mRNA_L-elsbetiae_contig11122.1010.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11122.1010.1
Unique NamemRNA_L-elsbetiae_contig11122.1010.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5K3J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.080e-11
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  217 LTLRKHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
              L + FLLHD+PAY+AFR A+RTGD MLRL A RRIAPIFYIT
Sbjct:  325 FALWQQFLLHDFPAYMAFRTALRTGDFMLRLDALRRIAPIFYIT 368
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BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5J9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.310e-11
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  217 LTLRKHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
              L K FLLHD+PAY+ FR A+RTGD MLRL A RRIAPIFYIT
Sbjct:  605 FALWKQFLLHDFPAYMTFRTALRTGDFMLRLDALRRIAPIFYIT 648
[Close]
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5JDT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.620e-11
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  217 LTLRKHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
              L + FLLHD+PAYV FR A+RTGD MLRL A RRIAPIFYIT
Sbjct:  327 FALWEQFLLHDFPAYVTFRTALRTGDFMLRLDALRRIAPIFYIT 370
[Close]
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-10
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  208 ESHLTLR--KHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
            ESH T    K FLLHDYPAY+AFR A+RTG+  LRL   RRIAPIF+IT
Sbjct:   38 ESHKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFIT 86
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BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.530e-10
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  208 ESHLTLR--KHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
            ESH T    K FLLHDYPAY+AFR A+RTG+  LRL   RRIAPIF+IT
Sbjct: 1037 ESHKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFIT 1085
[Close]
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5KVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.800e-10
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  217 LTLRKHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
              L + FLLHD+PAY+ FR A+RTGD MLRL A RRIAPIFYI+
Sbjct:   43 FALWEQFLLHDFPAYLTFRTALRTGDFMLRLDALRRIAPIFYIS 86
[Close]
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5L1K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K3_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.160e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  208 ESH--LTLRKHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
            ESH    + K FLLHDYPAY+AFR A+RTG+  LRL   RRIAPIF+IT
Sbjct:  363 ESHKAFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFIT 411
[Close]
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5JA33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA33_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.340e-10
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  193 ARTPHESHLTLRKHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
            ART       + K FLLHDYPAY+AFR A+RTG+  LRL    RIAPIF+IT
Sbjct:  109 ARTGSRKTFVVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLHRIAPIFFIT 160
[Close]
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5JR31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR31_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 9.430e-10
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  217 LTLRKHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
              L + FLLHD+PAY+ FR A+RTGD MLRL A  RIAPIFYIT
Sbjct:  685 FALWEQFLLHDFPAYMTFRIALRTGDFMLRLDALHRIAPIFYIT 728
[Close]
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Match: A0A6H5KQU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU3_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.210e-9
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  208 ESHLTLR--KHFLLHDYPAYVAFRAAIRTGDLMLRLAAFRRIAPIFYIT 348
            E+H T    K FLLHDYPAY+AFR A+RTG+  LRL A  RIAPIFY T
Sbjct:  298 EAHKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLDALHRIAPIFYST 346
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11122.1010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K3J0_9PHAE4.080e-1172.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9K2_9PHAE4.310e-1172.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDT2_9PHAE5.620e-1172.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG2_9PHAE1.490e-1067.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.530e-1067.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVM9_9PHAE2.800e-1068.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1K3_9PHAE5.160e-1065.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA33_9PHAE7.340e-1059.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR31_9PHAE9.430e-1068.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQU3_9PHAE1.210e-965.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11122contigL-elsbetiae_contig11122:2419..3564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue9.5e-08
