mRNA_L-elsbetiae_contig11121.1008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11121.1008.1
Unique NamemRNA_L-elsbetiae_contig11121.1008.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 7.650e-116
Identity = 172/209 (82.30%), Postives = 187/209 (89.47%), Query Frame = 1 
Query:    1 AMQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPKEDPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGHEAEWRE 627
            AM+ MF PPPPLEFK+S+CKRK P V+G+AAMLK    KG   LFE+G     EKFETPRQ+H+RIAAAKKK DEEGLK+KI+ WNPK+DPK KGDAYKTLFI+KISYDTTEKKLRREFEQ+G I S+RMVQDEDGKPRGYAFVEYENEDDMR+AYKRGDGRKIDGRRV VDVERGRTVRNWLPRRFGGGLGDSRKERPKKGHEAEWRE
Sbjct:   26 AMRAMFEPPPPLEFKKSVCKRKPPTVEGVAAMLKG---KGAANLFEKGVPPPPEKFETPRQKHARIAAAKKKTDEEGLKDKISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGHEAEWRE 231
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: H6WBA2_VAULI (RRM domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA2_VAULI)

HSP 1 Score: 223 bits (567), Expect = 5.550e-68
Identity = 113/203 (55.67%), Postives = 146/203 (71.92%), Query Frame = 1 
Query:    4 MQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPKEDPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGHE 612
            ++ MF P PPL +K  I KR  P V G+            + +FE+ P      +ETP+QRH+R+  AK + +E  ++ +I  WNPK+DP A GDAYKTLF++ +SYDT+EKKLRREFEQYG I  +R+V D + +PRGYAF+EYE E+DM +AYK+ DGRK+D RR+ VDVERGRTVRNW PRRFGGGLG+SRK +PKKG E
Sbjct:   28 LKPMFDPRPPLLWKPPINKRVAPYVTGLVKY---------KDVFEKIPPPPIIPYETPKQRHARLREAKIRENEAKIEREIKKWNPKKDPNATGDAYKTLFVANMSYDTSEKKLRREFEQYGQIKKIRLVNDLEDQPRGYAFIEYEREEDMHMAYKKADGRKVDSRRLLVDVERGRTVRNWRPRRFGGGLGESRKTKPKKGEE 221
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: A0A7S2Y0A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A0_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.950e-60
Identity = 109/197 (55.33%), Postives = 137/197 (69.54%), Query Frame = 1 
Query:    4 MQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPKEDPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKER 594
            ++ MF P PP+E K  I KRK P + G+A+ +          LFE+      + +ETP+QR +R+  A  KA+ E L      ++P  +P A  DAYKTLFIS++SYDTTEKKLRREFEQYGPI +LR++ D + KPRGYAF+EY+ E DMR+AYKR DG KIDGRRV VDVERGRTVR W PRR GGGLG +RK +
Sbjct:   28 LKAMFDPRPPMEHKPPIIKRKMPSLAGMASYVD---------LFEKTEPPPRQIYETPKQRQARVRDATMKANNEALALYAQEFDPHLNPHATEDAYKTLFISRLSYDTTEKKLRREFEQYGPIRNLRIILDLNDKPRGYAFIEYDRESDMRMAYKRADGCKIDGRRVLVDVERGRTVRGWCPRRLGGGLGGTRKSK 215
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: F0XZV6_AURAN (RRM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZV6_AURAN)

HSP 1 Score: 197 bits (501), Expect = 2.480e-59
Identity = 113/216 (52.31%), Postives = 138/216 (63.89%), Query Frame = 1 
