mRNA_L-elsbetiae_contig1112.1005.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1112.1005.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI) HSP 1 Score: 1173 bits (3035), Expect = 0.000e+0 Identity = 763/1383 (55.17%), Postives = 928/1383 (67.10%), Query Frame = 3 Query: 693 RRDAWTAD-AGCLGSRRLCFRSQPIQDLVSSTLLSIDPSGVFSMYEEWSSIKNRVLSRGLDEQRSDLALYEELRQLGQKEDDGDDSWISEDNARANSTTEHI-------FPERPSPPGRPAAVCFDQRVYALRPPCRRVGFLDISTVLCGLSEQRRRRPRKEPPLSSRNERAVNLDYARNLDKEPGLPPLRLLRESSEGALRLAHMALGDPHVMALLASLDHLPSLTSIDVSDNRIGSTAIQKVVLTAEEKGVASLDLSSNHIDRASTDMLCAFLARPASLSSLIVKNAGVSDLAGAAMMTAIGKNTILKTLDLSGNDIGGTSDLLVTHHHERGASMPRGVGGVVGYEAGGVRAGITGRLTGGAAIATCLESNYWLTHLDLSWNKARRRLNFIGESNASTIGASIEYNQGLRWLSLAGNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNIQVDVSTSTSQILANGPSHTRSFSRRATEQGAA*RRSIELVRPSPSAPALQPRGT-ATTTKGSDHLTLD-HITFGARTWSDLRTSLEDLLVRAPGDSEPWRLPSKGRISGAVDFQPLPPCMANMCNASGLKGIIEAMSACGDTRVAAFRLFVADLFFTTTQIQWVIEQLAGRPNPLNSAELLEMMAAVAPQVYNNEGLPDLIETNLSPMGRRMLVAQLGEAYPAFIGGVSGPFVLDLRFSAHRLAAVRLAEAENFQQRTPWMRRRKGREEMRTTWRAVR---IWMTATNLTCRTCWGFGVASGLSDRPTGVLQLDFVCTVRPPEGTQPISDLALARMLNSCGMLDPNFWHEYLRPTSFPISFVDLIRLLRVRGRGDKRQAKLLVLLLRVKNSIIRAARAEKKLKGIRVMR--RHRMGYAFTAFDKAATRNPNATLAAGAITGAAGA----AALPPGAAHTGVVSTTTTPSARNRKPNALGSRGKVSTINRVVKSFPRHSNGRAEEYAAGAGAAAVPTSPTGLQQATEVAQ--QQALTPTQAAVAAADSKLEGLLSGGGILRAK-SGWERPHGFPQSTPVWDRSCGRVGGDRSGLGGGVCVSGGGCVVDGGLDGTAPEDMGNAVMEWASRFCENEAG-FPAADSQEGLRLGRMLARHVVRDGDAGLIGTRPPTLLVHGLCIRVKHRETGGILRVKQSSVIDGMVQDKPVHHKDEWAAVSRQGIRGSHLRIGTKKEVTAALAATFVSRVQQRDLASS-----ITPRTLGTLNMTDDEDWRETFVPMELLASN--TLGGPLPLRLLVVNTSSEPALCRSLAQLRSRLGSCWLSSAQAATVASLVPRVLGGNHHRVDAVVSLFSRVVDLHNFRQVVGILHEKKRPQLLHQLGDLDAFYPTTT-PPAPATTLTSAPVFP 4748 RRD TAD A CLG RRLCFRS+PI DL +TL +IDP+G++ MY+EWS+IKNRVLSRG EQRSDLALY+ LR+ + + D+ S DNA S T + P SPP PAA D+ ++ P R G G++ +RRRR K+ A NLDYARNL KEPGLPPLRLLRESSEGALRLAHMALGD HVMAL++SLDHLP LTSID++DNRIGSTA++ V+ AE KGV LDLS NH+DR S +LC +L R + L SL+VK+ G+S LA AA+M A+ NT LKTL+LSGN++GGTSDL+ + V G G G RLTGGA++A L+SN LT+LDLSWNK IGE NA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KN QV +STS LAN P H FS+ AT QGAA +R+++LVRPSP A LQPRG +G L D + F AR++SD +T+L L VR G+ E W LP+KGR++G V+F PLPPCMA++CNA+GL+G++ AM+ C DTRV FRLFVADLF TT Q+QW+IEQLAG PN LNSAE+L+MMAAV+PQ+++N GLPDLIE NLSPMGR+ML QLG+AYPAF GGVSGPF+LDLRFS HRLAAVRLAEAENFQ R R R+ +E +T +A R I C T G GVASGL D+PTGVL+L+FVC RPPEGTQPISD LAR+LNSCGMLDP++W EY+RPTSFP+SFVDLIRLLRV+GRGDKRQAK+LVLLLRVKNS++RAAR + +G+ MR R+R+G A +A + P TLA+ ++ + + A P AA TG S+ T+P + G VS + S ++ R + A + G ++ +VA+ ++ LTP QAAV A D +L+GLL GGILR SG E GFP+ TPVW+ CGRVGG G VVD ED+ M WA +FCE++ G FP+ +S EG+ LG++LA+HVVRDGD GL+GT PPTLLVHGLCIRV+H E+ +LRVK+ G +D H+DEWA+V+RQG++G LRIGTKKEV +ALAATF +Q +LAS+ TPRTLGTL+MT D+ WRE FVP ELL S T GPL L LLVVNTS EP L +SLAQLR RLG WLSSAQAATVA++VPRVLGG H+RVD V LFSRVVDL N+RQV+ LHE+KRPQLL +LG+LDA P A A T T + P Sbjct: 74 RRDVRTADDANCLGHRRLCFRSEPIHDLHVATLKTIDPTGIYGMYQEWSNIKNRVLSRGFAEQRSDLALYDRLRKEAEDDKASSDNDASIDNAVVASGTNSMEEAYRTRSPSSVSPP--PAAEAIDEN-ESIPPEVVRDGN--------GIAARRRRRRLKDAHSFEPEGHAANLDYARNLHKEPGLPPLRLLRESSEGALRLAHMALGDRHVMALMSSLDHLPGLTSIDIADNRIGSTAMRTVLAIAEAKGVLHLDLSLNHVDRVSAGLLCKYLTRSSGLVSLLVKSCGMSALASAAIMVAVATNTTLKTLNLSGNNMGGTSDLIASXXXXXXXXXXXXXXXVGGS---GGEVGGADRLTGGASVALALDSNNSLTYLDLSWNK-------IGEINAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKNFQVGLSTSIYSTLANEPRHRIYFSQGATSQGAALQRNLQLVRPSPDAAVLQPRGIIVNAAEGEGSLQGDVPLEFCARSYSDQQTTLAALSVRVHGEHEAWPLPTKGRLTGLVEFIPLPPCMASVCNATGLRGLLAAMNGCFDTRVEVFRLFVADLFMTTNQVQWLIEQLAGGPNVLNSAEMLKMMAAVSPQLFDNTGLPDLIERNLSPMGRKMLEVQLGQAYPAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQTRATVWRHRERTKESKTRSKARRRVLIEERVARSMCYTSCGNGVASGLRDKPTGVLELEFVCLSRPPEGTQPISDRRLARLLNSCGMLDPHYWSEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRAARVARPRQGLTGMRCVRYRVGGAASAIVGSTRSTP--TLASTVVSATSRSPKKTATCAPAAAATGHDSSVTSPEVGPASGKGDRADGGVSPPEHLDPSRRDETSVRTAAASGAADDSPDKDKHHGSEEQKQVARVTEEELTPVQAAVLAVDKRLKGLLEAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGXXXXXXXXXXXDVVD-------DEDVAGGAMGWARKFCESDDGRFPSDESGEGISLGKVLAKHVVRDGDVGLVGTSPPTLLVHGLCIRVRHAESNRVLRVKRHPPASGHGEDNAERHEDEWASVARQGVKGCRLRIGTKKEVASALAATFAGLTKQPNLASTSTSSAATPRTLGTLDMTTDKGWRELFVPPELLVSTAVTEAGPLQLTLLVVNTSPEPNLSQSLAQLRVRLGGSWLSSAQAATVAAVVPRVLGGVHYRVDVAVFLFSRVVDLENYRQVIETLHERKRPQLLLRLGNLDALCPVPALSSAAAATSTKSGTAP 1426
BLAST of mRNA_L-elsbetiae_contig1112.1005.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE) HSP 1 Score: 634 bits (1634), Expect = 3.980e-197 Identity = 553/1548 (35.72%), Postives = 705/1548 (45.54%), Query Frame = 3 Query: 693 