Seed eggNOG ortholog2880.D7FIA9
Hectar predicted targeting categoryother localisation
EggNOG OGs2D5KK@1,2SYVY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionsimilar to solute carrier family 35, member F4
Ec32 orthologEc-05_000300.1
Exons2
Model size350
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.6932697-CDS-L-elsbetiae_contig11122:2420..27311622815326.6932697-CDS-L-elsbetiae_contig11122:2420..2731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11122 2421..2731 -
1691682840.803921-CDS-L-elsbetiae_contig11122:2420..27311691682840.803921-CDS-L-elsbetiae_contig11122:2420..2731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11122 2421..2731 -
1622815326.703288-CDS-L-elsbetiae_contig11122:3527..35641622815326.703288-CDS-L-elsbetiae_contig11122:3527..3564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11122 3528..3564 -
1691682840.8165843-CDS-L-elsbetiae_contig11122:3527..35641691682840.8165843-CDS-L-elsbetiae_contig11122:3527..3564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11122 3528..3564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11122.1010.1prot_L-elsbetiae_contig11122.1010.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11122 2421..3564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11122.1010.1

>prot_L-elsbetiae_contig11122.1010.1 ID=prot_L-elsbetiae_contig11122.1010.1|Name=mRNA_L-elsbetiae_contig11122.1010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
KEPGSRRGTFAIVYVLRVPRSFMKRRTRWPPVGAASDRRIHGGHRRTRPG
IRPPGRSHRGGMCRARTPHESHLTLRKHFLLHDYPAYVAFRAAIRTGDLM
LRLAAFRRIAPIFYIT
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mRNA from alignment at L-elsbetiae_contig11122:2419..3564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11122.1010.1 ID=mRNA_L-elsbetiae_contig11122.1010.1|Name=mRNA_L-elsbetiae_contig11122.1010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig11122:2419..3564- (Laminarionema elsbetiae ELsaHSoW15)
AAGGAACCTGGCTCAAGACGTGGAACCTTCGCCATAGGTGCGTAGTTTCG
GTCCGTGGGCATCATAGGACGATGATTTTGTGGCAGAGTATGTTAGGCAG
AGGGAGATATACGGGAAATGTTGCGAGCGTACCACCAAGAATCCCCCGCC
GAGATGACGGACTGGTGTGCCGACGCATGCTAGCCGCGTAGCCTATGATG
TGTGTTTCATCACAACGACACCCATTCTCGATAGCCAGCTTAACATGCGA
CATATTTCAATTGTTGGTTGTTTGGAACAAGTTTGCAAAAATAAGCACGA
CAGTGTCAAAGGAAAACGGACGACGCCACGTTACGGCGCCGCCACCAAGG
GTACACCCTATCGGCAACGGCAAAAATCGAGAATCGAGAATATGATAGAC
TCCAGTAGTTCCTCTGTCTATTTGAAAAAGAACTACGATAAATGGTCAAG
CGAAATTCAAGTTTGACCTTGAGCAAAGGTCATGGTGATCAAAATGTTGT
CCGTGTCGGACGCTTCTTACTTTCCGCCTCTAGGTGTGCGTTTGGTGCTG
TACACACCCCATAACCGCAGAAAAATATGCAACCTTCGTTTCATACAGCC
ATGTTTGTCTTCTACCTGCTGGAAGAGGCTCTGGGTGATTTCGTATTCAG
AGAGACAAGCACGACCACATCAAAGTTAGCTTACGGTTATGTACCAAGAA
ACCGGTTTCGGTGGGCGAAGGAGCGGCTGCCATGTGCTATGTATGCAAGA
ACCACGATTACTTACGCACGTACACGTTTTTTTTTGTTTTTCCCTTGTTA
TTTATCTTACCGCTATCTGCCATCTCCGATTAGTTTATGTGCTCAGAGTG
CCACGGAGCTTCATGAAACGTCGTACCCGGTGGCCTCCAGTGGGGGCGGC
ATCGGACCGGCGGATTCACGGCGGACACCGCCGGACTCGCCCCGGAATCC
GACCACCGGGCCGCTCACACCGAGGAGGAATGTGCAGAGCCCGCACCCCT
CACGAGTCCCATTTGACCCTACGGAAGCACTTCCTCCTCCATGATTACCC
TGCCTACGTCGCCTTCCGGGCCGCGATACGAACGGGTGACTTAATGTTGA
GGCTTGCTGCTTTTCGCCGGATCGCCCCGATTTTCTACATCACCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11122:2419..3564-

>mRNA_L-elsbetiae_contig11122.1010.1 ID=mRNA_L-elsbetiae_contig11122.1010.1|Name=mRNA_L-elsbetiae_contig11122.1010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig11122:2419..3564- (Laminarionema elsbetiae ELsaHSoW15)
AAGGAACCTGGCTCAAGACGTGGAACCTTCGCCATAGAAGGAACCTGGCT
CAAGACGTGGAACCTTCGCCATAGTTTATGTGCTCAGAGTGCCACGGAGC
TTCATGAAACGTCGTACCCGGTGGCCTCCAGTGGGGGCGGCATCGGACCG
GCGGATTCACGGCGGACACCGCCGGACTCGCCCCGGAATCCGACCACCGG
GCCGCTCACACCGAGGAGGAATGTGCAGAGCCCGCACCCCTCACGAGTCC
CATTTGACCCTACGGAAGCACTTCCTCCTCCATGATTACCCTGCCTACGT
CGCCTTCCGGGCCGCGATACGAACGGGTGACTTAATGTTGAGGCTTGCTG
CTTTTCGCCGGATCGCCCCGATTTTCTACATCACCTTTATGTGCTCAGAG
TGCCACGGAGCTTCATGAAACGTCGTACCCGGTGGCCTCCAGTGGGGGCG
GCATCGGACCGGCGGATTCACGGCGGACACCGCCGGACTCGCCCCGGAAT
CCGACCACCGGGCCGCTCACACCGAGGAGGAATGTGCAGAGCCCGCACCC
CTCACGAGTCCCATTTGACCCTACGGAAGCACTTCCTCCTCCATGATTAC
CCTGCCTACGTCGCCTTCCGGGCCGCGATACGAACGGGTGACTTAATGTT
GAGGCTTGCTGCTTTTCGCCGGATCGCCCCGATTTTCTACATCACC
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