Query:    1 AMQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPKEDPKA-----KGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDED---------------GKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 588
            AM+ MF P PPL F+  I KR+     G+AA            LFE       EK ETPR+R +++ A K +A +  L   +AAW+P++ P A      GDAYKTLF++++SYDTTEKKLRREFEQ+G I +LR+V + D               G PRGYAFVE+E E DMR AYKR DGRKIDGRRV VDVERGRTVRNW PR+ GGGLG +RK
Sbjct:    4 AMKAMFQPGPPLLFREKISKRRPTPYTGVAAYRD---------LFETTAPPEPEKNETPRERRAKVKAEKAEAHDARLATAVAAWDPQKPPDAVAPLTTGDAYKTLFVARLSYDTTEKKLRREFEQFGAIKALRVVHERDPDHEPMEGDDDALHAGTPRGYAFVEFERESDMRDAYKRADGRKIDGRRVLVDVERGRTVRNWRPRKLGGGLGSTRK 210
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.370e-56
Identity = 103/193 (53.37%), Postives = 130/193 (67.36%), Query Frame = 1 
Query:   13 MFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPK-EDPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 588
            MF P  PL+    + KRK P   G+AA L A         FE          ETP++R  R    K  A E  ++E  A W+P  EDP+   DAYKTLF+ +ISY+TTE++LR EFEQYGP+ S+R+V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:   35 MFEPNAPLDHLPRLVKRKMPPYTGLAAFLDA---------FESETPPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: W7TPI8_9STRA (U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPI8_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.620e-56
Identity = 102/195 (52.31%), Postives = 132/195 (67.69%), Query Frame = 1 
Query:    4 MQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPKEDPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 588
            M+ MF P PP+EF R   K       GI+  +          LFE       E+F + ++R +   AA  K   E ++ ++  W+PK+D KA  D YKTL ++++SYDTTEKKLRREFEQYGPI S+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+ VDVERGRTV+ W+PRR GGGLG +RK
Sbjct:    1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVG---------LFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 186
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: A0A6A3TRP9_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TRP9_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.750e-56
Identity = 103/193 (53.37%), Postives = 130/193 (67.36%), Query Frame = 1 
Query:   13 MFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPK-EDPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 588
            MF P  PL+    + KRK P   G+AA L A         FE          ETP++R  R    K  A E  ++E  A W+P  EDP+   DAYKTLF+ +ISY+TTE++LR EFEQYGP+ S+R+V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:   35 MFEPNAPLDHLPRLVKRKMPPYTGLAAFLDA---------FESETPPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218
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BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL)

HSP 1 Score: 193 bits (490), Expect = 2.900e-56
Identity = 99/199 (49.75%), Postives = 133/199 (66.83%), Query Frame = 1 