RRDAWTAD-AGCLGSRRLCFRSQPIQDLVSSTLLSIDPSGVFSMYEEWSSIKNRVLSR---GLDEQRSDLALYEELRQLGQKEDDGDDSWISEDNARANSTTEHIFPERPSPPGRPAAVCFDQRVYALRPPCRRVGFLDISTVLCGLSEQRRRRPRKEPPLSSRNERAVNLDYARNLDKEPGLPPLRLLRESSEGALRLAHMALGDPHVMALLASLDHLPSLTSIDVSDNRIGSTAIQKVVLTAEEKGVASLDLSSNHIDRASTDMLCAFLARPASLSSLIVKNAGVSDLAGAAMMTAIGKNTILKTLDLSGNDIGGTSDLLVTHHHERGA-SMPRGVGGVVGYEAGGVRAGITGRLTGGAAIATCLESNYWLTHLDLSWNKARRRLNFIGESNASTIGASIEYNQGLRWLSLAGNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNIQ------------------VDVST-----------STSQILAN---------GPSHTR--SFSRRATEQGA------------A*RRSIELVRPSPSAPALQPRGTATT-TKGSDHLTLD-HITFGARTWSDLRTSLEDLLVRAPGDSEPWRLPSKGRISGAVDFQPLPPCMANMCNASGLKGIIEAMSACGDTRVAAFRLFVADLFFTTTQIQWVIEQLAGRPNPLNSAELLEMMAAVAPQVYNNEGLPDLIETNLSPMGRRMLVAQLGEAYPAFIGGVSGPFVLDLRFSAHRLAAVRLAEAENFQQRTPWMRRRK-----------------GREEMRTTWRAVRIWMTA----TNLTCRTCWGFG---------VASGLSDRPTGVLQLDFVCTVRPPEGTQPISDLALARMLNSCGMLDPNFW---------------------------------------------------------------------------------------HEYLRPTSFPISFVDLIRLLRVRGRGDKRQAKLLVLLLRVKNSIIRAARAEKK--------------------------------------------------------LKGIRVMRRHRMGYAFTAFDKAATRNPNATLAAGAITGAAGA----AALPPGAAHTGVVSTTTTPSARNRKPNALGSRGKVSTINRVVKSFPRHSN-GRAEEY----AAGAGAA---AVPTSPTGLQQATEVAQ--QQALTPTQAAVAAADSKLEGLLSGGGILRAK-SGWERPHGFPQSTPVWDRSCGRVGGDRSGLGGGVCVSGGGCVVDGGLDGTAPEDMGNAVMEWASRFCENEAG-FPAADSQEGLRLGRMLARHVVRDGDAGLIGTRPPTLLVHGLCIRVKHRETGGILRVKQSSVIDGMVQDKPVHHKDEWAAVSRQGIRGSHLRIGTKKEVTAALAATFVSRVQQRDLAS-SITPRTLGTLNMTDDEDWRETFVPMELLASNTLG--GPLPLRLLV--VNTSSE--PALCRSLAQLRS--RLGSC---WL---SSAQAATVASLVPRVLG 4547 R+D TAD A CL RRLCFRS+PI DL +TL +IDP+GV+ MY+EWS++KNRVLS G EQRSDLALY+ L KE + D + +D + AN+ A+ ++ Y R P S+ +LC +L R + L SL+VK+ G+S LA A +M A+ NT LKTL+LSGN++GGTSDL+ +H + GVGG G G+ RLTGGA++A L+SN LT+LDLSWNKA LRWLSLAGNR+ XXXXXXXX KN+Q VD+ T ST+ + A GP + S RA Q A R+++LVRPSP A LQPRG T+G L D + F AR++SD +T+L L VR G+ E W LP+KGR+ G V+F PLPPCMA++CNA+GL+G++ AM+ C D RV AFRLFVADLF TT Q LAG PN LNSAE+L++MAAV+PQ Y PAF GGVSGPF+LDLRFS HRLAAVRLAEAENFQ R R + G ++M + + ++T C GL D+PTGVL+LDFVC RPPEG QPISDL LAR+LNSCGMLDPN+W EY+RPTSFP+SFVDLIRLLRV+GRGDKRQAK+LVLLLRVKNS++R R + +G+ +RR R TA + +P TLA+ ++ + + A P AA TG S+ T+ P + GK ++ V S P HSN R +E AA +GAA G ++ +VA+ ++ LTP QAAV A D +L+ LL GGILR SG E GFP+ TPVW+ CGRVGG G GG VDG D ED M WA +F + G FP+ +S EG+ LG++LA+HVVRDGD GLIGT PPTLLVHGLCIRV+H E+ +LRVK+ G +D H+DEWAAV+RQG++G LRIGTK+EV +ALAATF + +L S + TPRTLGTL+MT D+ WRE FVP+EL AS + GPL L LLV V S++ P+ C ++ + G+ W+ + +AATVA++VPRVLG Sbjct: 74 