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Homology
BLAST of mRNA_L-elsbetiae_contig11120.1007.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 189 bits (479), Expect = 3.130e-49 Identity = 108/324 (33.33%), Postives = 169/324 (52.16%), Query Frame = 3
Query: 3 PKSGTGLMYEMATGAIAHACMFLQRAYGEQSCRIEWH-YFNRT------------------MIFEPSR-----AAHAPG--PCACDDVDLVTLTLTDVDKHSLPVAESCAYSYVKGIATDQSPCPPTYGKPEPVDQPGISRCVRESACPIVDHRLQMSVNRDPRPIAVSAYFHIRR-----WQPERFTNITVDEFVLQVLPNACKWVFVRYLLFAEMMAQTSSMFWYDDSLNRTVDWHKQFYDFTGLNVPNAVISRAADVAAGRANDSRLAVFPHKGVDEHLGGRSPATGRSYRDEVLPETAARMDEILRFWLPPVLQERFGVG 881
PKSGT M+E A A+ C L R YGE +C W +F+R +F+P+R +A P PC C VD V++ ++ + KH LPV SC + +V + + C G+ + C+++ C IVD R+QM + RDPR +AVS++FH++ W+ T+ +VD FVL++LP C ++ +RYL+ E + + F YD+SL + WH+++ GL P V+ +A + + R F KGVD+H GG+ R++ DE+ + A +++ I R WLPPVL E+FG+G
Sbjct: 108 PKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGR-RVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWK--HLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYG-----FAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIG 423
BLAST of mRNA_L-elsbetiae_contig11120.1007.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.050e-33 Identity = 78/229 (34.06%), Postives = 125/229 (54.59%), Query Frame = 3
Query: 195 VTLTLTDVDKHSLPVAESCAYSYVKGIATDQSPCPPTYGKPEPVDQPGISRCVRESACPIVDHRLQMSVNRDPRPIAVSAYFH-IRRWQPERFTNITVDEFVLQVLPNACKWVFVRYLLFAEMMAQTSSMFWYDDSLNRTVDWHKQFYDFTGLNVPNAVISRAADVAAGRANDSRLAVFPHKGVDEHLGGRSPATGRSYRDEVLPETAARMDEILRFWLPPVLQERFGV 878
V ++++ VDKH LPV ESC +S+ G + C G P + C++++ C I D+RLQ RDPR +AVS YFH + + + + ++D+ VL++LP C + +R++LF +++ + +FWY+ ++ DWH ++ F GL +P I VA +A HK ++ H GG + R+++DEV P MD ILR WLP VL R+G+
Sbjct: 5 VEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGA-DLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGM--VAENQA---------HKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGI 221
BLAST of mRNA_L-elsbetiae_contig11120.1007.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.910e-20 Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 3
Query: 405 RDPRPIAVSAYFHIRR-----WQPERFTNITVDEFVLQVLPNACKWVFVRYLLFAEMMAQTSSMFWYDDSLNRTVDWHKQFYDFTGLNVPNAVISRA-ADVAAGRANDSRLAVFPHKGVDEHLGGRSPATGRSYRDEVLPETAARMDEILRFWLPPVLQERFGV 878
RDPR +AVS YF+I+R P R ++ DE V+ +LP C++ +R++LF ++ S +FWY+D++ + W+ ++ G +P I A + ND + + H GG+ ++ R++ DEV PET M+ ILR WLP VL RF V
Sbjct: 2 RDPRAVAVSTYFYIKRSPIHLHHPSRGKSL--DEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKR--------EPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDV 155
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 2276 |