Query:    4 MQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPKE-DPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 597
            ++ +F P PPLE    + KRK P   G+    +          FE       E  ETP++R  R+   K +A E  L+  +  W+P+  D +   DAYKTLF+ +ISY+TTEK+LR+EFEQYGP+  +R+++DE+GK RGYAFVEYE E DM++AYK+ DG+KIDGRRV VDVERGRTVR W PR+FGGG+G++RK  P
Sbjct:   29 LKALFEPNPPLEHLPQLTKRKMPPYSGLTEFAET---------FETAQPPPREVSETPKERRERVRKEKVEAHEAQLQANLEKWDPQAADERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLIEDEEGKSRGYAFVEYEKESDMKVAYKQADGKKIDGRRVVVDVERGRTVREWKPRKFGGGIGETRKGGP 218
[Close]
BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: K3X2C0_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2C0_GLOUD)

HSP 1 Score: 192 bits (487), Expect = 7.490e-56
Identity = 100/196 (51.02%), Postives = 136/196 (69.39%), Query Frame = 1 
Query:    4 MQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPK-EDPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 588
            ++ +F P  PLEFK  + KRK P  +GIA+ L        + +  E P       ETP++R  R+ A +   ++  ++     W+P  ED +   DAYKTLF+ +ISY+TTEK+LR+EFEQYGP+  +R+V+DE+GK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:   31 LKALFEPNAPLEFKPKLVKRKMPPYEGIASFL--------DQMETEAPPSRVVS-ETPKERKERLRAERMARNDAEMQANREKWDPNAEDARKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKVRLVEDEEGKSRGYGFVEYENESDLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 217
[Close]
BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Match: A0A5D6XVV7_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVV7_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.730e-55
Identity = 106/200 (53.00%), Postives = 136/200 (68.00%), Query Frame = 1 
Query:    4 MQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPXXXXEKFETPRQRHSRIAAAKK-KADEEGLKEKIAAWNPKE-DPKAKGDAYKTLFISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDDMRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 597
            ++ +F P  PLEF+  + KRK P   GIAA  +  +A+   P          E  ETP++R  R+ A +  KAD E L  K   W+P   D +   DAYKTLF+ +ISY+TTEK+LR+EFEQYGP+   R+V+D DGK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK  P
Sbjct:   38 LKALFEPNAPLEFRPKLVKRKMPPYSGIAAFAEQFEAEAPPPR---------EVSETPKERRERVRAERMAKADAEMLANK-EKWDPNAPDERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKRARLVEDPDGKSRGYGFVEYENESDLKAAYKLADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRKGGP 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11121.1008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P6_ECTSI7.650e-11682.30RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
H6WBA2_VAULI5.550e-6855.67RRM domain-containing protein n=1 Tax=Vaucheria li... [more]
A0A7S2Y0A0_9STRA2.950e-6055.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0XZV6_AURAN2.480e-5952.31RRM domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A6G0M502_9STRA2.370e-5653.37RRM domain-containing protein n=1 Tax=Phytophthora... [more]
