mRNA_L-elsbetiae_contig11132.1020.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11132.1020.1
Unique NamemRNA_L-elsbetiae_contig11132.1020.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11132.1020.1 vs. uniprot
Match: D8LJI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.980e-31
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 2 
Query:    2 PLLSPGDSLALVHVIDESAEDIIAGEMVDADQVKSDLLSLLSNKRELCYRVRVEKTGRPPEHPTQTVVQRIVKVAEEE 235
            PL+SP DS+ LVH++DESAED+IAGE+ D +QV+SDLLSLLS+KR L +RVRVE TGRPPEHPTQTVVQ+IVKVAEEE
Sbjct:  383 PLVSPRDSVVLVHIVDESAEDVIAGEVADIEQVRSDLLSLLSHKRGLSHRVRVETTGRPPEHPTQTVVQKIVKVAEEE 460
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11132.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJI5_ECTSI3.980e-3176.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11132contigL-elsbetiae_contig11132:3344..5489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.6788483-CDS-L-elsbetiae_contig11132:3343..35251622815327.6788483-CDS-L-elsbetiae_contig11132:3343..3525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11132 3344..3525 -
1691682841.3255959-CDS-L-elsbetiae_contig11132:3343..35251691682841.3255959-CDS-L-elsbetiae_contig11132:3343..3525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11132 3344..3525 -
1622815327.6925926-CDS-L-elsbetiae_contig11132:5392..54891622815327.6925926-CDS-L-elsbetiae_contig11132:5392..5489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11132 5393..5489 -
1691682841.334239-CDS-L-elsbetiae_contig11132:5392..54891691682841.334239-CDS-L-elsbetiae_contig11132:5392..5489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11132 5393..5489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11132.1020.1prot_L-elsbetiae_contig11132.1020.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11132 3344..5489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11132.1020.1

>prot_L-elsbetiae_contig11132.1020.1 ID=prot_L-elsbetiae_contig11132.1020.1|Name=mRNA_L-elsbetiae_contig11132.1020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
TALVSRGLLGARSRHRRERGGHYRRGDGGCRSGQERSTVAAVQQARAVLP
GAGGKDRPPPRAPHADGRAEDRQGRGRGGECAGYFSRNIPVCH
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mRNA from alignment at L-elsbetiae_contig11132:3344..5489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11132.1020.1 ID=mRNA_L-elsbetiae_contig11132.1020.1|Name=mRNA_L-elsbetiae_contig11132.1020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2146bp|location=Sequence derived from alignment at L-elsbetiae_contig11132:3344..5489- (Laminarionema elsbetiae ELsaHSoW15)
ACCGCTCTTGTCTCCCGGGGACTCCTTGGCGCTCGTTCACGTCATCGACG
AGAGCGCGGAGGACATTATCGCCGGGGAGATGGTGGATGCCGATCAGGTG
TGGGTGTGTTGTATGTATACAATACTACATTTGTTTTTTTTTCCCTTCCA
TTGTTTATTGGCTTTTTCGTCGTCTGCCCCGCCGGCCCCCTCTTCCTCCA
CTATGACTATTTAGCTAGACGACCCAACCAACCAGGGTCACACATACATG