| Cds size | 876 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815326.4844658-UTR-L-elsbetiae_contig11120:2609..3986 | 1622815326.4844658-UTR-L-elsbetiae_contig11120:2609..3986 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig11120 2610..3986 - |
| 1691682840.6848593-UTR-L-elsbetiae_contig11120:2609..3986 | 1691682840.6848593-UTR-L-elsbetiae_contig11120:2609..3986 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig11120 2610..3986 - |
| 1622815326.5448196-UTR-L-elsbetiae_contig11120:5435..5458 | 1622815326.5448196-UTR-L-elsbetiae_contig11120:5435..5458 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig11120 5436..5458 - |
| 1691682840.7305832-UTR-L-elsbetiae_contig11120:5435..5458 | 1691682840.7305832-UTR-L-elsbetiae_contig11120:5435..5458 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig11120 5436..5458 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815326.5001726-CDS-L-elsbetiae_contig11120:3986..4470 | 1622815326.5001726-CDS-L-elsbetiae_contig11120:3986..4470 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11120 3987..4470 - |
| 1691682840.6972811-CDS-L-elsbetiae_contig11120:3986..4470 | 1691682840.6972811-CDS-L-elsbetiae_contig11120:3986..4470 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11120 3987..4470 - |
| 1622815326.5192425-CDS-L-elsbetiae_contig11120:4670..4892 | 1622815326.5192425-CDS-L-elsbetiae_contig11120:4670..4892 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11120 4671..4892 - |
| 1691682840.7113488-CDS-L-elsbetiae_contig11120:4670..4892 | 1691682840.7113488-CDS-L-elsbetiae_contig11120:4670..4892 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11120 4671..4892 - |
| 1622815326.532547-CDS-L-elsbetiae_contig11120:5265..5435 | 1622815326.532547-CDS-L-elsbetiae_contig11120:5265..5435 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11120 5266..5435 - |
| 1691682840.7216437-CDS-L-elsbetiae_contig11120:5265..5435 | 1691682840.7216437-CDS-L-elsbetiae_contig11120:5265..5435 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11120 5266..5435 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11120.1007.1 >prot_L-elsbetiae_contig11120.1007.1 ID=prot_L-elsbetiae_contig11120.1007.1|Name=mRNA_L-elsbetiae_contig11120.1007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=292bp
MYEMATGAIAHACMFLQRAYGEQSCRIEWHYFNRTMIFEPSRAAHAPGPC
ACDDVDLVTLTLTDVDKHSLPVAESCAYSYVKGIATDQSPCPPTYGKPEP
VDQPGISRCVRESACPIVDHRLQMSVNRDPRPIAVSAYFHIRRWQPERFT
NITVDEFVLQVLPNACKWVFVRYLLFAEMMAQTSSMFWYDDSLNRTVDWH
KQFYDFTGLNVPNAVISRAADVAAGRANDSRLAVFPHKGVDEHLGGRSPA