W7TPI8_9STRA2.620e-5652.31U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nann... [more]
A0A6A3TRP9_9STRA2.750e-5653.37RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A8K1CMI4_PYTOL2.900e-5649.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X2C0_GLOUD7.490e-5651.02RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A5D6XVV7_9STRA1.730e-5553.00RRM domain-containing protein n=1 Tax=Pythium bras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11121contigL-elsbetiae_contig11121:1868..6302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.1
Seed ortholog evalue9.6e-94
Seed eggNOG ortholog2880.D7G2P6
KEGG koko:K11093
KEGG Pathwayko03040,map03040
KEGG ModuleM00351
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0018130,GO:0019438,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071920,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.snRNA binding
EggNOG OGsCOG0724@1,KOG0113@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-11_002990.1
Exons5
Model size867
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11121.1008.1prot_L-elsbetiae_contig11121.1008.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11121 1868..6299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.5833278-CDS-L-elsbetiae_contig11121:1867..19221622815326.5833278-CDS-L-elsbetiae_contig11121:1867..1922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 1868..1922 -
1691682840.7407503-CDS-L-elsbetiae_contig11121:1867..19221691682840.7407503-CDS-L-elsbetiae_contig11121:1867..1922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 1868..1922 -
1622815326.5967503-CDS-L-elsbetiae_contig11121:2800..30631622815326.5967503-CDS-L-elsbetiae_contig11121:2800..3063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 2801..3063 -
1691682840.754438-CDS-L-elsbetiae_contig11121:2800..30631691682840.754438-CDS-L-elsbetiae_contig11121:2800..3063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 2801..3063 -
1622815326.6103983-CDS-L-elsbetiae_contig11121:3664..37941622815326.6103983-CDS-L-elsbetiae_contig11121:3664..3794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 3665..3794 -
1691682840.7633018-CDS-L-elsbetiae_contig11121:3664..37941691682840.7633018-CDS-L-elsbetiae_contig11121:3664..3794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 3665..3794 -
1622815326.6240957-CDS-L-elsbetiae_contig11121:4216..44191622815326.6240957-CDS-L-elsbetiae_contig11121:4216..4419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 4217..4419 -
1691682840.7717905-CDS-L-elsbetiae_contig11121:4216..44191691682840.7717905-CDS-L-elsbetiae_contig11121:4216..4419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 4217..4419 -
