mRNA_L-elsbetiae_contig11130.1017.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11130.1017.1
Unique NamemRNA_L-elsbetiae_contig11130.1017.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: D7FXL6_ECTSI (DNA-damage-inducible protein f, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.220e-18
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLAQVN 138
            LSNPIMSLVDTAVVGAQSS+ELAALGP TS+CDNLAY+CGFLAQV 
Sbjct:  368 LSNPIMSLVDTAVVGAQSSVELAALGPGTSVCDNLAYMCGFLAQVT 413
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: A0A6H5L6W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.530e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLAQ 132
            LSNPIMSLVDTAVVGAQSS+ELAALGP TS+CDNLAY+CGFLAQ
Sbjct:  359 LSNPIMSLVDTAVVGAQSSVELAALGPGTSVCDNLAYMCGFLAQ 402
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: A0A7J6FXG5_CANSA (Protein DETOXIFICATION n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6FXG5_CANSA)

HSP 1 Score: 61.6 bits (148), Expect = 8.160e-10
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            +  P+MSL+DTAV+G +SS+ELAALGPAT LCDNL+Y+  FL+
Sbjct:  137 ICGPLMSLIDTAVIGQRSSLELAALGPATVLCDNLSYLFMFLS 179
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: A0A2P5BGR9_PARAD (Protein DETOXIFICATION n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BGR9_PARAD)

HSP 1 Score: 60.8 bits (146), Expect = 1.520e-9
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            +  P+MSL+DTAV+G  SS+ELAALGPAT LCDNL+Y+  FL+
Sbjct:  139 ICGPLMSLIDTAVIGQGSSLELAALGPATVLCDNLSYVFMFLS 181
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: UPI0011D27C37 (protein DETOXIFICATION 47, chloroplastic-like n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D27C37)

HSP 1 Score: 59.3 bits (142), Expect = 1.800e-9
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            +  P+MSL+DTAV+G  SSIELAALGP T LCDN++Y+  FL+
Sbjct:  127 ICGPLMSLIDTAVIGQGSSIELAALGPGTVLCDNMSYVFMFLS 169
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: A0A392Q5P4_9FABA (MATE efflux family protein 4 chloroplastic-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q5P4_9FABA)

HSP 1 Score: 56.2 bits (134), Expect = 2.180e-9
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            L  P+MSL+DTAVVG  SSIELAALGPAT  CD L+Y   FL+
Sbjct:    6 LCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLSYSFMFLS 48
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: M0ZV32_SOLTU (DNA-damage-inducible protein f n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M0ZV32_SOLTU)

HSP 1 Score: 60.1 bits (144), Expect = 2.320e-9
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            LS P+MSL+DTAVVG  SSIELAALGP T  CDN +YI  FL+
Sbjct:  115 LSGPLMSLIDTAVVGQGSSIELAALGPGTVFCDNTSYIFMFLS 157
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: D8QUJ5_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QUJ5_SELML)

HSP 1 Score: 60.1 bits (144), Expect = 2.790e-9
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            LS PIMSL+DT+V+G  SS+ELAALGP T LCD L+Y+  FL+
Sbjct:   20 LSGPIMSLIDTSVIGTSSSLELAALGPGTVLCDGLSYLFMFLS 62
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: D8T1A8_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T1A8_SELML)

HSP 1 Score: 60.1 bits (144), Expect = 2.840e-9
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            LS PIMSL+DT+V+G  SS+ELAALGP T LCD L+Y+  FL+
Sbjct:   16 LSGPIMSLIDTSVIGTSSSLELAALGPGTVLCDGLSYLFMFLS 58
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BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Match: M0ZV31_SOLTU (Protein DETOXIFICATION n=6 Tax=Solanum TaxID=4107 RepID=M0ZV31_SOLTU)