TGRSYRDEVLPETAARMDEILRFWLPPVLQERFGVGILVDN* back to topmRNA from alignment at L-elsbetiae_contig11120:2610..5458- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig11120.1007.1 ID=mRNA_L-elsbetiae_contig11120.1007.1|Name=mRNA_L-elsbetiae_contig11120.1007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2849bp|location=Sequence derived from alignment at L-elsbetiae_contig11120:2610..5458- (Laminarionema elsbetiae ELsaHSoW15)
AGCCTAAGAGTGGCACCGGTCTCATGTACGAGATGGCCACCGGAGCAATC
GCCCACGCATGCATGTTCTTACAAAGGGCCTACGGAGAACAAAGCTGTCG
GATCGAATGGCATTACTTCAATCGAACCATGATCTTTGAGCCGAGCCGAG
CAGCTCATGCTCCAGGGCCGTGCGCATGCGACGACGTGGATTTGTGAGAC
CAACTGATTGATGCTGTAGCTTCCCAACCACGACGACGATCGTCGGTGGC
TAGTCATTTTTTGTTGTTGTACTGATAGGGTATATCGTGAAACGATACAC
TAAGCTCCTTCCGAGGCAGACTGCAGACCAGCGGAAGCCCTCTCAGTGCA
GACACAACATGCTGCTACCGTAAACCGTCTGATTGGCGATTGCGGGGGTT
AAAATGTAATGATGGAGGGACGGGGCATAGCGACATCCGAGTCCCGCTGC
ATGCATTCTGATATGTATTTATATATTCTGGCCAAGATCTCAATAAATAA
CGATGTGCTTGTCCTTACCCCAACCCTGCCCCTAACTCTATGTAAATACT
CTGAAATTTCTCGCAGGGTGACACTCACGTTAACCGACGTGGACAAACAC
TCTCTGCCGGTTGCGGAGAGCTGTGCCTACTCTTATGTAAAAGGAATCGC
CACAGACCAAAGCCCCTGCCCACCGACGTACGGCAAGCCCGAGCCAGTTG
ATCAACCCGGTATCTCCAGATGCGTTCGAGAATCCGCCTGTCCAATCGTT
GACCATCGCCTGCAGATGAGCGTAAATCGGGACCCCAGGTAAGAGAAACC
CTCGTTTCGTTCCGTTTCCCGCCGTTGTCCTGTATGTAATATTTGTTGTT
ATGAGAATATCTGGATGCTTCATTTCCTTCCAGTAGTCGCTTATCGAAGT
ACTCTGTACTTTTCTGACGTAAAATTTGCTTTGCATTTTTCTCCGTTCGC
CGCTTTTTGTCTGAACCAACACTCGTGATTTGCTGCAGACCAATCGCAGT
TTCGGCCTATTTCCACATACGACGGTGGCAGCCTGAGCGGTTCACAAACA
TCACCGTGGACGAGTTTGTCCTGCAGGTTTTGCCCAACGCGTGCAAGTGG
GTGTTTGTCAGATACTTATTGTTTGCAGAGATGATGGCGCAGACATCATC
GATGTTTTGGTACGACGACAGCCTAAACAGGACAGTGGACTGGCACAAAC
AGTTTTACGATTTCACTGGTCTAAACGTTCCAAACGCGGTCATCAGCAGA
GCAGCAGATGTCGCAGCTGGGCGTGCAAATGATTCTAGGCTCGCTGTTTT
TCCTCACAAGGGGGTTGATGAACACTTGGGGGGGCGGTCTCCGGCGACTG
GTCGCTCGTACAGAGATGAGGTCTTGCCGGAAACTGCGGCACGAATGGAC
GAAATTCTTCGATTCTGGCTCCCTCCCGTTTTACAAGAAAGATTCGGAGT
TGGCATATTGGTCGACAACTGAAAGCTGATGCCATGATTGACTCAGTTCT
CTATGGGACAGTTGAACTAACGACATGGATATATATGTATACGATGAATG
GTTTTTTATGGTCAGTCGTGGGGTTTAGACTATACTTGGGAAAAGTCTCA
TCATATTATCTTTTTTTTTTATTGCACAGCCTCGGCGATCGTGTGGTAAT
CTACATATGTAAGCATCCGCTGTTGTTGACGTTGAGTTCACCAGCCAAAA
CACAACGGCGTGGCATCTAAACGGCCGACACGATCTGGGTTGTTCCGTGT
GTTCTAGTTTTTCTTGCATTGGAATGCAATCTAACAGTTCATCAAATGTT
TGGATGGCCGGGCGCGTGCGAGGGGCCGACCTACGATGTTGTTGGTAGGA
TAAGGGGTTCGGAGTATCCACCTACTAAAAAAGGAGGCAGCTTGTTTTAG
AATGCATCATTAGTGGGAACACAATTTCCGGGTACATATTGGTCCAGCTT
GTTCACAGCTGCACGACGTGTTCTAAATATACTTGTGGGTTTACATAGTT
TCCCCTCGCCATTCGAAAAGTTTCCAGAATAAAATCTCGTCGCATCAATG
GTTTCTTCAAAGGTTCTTCAAAACGCGTTGTCAAGTTTTCTCGTCGCTCA
CGCAACCGACCGGGGGGCGTGAAATCGCGCCGGTGGACGTATGTGGGCCT
TGAGGTTATGCACCCCGAGTAGGGGGGAAATCGTTGGAAGAGCGGATGAG
GAGCGGCGGCGGTTTGAGTGCGAAGATCTACGAAATGCACACTGAGTGTG
TGGGGAAACAAATCTTGATGTTGGTTTAGAGGTTGGGGGCATACGTACAC
CTCGGTCCACACAACCAGCAAGTGCGACTTGAGTTCTGAACGTATTGTTC
TAACCAAGGGCTCCCAGCAACCCTCACTTGGTGCTACTGTTGTGTCCATC