1622815326.636912-CDS-L-elsbetiae_contig11121:6086..62991622815326.636912-CDS-L-elsbetiae_contig11121:6086..6299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 6087..6299 -
1691682840.7810376-CDS-L-elsbetiae_contig11121:6086..62991691682840.7810376-CDS-L-elsbetiae_contig11121:6086..6299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11121 6087..6299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.6505854-UTR-L-elsbetiae_contig11121:6299..63021622815326.6505854-UTR-L-elsbetiae_contig11121:6299..6302Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11121 6300..6302 -
1691682840.7889733-UTR-L-elsbetiae_contig11121:6299..63021691682840.7889733-UTR-L-elsbetiae_contig11121:6299..6302Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11121 6300..6302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11121.1008.1

>prot_L-elsbetiae_contig11121.1008.1 ID=prot_L-elsbetiae_contig11121.1008.1|Name=mRNA_L-elsbetiae_contig11121.1008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=288bp
MQDMFAPPPPLEFKRSICKRKTPEVQGIAAMLKASKAKGGEPLFEEGPPP
PPEKFETPRQRHSRIAAAKKKADEEGLKEKIAAWNPKEDPKAKGDAYKTL
FISKISYDTTEKKLRREFEQYGPISSLRMVQDEDGKPRGYAFVEYENEDD
MRLAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKK
GHEAEWRERERQEAEAKEAEREAKREKERQEERARRDKEREEREKSRGPD
DKDKDDSGGGKRSDSRERGRRGGSRDRSRSRDGSRDR*
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mRNA from alignment at L-elsbetiae_contig11121:1868..6302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11121.1008.1 ID=mRNA_L-elsbetiae_contig11121.1008.1|Name=mRNA_L-elsbetiae_contig11121.1008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4435bp|location=Sequence derived from alignment at L-elsbetiae_contig11121:1868..6302- (Laminarionema elsbetiae ELsaHSoW15)
GCCATGCAAGACATGTTCGCCCCCCCGCCCCCGTTGGAGTTCAAGCGGAG
CATCTGCAAGAGAAAGACGCCCGAAGTCCAGGGGATAGCGGCCATGCTCA
AGGCCAGCAAGGCCAAGGGCGGGGAGCCCCTCTTCGAGGAGGGCCCGCCC
CCGCCGCCCGAGAAGTTCGAGACCCCCAGGCAGCGGCACTCCAGGATCGC
GGCTGCGAAGAAAAAGGTGAGACTTGTTTTTAATTAATGCACGTTTCTAC
ATAGATCACAGATGTCAGCCGTCTACGCCCCGTCTGTGAAAAAGTCGTTC
CAGGGGGACTGGTGTAGGCATACCGACCCCCCCTCTCCGTCCAAGCTATT
TATCGTATACTCGCACAAAATTCCGTCATGCGTATTTTTTGAATTGTTGT
TTTGTGGTTTTCAGCAATTCGATTCGATTTGATTCGATTCGTGCGTGCAT
TGTGAACACGTGATAAAAGAGTGAACGTTTATCTATCCACTGCGCGGAAT
GCGGGTGTGTTTCACGAGACTCTCTAACCCTTTCCATGGATGGTGGCTGC
AACTCAGTTGCGCGCACCATCAGCTAGGATGCAGCCGCTTTGCGAGCAGA
TCCTGTGGGGGCGCTTCTGTTTCCGAGCGCTGGCCGAACCTGCCCAGGCC
GCTCAACGGTCACGACGGTTACGCCGCGGGCACAAACATCCACGCTCTCG
CCTTACCGCACCCCCTGGACCGAGTTTCAGAGCTCCAATCCTCCGTAACG
AAGAAGGTATCAGCACCAAACGCCACATTTTCGGACAGCCCTCGACTAGA
TATTTCCAACGCCACCCCCCCTTTTCGGCACGACACTCTTCCTGCTGGGG
AGGAACCGAGCTTTGAAAATCTGTCTAGGGGGTGTGGTATCTCGTGTCAC
CTACGGTACGCGCGAATTTTCTGGACGCTCTCGAGGGCGTCCTTCCCCAC
CGTTTCGAGGAACGCCTTCGTCTCACACACCAGAAACGCCGCCGCCGTGC
ATCTTTGCGTATCTCGGGCACATTTTTGTACTGGCGGGAGAGTAGGTTCT
CGTTTCAAGGTTGGAGCAGTTTTGGATCCCAGATATGACGGTCACATCAG