RQDVRTADDANCLSHRRLCFRSEPIHDLHVATLRAIDPTGVYGMYQEWSNMKNRVLSGIAGGYAEQRSDLALYDRLH----KEAEDDRASSDDDASIANAVV--------------ASGTIMEQAYRTRSP-----------------------------------------------------------------------------------------------------------------------------------SSGLLCEYLTRSSGLFSLVVKSCGMSALASAEIMVAVATNTTLKTLNLSGNNMGGTSDLIASHXXXXXXXAASAGVGGSRG------EVGVADRLTGGASVALALDSNNSLTYLDLSWNKA------------------------LRWLSLAGNRLGDQGAFSLGGALGVNCXXXXXXXXFNGISCPGAAALGHGLRGNTAIKNLQALKSMMTAIVTKTGLTPGVDLMTLRPFVQSGRLMSTAPVAATPTPSSDNEGGPFDLDLCNASERAAAQDILFAGSYLTGCRLAEVRNLQLVRPSPDAAVLQPRGIFVNGTEGEGSLQGDVPLEFCARSYSDQQTTLAALSVRVDGEHEAWPLPTKGRLKGLVEFIPLPPCMASVCNATGLRGLLAAMNGCFDARVEAFRLFVADLFMTTNQ-------LAGGPNALNSAEMLKIMAAVSPQTY-----------------------------PAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQTRNVRYRPARAAAAASRAGEDEEVDGGGADDMSDEGASAVANKNSIGDENSVTAPACVAHNGLREPAAKFFQHGLRDKPTGVLELDFVCLSRPPEGMQPISDLRLARLLNSCGMLDPNYWGSSLYSVDVAQSSAVPLLVGVLHEKQSLQRSPEERGRLSPVFVDRSDGEEMSRTTRVQLQPITHQLLAKIPMPHSSNNRSPHQPLSRSEYMRPTSFPVSFVDLIRLLRVKGRGDKRQAKILVLLLRVKNSMLRVPRVARPRQGEESIPINPQPGRLEGGVIAKISPDVTSSSPCSTKPRQTTRPPTKTDQYQLILVAQGMTSIRRIRYRIGGTASAIVGSTSPTPTLASTVVSATSRSLKKTATSVPAAAATGHYSSVTS-------PEVGPASGKGDRVDGGV-SPPEHSNPSRRDETSVRTAAASGAADDSLAKDKHHGSEERKQVARAAEEELTPVQAAVMAVDKRLQDLLIAGGILRGTTSGRECLQGFPRGTPVWENHCGRVGGRDEGSGG--------RRVDGANDIVGDEDAAGGAMGWARKFFGVDDGRFPSDESGEGIALGKVLAKHVVRDGDVGLIGTSPPTLLVHGLCIRVRHGESNRVLRVKRRPPASGHGEDNAKRHQDEWAAVARQGVQGCRLRIGTKREVASALAATFAGLTTEPNLVSIAATPRTLGTLDMTTDKGWRELFVPLELSASTAVSEAGPLQLTLLVTFVEVSAQFLPSDCFVSSEFTTVDHQGTVTFEWVPLEETTEAATVAAVVPRVLG 1390
BLAST of mRNA_L-elsbetiae_contig1112.1005.1 vs. uniprot
Match: A0A1V9ZMY6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMY6_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 8.480e-9 Identity = 58/198 (29.29%), Postives = 87/198 (43.94%), Query Frame = 3 Query: 1242 LLRESSEGALRLAHMALGDPHVMALLASLDHLPSLTSIDVSDNRIGSTAIQKVVLTAEEK-GVASLDLSSNHIDRASTDMLCAFLARP-ASLSSLIVKNAGVSDLAGAAMMTAIGKNTILKTLDLSGNDIGGTSDLLVTHHHERGASMPRGVGGVVGYEAGGVRAGITGRLTGGAAIATCLESNYWLTHLDLSWNKAR 1829 L+R+ A + +LGD + A+L +P + I+V DNR+ TA+ +++ E K + L++S N I AS L ++ +L+ L + NA + D AA M+A N + L +S N IG +L V +TGG AI L N LTHLDL+WN R Sbjct: 368 LIRKHHTTAFDFSFQSLGDKFIKQFAAALRDVPFVEEINVCDNRLSDTALNRLLRALETKPNLMKLNISQNEIGPASAATLKQYIGSTLCTLTHLSICNADIDDHECAAFMSAFESNKSVNDLRMSRNRIGEAENLNVVQPD---------------------------LITGGEAIGGMLNVNLTLTHLDLAWNLLR 538
BLAST of mRNA_L-elsbetiae_contig1112.1005.1 vs. uniprot