AGCTGGACATGATCGCTGGGGAGACGAGCTTAAAGAATACGTTTTGAATG
ACGCAAATCACGAGAAGTCAAACCGCCTCTATTCAGCAAAAAATGAAGCA
TTTTGGCAGAGACGTGAGGTCGCCGCTCTCGAGTTCTTGGTCCATTGATC
ACGGATCGAAGGCAGCCCGGGCGGGATGTGGTCTCTGTTTCCCGTTCTGT
ATCGATGGAGCGTAGCTTAGTTACGCGTTCGCTCAATGGACAGAGAGAAG
CGTCGCACGTTGTGTCTAACGGTATATTGGCTATGTGTGGTGTGGCTGAG
CGATGACAACCGAGTCAGGCCAGCACTACTATCAGCAAGGGTTAGCTCGC
TGGTGTGTGCGTGTGAGCTTGTGGGTCGAAGATGGTTTGCTGGTGACTCT
TGCCAGGCTTTGTTGAATGATGGTAGACGATGAGAGTACCATATTGGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig11120:2610..5458- >mRNA_L-elsbetiae_contig11120.1007.1 ID=mRNA_L-elsbetiae_contig11120.1007.1|Name=mRNA_L-elsbetiae_contig11120.1007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1752bp|location=Sequence derived from alignment at L-elsbetiae_contig11120:2610..5458- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGAGATGGCCACCGGAGCAATCGCCCACGCATGCATGTTCTTACA
AAGGGCCTACGGAGAACAAAGCTGTCGGATCGAATGGCATTACTTCAATC
GAACCATGATCTTTGAGCCGAGCCGAGCAGCTCATGCTCCAGGGCCGTGC
GCATGCGACGACGTGGATTTATGTACGAGATGGCCACCGGAGCAATCGCC
CACGCATGCATGTTCTTACAAAGGGCCTACGGAGAACAAAGCTGTCGGAT
CGAATGGCATTACTTCAATCGAACCATGATCTTTGAGCCGAGCCGAGCAG
CTCATGCTCCAGGGCCGTGCGCATGCGACGACGTGGATTTGGTGACACTC
ACGTTAACCGACGTGGACAAACACTCTCTGCCGGTTGCGGAGAGCTGTGC
CTACTCTTATGTAAAAGGAATCGCCACAGACCAAAGCCCCTGCCCACCGA
CGTACGGCAAGCCCGAGCCAGTTGATCAACCCGGTATCTCCAGATGCGTT
CGAGAATCCGCCTGTCCAATCGTTGACCATCGCCTGCAGATGAGCGTAAA
TCGGGACCCCAGGGTGACACTCACGTTAACCGACGTGGACAAACACTCTC
TGCCGGTTGCGGAGAGCTGTGCCTACTCTTATGTAAAAGGAATCGCCACA
GACCAAAGCCCCTGCCCACCGACGTACGGCAAGCCCGAGCCAGTTGATCA
ACCCGGTATCTCCAGATGCGTTCGAGAATCCGCCTGTCCAATCGTTGACC
ATCGCCTGCAGATGAGCGTAAATCGGGACCCCAGACCAATCGCAGTTTCG
GCCTATTTCCACATACGACGGTGGCAGCCTGAGCGGTTCACAAACATCAC
CGTGGACGAGTTTGTCCTGCAGGTTTTGCCCAACGCGTGCAAGTGGGTGT
TTGTCAGATACTTATTGTTTGCAGAGATGATGGCGCAGACATCATCGATG
TTTTGGTACGACGACAGCCTAAACAGGACAGTGGACTGGCACAAACAGTT
TTACGATTTCACTGGTCTAAACGTTCCAAACGCGGTCATCAGCAGAGCAG
CAGATGTCGCAGCTGGGCGTGCAAATGATTCTAGGCTCGCTGTTTTTCCT
CACAAGGGGGTTGATGAACACTTGGGGGGGCGGTCTCCGGCGACTGGTCG
CTCGTACAGAGATGAGGTCTTGCCGGAAACTGCGGCACGAATGGACGAAA
TTCTTCGATTCTGGCTCCCTCCCGTTTTACAAGAAAGATTCGGAGTTGGC
ATATTGGTCGACAACTGAACCAATCGCAGTTTCGGCCTATTTCCACATAC
GACGGTGGCAGCCTGAGCGGTTCACAAACATCACCGTGGACGAGTTTGTC
CTGCAGGTTTTGCCCAACGCGTGCAAGTGGGTGTTTGTCAGATACTTATT
GTTTGCAGAGATGATGGCGCAGACATCATCGATGTTTTGGTACGACGACA
GCCTAAACAGGACAGTGGACTGGCACAAACAGTTTTACGATTTCACTGGT
CTAAACGTTCCAAACGCGGTCATCAGCAGAGCAGCAGATGTCGCAGCTGG
GCGTGCAAATGATTCTAGGCTCGCTGTTTTTCCTCACAAGGGGGTTGATG
AACACTTGGGGGGGCGGTCTCCGGCGACTGGTCGCTCGTACAGAGATGAG
GTCTTGCCGGAAACTGCGGCACGAATGGACGAAATTCTTCGATTCTGGCT
CCCTCCCGTTTTACAAGAAAGATTCGGAGTTGGCATATTGGTCGACAACT
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