TACGTAGGTAAATATATAACTGCATGCTTGGGGGGGGGAAATATTCACGT
TGACAAAGGCAGCGAACGAGAATAGGCTAAAACACAGCGACTAGTAATAA
ATAGAAGAGGGGTGCAAGCGAAGGGTTTCTGATGTTCTGATGCGCATGGG
AATTGGTTTTCTAGGGCTTTGGGGGGCAATAAGGCGACTGCAAGTAAGAC
CACATAGATAAGTCTAGAGTTTTGCGCATACCTAGAAATACATAGCGCGT
CACGTTTTCGAGAAATACTTGCTTCGAGCTGTGCTCGCACAGGCGAGGAA
ATCGATTTTTGACCTTGCCCTGGCTGAACGCCCCCAAAATAGGCGGAGAA
CCTAAATGCGAAGGCACAGGCTTATCTAGTTGGAGAGAAAATGGCCGACA
AAATATTTGTATATACTTTTTATTGCGGGGTTTCACAGTAGTAGTAGGAA
GTAGTGGCGCTGCAGGCAACATACATAGTAGATGGAGAATATTTCGCAAG
CAGGCAGAGAGCGAAAAACACCGGATGCCTGTGGTTGATGACCGCGCACA
CGCGTTGCAGGGGGGCTCCGTCCGTATCACTGTTTTCCGAAGAAAATCAT
GCCAACGAGTCCTGGTGACGACGCCACAAAACACAAAGCGCTGCGTATAC
TTCCTGTGGGATGTGTGGTCAGCCTCGTGCAGCTCAGCTCCGACTTCTGT
AGTGCAGATTCAGATCAAAAAATCTGAAATTCTACCGTGTATTTAGTACT
CTTCATATGTTGTGGCGAGAGGACAGCTGATCATGTACCCTTATTTTTAG
TAGGATACATAGCACCGACGAAGTCATAATCTGGGCTTCCTAACGAGAGT
ATTCACGATATATTTGGAAGGTAGACATGTCATCAAACCAGCTGAATGCT
GCGGCGCCGGTTCAGGAAACAAAAGTCGCTAGTTTCATCGTCGCCTTTTT
CAAGGCGCACCAGGCACACACACTGCACCATTGCTCCCCAAACTTGGCTC
CGGCACGGACACAGCAATGAAGCACATGTCCTCGTTGGTAAAATTGCAGC
CGTATCTCTGTGAGGCGAGCACTGAACGAAAATGAGCGATTCTCAGCCGG
AATCACAAACAACTCCGAGTTGAGACTGGATCGGGGGTTTAACCCTATGA
TCCCCGCCGGCCCATAGCGAACGCTGTACTCTTGTATGTAGTGCAGACCA
CAAATCCACCTGATTTTTCCTGGAATGTTCGGTCTTTCTAAAGTACTTTC
CCTGCGTTGTGGCTAAAGGAAGGCTAATTGTGTGAATTTTTTTGAGTAGG
ACGGCGCCCGCGAAGTTAGCCCACCGAGAGCTGAAAAAGAAGGCTGCTAC
ATATGAAGAGCAGCAACCGAATCAGTTTCGGTTGCGACCGCCGACGATTT
CGCTGCTTTAAAGCACACCAGCGGCGTAAAAAGTGTTCGCGAACATAGTT
CATGGTGGTCCTGTCGGAGGCTGAGGTCTGGGCGAGGTGTCCCAGCGGGG
TGCCTTAGGTCACGACCCAAAATAGGCCCGCTCTCGCATAAAAAACGAGG
GGGGTCCGGGGATTCGCGGTGGTACCCATTTCGACCTTTGGTAATACTTT
TTTGGCTTTTTTTGTGTGCCGCGGGGTGGGTGCAACAAACACCTGCGCAC
GCCACGTGCATCATTCCATTCTATTCCATTTCACGTCGCCACTCGCTGCT
GTTGTGACGCACAGGTCAAGAGCGATCTACTGTCGCTGCTGTCCAACAAG
CGCGAGCTGTGCTACCGGGTGCGGGTGGAAAAGACCGGCCGCCCCCCCGA
GCACCCCACGCAGACGGTCGTGCAGAGGATCGTCAAGGTCGCGGAAGAGG
AGGTGAATGCGCGGGCTATTTTTCACGGAACATTCCAGTATGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11132:3344..5489-

>mRNA_L-elsbetiae_contig11132.1020.1 ID=mRNA_L-elsbetiae_contig11132.1020.1|Name=mRNA_L-elsbetiae_contig11132.1020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig11132:3344..5489- (Laminarionema elsbetiae ELsaHSoW15)
ACCGCTCTTGTCTCCCGGGGACTCCTTGGCGCTCGTTCACGTCATCGACG
AGAGCGCGGAGGACATTATCGCCGGGGAGATGGTGGATGCCGATCAGACC
GCTCTTGTCTCCCGGGGACTCCTTGGCGCTCGTTCACGTCATCGACGAGA
GCGCGGAGGACATTATCGCCGGGGAGATGGTGGATGCCGATCAGGTCAAG
AGCGATCTACTGTCGCTGCTGTCCAACAAGCGCGAGCTGTGCTACCGGGT
GCGGGTGGAAAAGACCGGCCGCCCCCCCGAGCACCCCACGCAGACGGTCG
TGCAGAGGATCGTCAAGGTCGCGGAAGAGGAGGTGAATGCGCGGGCTATT
TTTCACGGAACATTCCAGTATGCCACGTCAAGAGCGATCTACTGTCGCTG
CTGTCCAACAAGCGCGAGCTGTGCTACCGGGTGCGGGTGGAAAAGACCGG
CCGCCCCCCCGAGCACCCCACGCAGACGGTCGTGCAGAGGATCGTCAAGG
TCGCGGAAGAGGAGGTGAATGCGCGGGCTATTTTTCACGGAACATTCCAG
TATGCCAC
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