CGAGCACCCAAAGTGACCTCTCTTCACAGAAGGCTACAAAATCACGCACC
ATGAATCTACCTCCAATTATATTGATTTTTTCCCCGAAAGTCTCCCCGGT
TTGAGCTTTTATCGCTGCGGGGGCAGCCGAAAACGCGCCCTGAAAAGTAT
TGCGATGGTGCCAGGCTGTAGACAGCTTCTTTGGGTTTCTTTTAAAGGTT
GGAGGAATTTTGGATCTCAACTACATCGGGAGCTATTGTGGAATGTCTGC
CCAGCCCTATATGGCGAAGCGGGCCAGCGGGGGCTCCGAAATTTCGGTGG
CCGTGAACGGAAATTACAAAAAAGCGCGTTACGGGCCTCCCTGCAACCCG
GGTGGTACATGAATAAACGCGAAACTCGAGCACGCCCCCCCCCCCAACTC
TGGAAAATACAACCACGTCGCAGCCCAAGATGCTGCATACACACACGAAG
GATATGTTGTCGAAGCGCCTTTTCAGTGCTACATGAGCGCTTCAAAAAAA
GAGAAGAAAACTCGAAACCCGCGTGAGAGGAAAACACATCGCCCAATAAC
ACACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCGGGCGCGGCGGGAGGGGCGGAGGGGGAAGAGGCCGC
CCCGGGACNNNNNNNNNNGGAGGACCCCCCCCCCCCCCGGTGCGGGCAAA
CCACCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCGTCTGCCGCCCC
CCCCTGCCGCGCCCCCTGCCGCGCGCATCGCAGGCAGACGAGGAAGGGCT
GAAGGAGAAGATCGCTGCCTGGAACCCCAAGGAAGACCCCAAGGCAAAGG
GCGACGCGTACAAGACGCTCTTCATCTCTAAGATCAGCTACGACACCACC
GAGAAGAAGCTGCGCAGGGAGTTCGAGCAGTACGGGCCCATCAGCTCGCT
CCGCATGGTGCAGGACGAGGACGGCAAGCCCCGGGGGTGAGTTGAGGGGG
GGCAACGGAGGGGGTTGCCGTGGCGCAGAGGCCGAGGCAGAGATCAAGAG
ATTTAAGCTACATTTTGATGAAGGCACAACGGGGCGCTGTGTATGCCGAA
CCCCAGCAAACGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTC
TCCCTTATCTCGCTCTCCGTCTTTGCGGCCGAGTGTAGTCTATCTACTTC
CCTTCCGGTCCCTTCTTTTCTTTGTGGCCGTCGTGATGGAAGGATACAAT
GCACTGTAGGTGTGTGGGTGTGTGGGTGTGTGTCCGTCTCCCCCCCTCTC
TCTCTCTCTCTTTCTGTGTGTGTGTTGTCTGTCTGTCTGTCTGTCTGCTT
CTGTGTGCGTTGGTTTTCGAAAAACATGCTACCATCGGTCGCATCGCGCA
CCACGCAGGTACGCCTTCGTGGAGTATGAGAACGAGGACGACATGCGGCT
CGCCTACAAGAGGGGGGACGGCCGCAAGATCGACGGCCGCAGGGTCACCG
TGGATGTCGAGCGCGGCCGCACCGTGCGCAACTGGCTGGTGAGTCAGGGA
GGCACCCCCCGCCCTTTGGCAGTCGAGCATGAGTCTGTGTTTGCTTCGTC
GGTGTTGTTTCTGTTGTGGTGGGCCTGCACATGGAATACCTGTTCCAGCT
TTGTTTGCAGCAGACTTGCCCAAACATCCTCCGCGCTGCATTGGTCTAAA
CACGCAGGTCTTGGGAGTTTGTAGGCTGTTTTGTAACGCTGGTACCGGGG
GATTCGCTTCTCAGCTGCACGCACGTTTTTTTCTCGCCGCCGTTTTTGTG
GTCTTGCCGTTTCTTGTTTCCCTTCTCCGTGAGCGGAGCGACTGGCTTGC
TCTGATTTGCCGGGACAGGATTGTGAACGTAGGACTGAGACACTACTGTG
TTCGGGTGAGTAGGAGAGTAGGCGCACGAAGCATCTGCAAGCGAAGCGGG
TTGCACTTTCCCTCCGTCAAATCTCCCTCCTTCTCTCTCTCGTCTTCTCC
CCCCCCCCCCCCACCCCAACCACATCCGTTTCCCCCACCCCCCCTCTGAC
CCGCCTCTATTGTAGCTAAAAAACCCAACTCGGCCTTAGTGGTGCACGTG
CATAACGCCTCCTACCTTGTCCCGCATTCATTCACGCAGCCCCGGCGCTT
CGGCGGCGGGCTCGGAGACTCCCGCAAGGAGCGCCCCAAGAAGGGCCACG
AGGCGGAGTGGCGCGAGCGCGAGCGCCAGGAGGCCGAGGCCAAGGAGGCC
GAGCGAGAGGCGAAGCGCGAGAAGGAGCGGCAGGAGGAGCGGGCCCGCAG
GGACAAGGAGAGGGAGGAGAGGGAGAAGAGCCGAGGGCCGGACGACAAGG
ACAAGGATGACAGCGGCGGTGGCAAGAGATCCGACAGTAGGGAGCGCGGA
AGGTGCGCCTGGGCGTGTTTTTGCTTTGCTTTTGTTTCGTTTTTTCTCTT
TTAAGTAAAAGCAGTGTCCGAGGGACATTTTGTCAGAATTCTGACCCGTG
TGTCACACAGCAGGGTTCCTCTATCTGCGCGCCCCCCAACCACCGCCCTT
TCTGCGGTGATGGCCTTCGAGTTTTAACGCGAAAAGAGTCCGGGAGTATG
TATCATATTTTGCGTCCATTGGTCACACCTAGTCCCGCTGTCCAACTGTT
CGACAACAACAGCACTTGGCAGTGAAGGAGGAGAAAAAGATACTTCACAT
