mRNA_L-elsbetiae_contig11131.1018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11131.1018.1
Unique NamemRNA_L-elsbetiae_contig11131.1018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11131.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11131contigL-elsbetiae_contig11131:157..785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size631
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.5804434-UTR-L-elsbetiae_contig11131:156..4641622815327.5804434-UTR-L-elsbetiae_contig11131:156..464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11131 157..464 +
1691682841.275602-UTR-L-elsbetiae_contig11131:156..4641691682841.275602-UTR-L-elsbetiae_contig11131:156..464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11131 157..464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.5909746-CDS-L-elsbetiae_contig11131:464..7851622815327.5909746-CDS-L-elsbetiae_contig11131:464..785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11131 465..785 +
1691682841.2859797-CDS-L-elsbetiae_contig11131:464..7851691682841.2859797-CDS-L-elsbetiae_contig11131:464..785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11131 465..785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11131.1018.1prot_L-elsbetiae_contig11131.1018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11131 465..785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11131.1018.1

>prot_L-elsbetiae_contig11131.1018.1 ID=prot_L-elsbetiae_contig11131.1018.1|Name=mRNA_L-elsbetiae_contig11131.1018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MARLMPTPNESVTFSTNSNENSKKGCGSVSPSPSLLSSPSLSTPRLLLLL
LLPSVLRKPPSSPAANSPLRTQKRDNQKRPPPDNKSLKKKRQETQKRGCM
WLRTRTN
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mRNA from alignment at L-elsbetiae_contig11131:157..785+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11131.1018.1 ID=mRNA_L-elsbetiae_contig11131.1018.1|Name=mRNA_L-elsbetiae_contig11131.1018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=629bp|location=Sequence derived from alignment at L-elsbetiae_contig11131:157..785+ (Laminarionema elsbetiae ELsaHSoW15)
AGTCTATATATCTATTAACCCTAGTGCGACTGGCGTGGAGGACGTGCGCG
GCCGCGTGCCTTCGTGATTTGTGTCTCTTGTGTGGGGGTGTTGGTTGTCC
AGCTTTTTACATACACAGGTCGAGGGGAGAGGCGACGTTGTTACTGCTGT
CCATCACACCTCTCCACGGGATGGATGCGACAGAGGGAAGCCAAAATAAA
ATGGTTCAAGGCGGAATGGAATGCGTGTGCGCAAACGGTTTCCCGTGGAC
TTTCCCTGCATACGCGCCCCAATGGTCTTAGGTTGGTTGTGGGCCCTGCT
GTCGAAACATGGCGCGCTTGATGCCAACTCCAAATGAGAGTGTAACTTTC
AGCACCAACTCAAACGAGAACTCAAAAAAAGGGTGTGGGTCAGTCAGTCC
GTCTCCATCTCTCCTCTCCTCGCCGAGTCTTTCGACGCCGCGGCTGCTGC
TGCTGCTACTGCTACCCAGCGTTCTCCGCAAGCCCCCTTCCTCCCCGGCG
GCGAATTCGCCACTCCGGACACAAAAACGCGACAACCAAAAGAGGCCCCC
CCCCGACAACAAAAGCCTAAAAAAAAAAAGACAAGAAACACAAAAAAGGG
GGTGTATGTGGCTGCGTACACGCACGAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11131:157..785+

>mRNA_L-elsbetiae_contig11131.1018.1 ID=mRNA_L-elsbetiae_contig11131.1018.1|Name=mRNA_L-elsbetiae_contig11131.1018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig11131:157..785+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGCTTGATGCCAACTCCAAATGAGAGTGTAACTTTCAGCACCAA
CTCAAACGAGAACTCAAAAAAAGGGTGTGGGTCAGTCAGTCCGTCTCCAT
CTCTCCTCTCCTCGCCGAGTCTTTCGACGCCGCGGCTGCTGCTGCTGCTA
CTGCTACCCAGCGTTCTCCGCAAGCCCCCTTCCTCCCCGGCGGCGAATTC
GCCACTCCGGACACAAAAACGCGACAACCAAAAGAGGCCCCCCCCCGACA
ACAAAAGCCTAAAAAAAAAAAGACAAGAAACACAAAAAAGGGGGTGTATG
TGGCTGCGTACACGCACGAATATGGCGCGCTTGATGCCAACTCCAAATGA
GAGTGTAACTTTCAGCACCAACTCAAACGAGAACTCAAAAAAAGGGTGTG
GGTCAGTCAGTCCGTCTCCATCTCTCCTCTCCTCGCCGAGTCTTTCGACG
CCGCGGCTGCTGCTGCTGCTACTGCTACCCAGCGTTCTCCGCAAGCCCCC
TTCCTCCCCGGCGGCGAATTCGCCACTCCGGACACAAAAACGCGACAACC
AAAAGAGGCCCCCCCCCGACAACAAAAGCCTAAAAAAAAAAAGACAAGAA
ACACAAAAAAGGGGGTGTATGTGGCTGCGTACACGCACGAAT
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