Match: A0A6G0WLR8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLR8_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 7.250e-8 Identity = 63/226 (27.88%), Postives = 94/226 (41.59%), Query Frame = 3 Query: 1263 GALRLAHMALGDPHVMALLASLDHLP--SLTSIDVSDNRIGSTAIQKVV--LTAEEKGVASLDLSSNHIDRASTDMLCAFLARPA-SLSSLIVKNAGVSDLAGAAMMTAIGKNTILKTLDLSGNDIGGTSDLLVTHHHERGASMPRGVGGVVGYEAGGVRAGITGRLTGGAAIATCLESNYWLTHLDLSWNKARRRLNFIGESNASTIGASIEYNQGLRWLSLAGN 1925 G L L H LGD V + LD + SL ++ + DN + V+ +T + G+ LDLS N I L L P+ L SL++ + D+ ++TAI KNT L+TLDL+ N + T G A+A L S+ L H DLSWN R + A+T+ +++ N GL L+++ N Sbjct: 410 GQLNLNHFGLGDRGVQKMGQYLDQMSRRSLKTLLLHDNIVADKGCASVMHAITNSQHGLVCLDLSQNRIHANGAQALAEALQSPSCKLQSLLLAKNHLGDVVAKKLITAIAKNTTLRTLDLAENQL----------------------------------------TTCGHALAHLLRSHPRLRHFDLSWNLLRGK-------QATTVASAVGDNNGLELLNVSYN 588
BLAST of mRNA_L-elsbetiae_contig1112.1005.1 vs. uniprot
Match: K3WEV2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV2_GLOUD) HSP 1 Score: 62.0 bits (149), Expect = 1.190e-5 Identity = 59/187 (31.55%), Postives = 80/187 (42.78%), Query Frame = 3 Query: 1287 ALGDPHVMALLASL-DHLPSLTSIDVSDNRIGSTAIQKVVLTAEEKG----VASLDLSSNHIDRASTDMLCAFLARP-ASLSSLIVKNAGVSDLAGAAMMTAIGKNTILKTLDLSGNDIGGTSDLLVTHHHERGASMPRGVGGVVGYEAGGVRAGITGRLTGGAAIATCLESNYWLTHLDLSWNKAR 1829 +LGD + + +P + I V DNR+ + ++ E + LD+S N I S L A++A +L L V+NA + D AA MTA KN +K L +S N IG L V V+ T TGG AIA+ L+ N L HLDLSWN R Sbjct: 11 SLGDEFIFEFAKCIVQDIPFVEEILVRDNRLSDAGLNALLEAISEGSSMLNLHRLDISQNEIGEKSAHTLRAYVASSHCTLQILHVENADIDDRECAAFMTAFEKNLSIKHLWMSRNCIGKLEHLNV------------------------VQPDFT---TGGEAIASMLQKNLVLVHLDLSWNYLR 170 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1112.1005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1112.1005.1 >prot_L-elsbetiae_contig1112.1005.1 ID=prot_L-elsbetiae_contig1112.1005.1|Name=mRNA_L-elsbetiae_contig1112.1005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=784bp MANMCNASGLKGIIEAMSACGDTRVAAFRLFVADLFFTTTQIQWVIEQLAback to top mRNA from alignment at L-elsbetiae_contig1112:5800..25663+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1112.1005.1 ID=mRNA_L-elsbetiae_contig1112.1005.1|Name=mRNA_L-elsbetiae_contig1112.1005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=19864bp|location=Sequence derived from alignment at L-elsbetiae_contig1112:5800..25663+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1112:5800..25663+ >mRNA_L-elsbetiae_contig1112.1005.1 ID=mRNA_L-elsbetiae_contig1112.1005.1|Name=mRNA_L-elsbetiae_contig1112.1005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4704bp|location=Sequence derived from alignment at L-elsbetiae_contig1112:5800..25663+ (Laminarionema elsbetiae ELsaHSoW15)back to top |