HSP 1 Score: 60.1 bits (144), Expect = 2.850e-9
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 LSNPIMSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLA 129
            LS P+MSL+DTAVVG  SSIELAALGP T  CDN +YI  FL+
Sbjct:  115 LSGPLMSLIDTAVVGQGSSIELAALGPGTVFCDNTSYIFMFLS 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11130.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL6_ECTSI3.220e-1889.13DNA-damage-inducible protein f, putative n=1 Tax=E... [more]
A0A6H5L6W0_9PHAE1.530e-1790.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7J6FXG5_CANSA8.160e-1065.12Protein DETOXIFICATION n=2 Tax=Cannabis sativa Tax... [more]
A0A2P5BGR9_PARAD1.520e-965.12Protein DETOXIFICATION n=2 Tax=Cannabaceae TaxID=3... [more]
UPI0011D27C371.800e-962.79protein DETOXIFICATION 47, chloroplastic-like n=1 ... [more]
A0A392Q5P4_9FABA2.180e-967.44MATE efflux family protein 4 chloroplastic-like (F... [more]
M0ZV32_SOLTU2.320e-969.77DNA-damage-inducible protein f n=1 Tax=Solanum tub... [more]
D8QUJ5_SELML2.790e-965.12Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
D8T1A8_SELML2.840e-965.12Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
M0ZV31_SOLTU2.850e-969.77Protein DETOXIFICATION n=6 Tax=Solanum TaxID=4107 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11130contigL-elsbetiae_contig11130:268..414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.1e-12
Seed eggNOG ortholog2880.D7FXL6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionFlagellin assembly, membrane protein MviN
Ec32 orthologEc-28_002170.1
Exons1
Model size147
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.534015-CDS-L-elsbetiae_contig11130:267..3991622815327.534015-CDS-L-elsbetiae_contig11130:267..399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11130 268..399 -
1691682841.2477396-CDS-L-elsbetiae_contig11130:267..3991691682841.2477396-CDS-L-elsbetiae_contig11130:267..399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11130 268..399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.5450845-UTR-L-elsbetiae_contig11130:399..4141622815327.5450845-UTR-L-elsbetiae_contig11130:399..414Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11130 400..414 -
1691682841.2661512-UTR-L-elsbetiae_contig11130:399..4141691682841.2661512-UTR-L-elsbetiae_contig11130:399..414Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11130 400..414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11130.1017.1prot_L-elsbetiae_contig11130.1017.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11130 268..399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11130.1017.1

>prot_L-elsbetiae_contig11130.1017.1 ID=prot_L-elsbetiae_contig11130.1017.1|Name=mRNA_L-elsbetiae_contig11130.1017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MSLVDTAVVGAQSSIELAALGPATSLCDNLAYICGFLAQVNFY*
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mRNA from alignment at L-elsbetiae_contig11130:268..414-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11130.1017.1 ID=mRNA_L-elsbetiae_contig11130.1017.1|Name=mRNA_L-elsbetiae_contig11130.1017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=147bp|location=Sequence derived from alignment at L-elsbetiae_contig11130:268..414- (Laminarionema elsbetiae ELsaHSoW15)
CTGTCAAACCCTATAATGTCGTTGGTGGACACTGCTGTGGTCGGCGCTCA
GAGCTCGATAGAGCTGGCAGCGCTGGGCCCCGCGACGTCGTTGTGCGACA
ACCTGGCCTACATTTGTGGCTTCTTGGCCCAGGTAAATTTCTACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11130:268..414-

>mRNA_L-elsbetiae_contig11130.1017.1 ID=mRNA_L-elsbetiae_contig11130.1017.1|Name=mRNA_L-elsbetiae_contig11130.1017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig11130:268..414- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTTGGTGGACACTGCTGTGGTCGGCGCTCAGAGCTCGATAGAGCT
GGCAGCGCTGGGCCCCGCGACGTCGTTGTGCGACAACCTGGCCTACATTT
GTGGCTTCTTGGCCCAGGTAAATTTCTACTAAATGTCGTTGGTGGACACT
GCTGTGGTCGGCGCTCAGAGCTCGATAGAGCTGGCAGCGCTGGGCCCCGC
GACGTCGTTGTGCGACAACCTGGCCTACATTTGTGGCTTCTTGGCCCAGG
TAAATTTCTACTAA
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