGCTCCTGCTGCAGCT TTGGTATGCCCTGTTGGGAGGTGTCAGCGGGGCCGTCGGAGAGTTTCTCC CGCTCGGAGTAGACGACAACCTCTCCATGCCAATAGTATCGGGTGGGATG TTCATGTTCTTGGCGTTAGCAGGGGCATCGGGCTCGAGCCCCTAGAGGGG GCAACGTTGTCGTCATACTTCAAAGCACGTGGTCATGATAAATGGTTGGA ATACGGCTATCGTGTTGAGCACTGGAGGTACCACGCGCCGACCTGAGGCG AACGAACGTTGGTGTCCGCGTGAATTGCTTGCAGCGGGAGTTTCAGGTCT CGATGCGTGGGGATTCGGCGCGTGGGTGTAGCGCGTGGAAGTGTGCTGGT GTCCCTCTTGCGAATATTATATGTCTCGCAACGCCCCCAGCTGTCCAAAA GGTGTGTGGGGTACTTCTGAACGGGTGAAAACCTAGTGGTTGCTGCCAAG CAGCATGTTGCTGCTGCTGGGCTTTGAATAGGCGTGGCCTACTGATCTAC TACTATCTGTGAACACATATCAACGAAAATACGTGGTTCTGGCTAGATAG AAGCTCCCGGTCATTTCAGTTGGAACAAATGTGAGACATATGTACCCGAA CTTAACCACTGAGTGAGGACTCTGTTCTGAATGTACCCCGAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1114:23521..27564-

>mRNA_L-elsbetiae_contig1114.1027.1 ID=mRNA_L-elsbetiae_contig1114.1027.1|Name=mRNA_L-elsbetiae_contig1114.1027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig1114:23521..27564- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCATTTGTCTGGGCTACAAGTGGGCCATCCCAGACGCGCGGACAGA
TGGGCATTTGTCTGGGCTACAAGTGGGCCATCCCAGACGCGCGGACAGTG
CTGATACTACTGAGCTTCTCCTGCGCAAGTTTCCTTGTGCTTGACCAGCT
GAGGCGTCGGTCGAAGGTTGTGGACCATCTATACCTCCGGCTGATGGGTC
CACTGCTCCGCCCCAGCGAGATTCACGGGAAGCAGCCGGGGGCTTTCTGG
TTCCTGCTCGGAGCGGCTGGCGCCGTGGCGATTTTCCCGAGGGACGTAGC
GCTGCAGAGTGCTGATACTACTGAGCTTCTCCTGCGCAAGTTTCCTTGTG
CTTGACCAGCTGAGGCGTCGGTCGAAGGTTGTGGACCATCTATACCTCCG
GCTGATGGGTCCACTGCTCCGCCCCAGCGAGATTCACGGGAAGCAGCCGG
GGGCTTTCTGGTTCCTGCTCGGAGCGGCTGGCGCCGTGGCGATTTTCCCG
AGGGACGTAGCGCTGCAGAGCATTCTTCATCTCTCAGTGGGGGATCCGGT
CGCTTCGGTGGTGGGCATAAAATTGGGCGACCGAAACCGAGTGCTCCCGT
CGGGAAAGTCTTTGGCGCATTCTTCATCTCTCAGTGGGGGATCCGGTCGC
TTCGGTGGTGGGCATAAAATTGGGCGACCGAAACCGAGTGCTCCCGTCGG
GAAAGTCTTTGGCGGGCTCCCTCGCAGCATTCGTCGTGTGTGCGATGTCG
ACGCTGCTGCTCTTCGGCTCCTGCTGCCTCCTACCCGACGAAGGCAGCGA
CTTGCGGCACGGTGCCGCGAGCGGTGGCGGTAGAGATAGCTACGATCGGA
GCAGCAATGGTTCGATGTTGGGCGGCTTCAGCGCTTGCGCGGAGATGAGC
GGCAGCGACAGCCGCAGGAGGCTCCTGCTGCAGCTTTGGTATGCCCTGTT
GGGAGGTGTCAGCGGGGCCGTCGGAGAGTTTCTCCCGCTCGGAGTAGACG
ACAACCTCTCCATGCCAATAGTATCGGGTGGGATGTTCATGTTCTTGGCG
TTAGCAGGGGCATCGGGCTCGAGCCCCTAGGGCTCCCTCGCAGCATTCGT
CGTGTGTGCGATGTCGACGCTGCTGCTCTTCGGCTCCTGCTGCCTCCTAC
CCGACGAAGGCAGCGACTTGCGGCACGGTGCCGCGAGCGGTGGCGGTAGA
GATAGCTACGATCGGAGCAGCAATGGTTCGATGTTGGGCGGCTTCAGCGC
TTGCGCGGAGATGAGCGGCAGCGACAGCCGCAGGAGGCTCCTGCTGCAGC
TTTGGTATGCCCTGTTGGGAGGTGTCAGCGGGGCCGTCGGAGAGTTTCTC
CCGCTCGGAGTAGACGACAACCTCTCCATGCCAATAGTATCGGGTGGGAT
GTTCATGTTCTTGGCGTTAGCAGGGGCATCGGGCTCGAGCCCCTAG
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