mRNA_L-elsbetiae_contig1113.1013.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1113.1013.1
Unique NamemRNA_L-elsbetiae_contig1113.1013.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1113.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1113contigL-elsbetiae_contig1113:6972..7331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.0201707-CDS-L-elsbetiae_contig1113:6971..73311622815327.0201707-CDS-L-elsbetiae_contig1113:6971..7331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1113 6972..7331 +
1691682840.9091768-CDS-L-elsbetiae_contig1113:6971..73311691682840.9091768-CDS-L-elsbetiae_contig1113:6971..7331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1113 6972..7331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1113.1013.1prot_L-elsbetiae_contig1113.1013.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1113 6972..7331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1113.1013.1

>prot_L-elsbetiae_contig1113.1013.1 ID=prot_L-elsbetiae_contig1113.1013.1|Name=mRNA_L-elsbetiae_contig1113.1013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
HVDTLATPEWSVPCDLSNATQMNATGRCSFSDRICACPAPAYSRSRREKL
LPLWCGSRFIAQLFRTNRARLRVVPHPTHTMGRKLLKAWKRDNIYIPPFA
LRYHHMSSKLYACCGSSVPP
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mRNA from alignment at L-elsbetiae_contig1113:6972..7331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1113.1013.1 ID=mRNA_L-elsbetiae_contig1113.1013.1|Name=mRNA_L-elsbetiae_contig1113.1013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig1113:6972..7331+ (Laminarionema elsbetiae ELsaHSoW15)
CATGTCGACACGCTCGCAACCCCGGAGTGGTCGGTGCCGTGCGACCTGAG
CAACGCAACACAAATGAATGCCACCGGACGGTGCAGCTTTTCAGATCGGA
TCTGCGCGTGCCCCGCACCGGCATACTCCAGATCCCGGCGCGAAAAGTTG
CTCCCTCTCTGGTGTGGTTCCCGCTTCATCGCGCAACTTTTCCGCACAAA
TCGAGCGCGCCTCCGAGTGGTGCCGCACCCCACGCACACAATGGGACGAA
AACTTTTGAAAGCTTGGAAGAGGGACAACATATATATTCCCCCCTTTGCA
CTTAGATACCACCACATGTCTTCAAAGCTTTACGCTTGTTGCGGCAGCTC
CGTCCCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1113:6972..7331+

>mRNA_L-elsbetiae_contig1113.1013.1 ID=mRNA_L-elsbetiae_contig1113.1013.1|Name=mRNA_L-elsbetiae_contig1113.1013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig1113:6972..7331+ (Laminarionema elsbetiae ELsaHSoW15)
CATGTCGACACGCTCGCAACCCCGGAGTGGTCGGTGCCGTGCGACCTGAG
CAACGCAACACAAATGAATGCCACCGGACGGTGCAGCTTTTCAGATCGGA
TCTGCGCGTGCCCCGCACCGGCATACTCCAGATCCCGGCGCGAAAAGTTG
CTCCCTCTCTGGTGTGGTTCCCGCTTCATCGCGCAACTTTTCCGCACAAA
TCGAGCGCGCCTCCGAGTGGTGCCGCACCCCACGCACACAATGGGACGAA
AACTTTTGAAAGCTTGGAAGAGGGACAACATATATATTCCCCCCTTTGCA
CTTAGATACCACCACATGTCTTCAAAGCTTTACGCTTGTTGCGGCAGCTC
CGTCCCGCCGCATGTCGACACGCTCGCAACCCCGGAGTGGTCGGTGCCGT
GCGACCTGAGCAACGCAACACAAATGAATGCCACCGGACGGTGCAGCTTT
TCAGATCGGATCTGCGCGTGCCCCGCACCGGCATACTCCAGATCCCGGCG
CGAAAAGTTGCTCCCTCTCTGGTGTGGTTCCCGCTTCATCGCGCAACTTT
TCCGCACAAATCGAGCGCGCCTCCGAGTGGTGCCGCACCCCACGCACACA
ATGGGACGAAAACTTTTGAAAGCTTGGAAGAGGGACAACATATATATTCC
CCCCTTTGCACTTAGATACCACCACATGTCTTCAAAGCTTTACGCTTGTT
GCGGCAGCTCCGTCCCGCCG
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