TGCCTTAGATTTCCTTTACAGCGCGCAGTTGGGAAGGCCATAGGTGATCG
AAGGCACTGTGTGCTGAACAAAATTCACTACATTTCTTCTTTAGGCCGCT
CGACCGCATGCGCATGCATGGTGCGCTTAGTTCAAGTAGTTTTGGTTTTG
AGCAAGGGGAATGTTTTTGCACATCTCTTGAGCTGTTTGGCTTGCCGTTG
GCGATGCCACAATTTCGAGCGTCAGTTGTTGCTGTCATGGAGTCTTGTCA
CCGTGTCGACCTCACAAGATGCATCGGGACTTTTACCTTTGCGTTGTTGC
CACTAACATCGCCTGTCGGCCACGGAATGGGGTGCCGATGCCGTCTTACC
TTTTTGTCTTGCGTGCTGCTTTCACGCCGGGTGTCGAGGTTGGATTTGCT
AGTCAGAACTAACCGACTGCTGCTTCTGACTACGCGCAAGTTTCGATCGA
TTTGCCTATTTCGTTTCGCTTATATGTATTGGTCTACCGCCGCCACCGTT
GCTGGTGCCGCTGCTGCTGCGGCCGTTCTTGCCTGTCTTGCAACTGATGT
TGTCTTTGGTGTCTCGTTATTGTGATACAGACGGGGCGGGAGCCGGGACC
GAAGCCGGAGCAGGGACGGAAGCAGGGACAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11121:1868..6302-

>mRNA_L-elsbetiae_contig11121.1008.1 ID=mRNA_L-elsbetiae_contig11121.1008.1|Name=mRNA_L-elsbetiae_contig11121.1008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1728bp|location=Sequence derived from alignment at L-elsbetiae_contig11121:1868..6302- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGACATGTTCGCCCCCCCGCCCCCGTTGGAGTTCAAGCGGAGCAT
CTGCAAGAGAAAGACGCCCGAAGTCCAGGGGATAGCGGCCATGCTCAAGG
CCAGCAAGGCCAAGGGCGGGGAGCCCCTCTTCGAGGAGGGCCCGCCCCCG
CCGCCCGAGAAGTTCGAGACCCCCAGGCAGCGGCACTCCAGGATCGCGGC
TGCGAAGAAAAAGATGCAAGACATGTTCGCCCCCCCGCCCCCGTTGGAGT
TCAAGCGGAGCATCTGCAAGAGAAAGACGCCCGAAGTCCAGGGGATAGCG
GCCATGCTCAAGGCCAGCAAGGCCAAGGGCGGGGAGCCCCTCTTCGAGGA
GGGCCCGCCCCCGCCGCCCGAGAAGTTCGAGACCCCCAGGCAGCGGCACT
CCAGGATCGCGGCTGCGAAGAAAAAGGCAGACGAGGAAGGGCTGAAGGAG
AAGATCGCTGCCTGGAACCCCAAGGAAGACCCCAAGGCAAAGGGCGACGC
GTACAAGACGCTCTTCATCTCTAAGATCAGCTACGACACCACCGAGAAGA
AGCTGCGCAGGGAGTTCGAGCAGTACGGGCCCATCAGCTCGCTCCGCATG
GTGCAGGACGAGGACGGCAAGCCCCGGGGGCAGACGAGGAAGGGCTGAAG
GAGAAGATCGCTGCCTGGAACCCCAAGGAAGACCCCAAGGCAAAGGGCGA
CGCGTACAAGACGCTCTTCATCTCTAAGATCAGCTACGACACCACCGAGA
AGAAGCTGCGCAGGGAGTTCGAGCAGTACGGGCCCATCAGCTCGCTCCGC
ATGGTGCAGGACGAGGACGGCAAGCCCCGGGGGTACGCCTTCGTGGAGTA
TGAGAACGAGGACGACATGCGGCTCGCCTACAAGAGGGGGGACGGCCGCA
AGATCGACGGCCGCAGGGTCACCGTGGATGTCGAGCGCGGCCGCACCGTG
CGCAACTGGCTGGTACGCCTTCGTGGAGTATGAGAACGAGGACGACATGC
GGCTCGCCTACAAGAGGGGGGACGGCCGCAAGATCGACGGCCGCAGGGTC
ACCGTGGATGTCGAGCGCGGCCGCACCGTGCGCAACTGGCTGCCCCGGCG
CTTCGGCGGCGGGCTCGGAGACTCCCGCAAGGAGCGCCCCAAGAAGGGCC
ACGAGGCGGAGTGGCGCGAGCGCGAGCGCCAGGAGGCCGAGGCCAAGGAG
GCCGAGCGAGAGGCGAAGCGCGAGAAGGAGCGGCAGGAGGAGCGGGCCCG
CAGGGACAAGGAGAGGGAGGAGAGGGAGAAGAGCCGAGGGCCGGACGACA
AGGACAAGGATGACAGCGGCGGTGGCAAGAGATCCGACAGTAGGGAGCGC
GGAAGCCCCGGCGCTTCGGCGGCGGGCTCGGAGACTCCCGCAAGGAGCGC
CCCAAGAAGGGCCACGAGGCGGAGTGGCGCGAGCGCGAGCGCCAGGAGGC
CGAGGCCAAGGAGGCCGAGCGAGAGGCGAAGCGCGAGAAGGAGCGGCAGG
AGGAGCGGGCCCGCAGGGACAAGGAGAGGGAGGAGAGGGAGAAGAGCCGA
GGGCCGGACGACAAGGACAAGGATGACAGCGGCGGTGGCAAGAGATCCGA
CAGTAGGGAGCGCGGAAGACGGGGCGGGAGCCGGGACCGAAGCCGGAGCA
GGGACGGAAGCAGGGACAGGTAAACGGGGCGGGAGCCGGGACCGAAGCCG
GAGCAGGGACGGAAGCAGGGACAGGTAA
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