mRNA_L-elsbetiae_contig11118.1003.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11118.1003.1
Unique NamemRNA_L-elsbetiae_contig11118.1003.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11118.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11118contigL-elsbetiae_contig11118:6295..6420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.6876497-CDS-L-elsbetiae_contig11118:6294..64201622815325.6876497-CDS-L-elsbetiae_contig11118:6294..6420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 6295..6420 +
1691682840.1154583-CDS-L-elsbetiae_contig11118:6294..64201691682840.1154583-CDS-L-elsbetiae_contig11118:6294..6420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 6295..6420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11118.1003.1prot_L-elsbetiae_contig11118.1003.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11118 6295..6420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11118.1003.1

>prot_L-elsbetiae_contig11118.1003.1 ID=prot_L-elsbetiae_contig11118.1003.1|Name=mRNA_L-elsbetiae_contig11118.1003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
DLHRGVEQGDVDAVSELLNTGVDAAALDADGRSPLLHATQGW
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mRNA from alignment at L-elsbetiae_contig11118:6295..6420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11118.1003.1 ID=mRNA_L-elsbetiae_contig11118.1003.1|Name=mRNA_L-elsbetiae_contig11118.1003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig11118:6295..6420+ (Laminarionema elsbetiae ELsaHSoW15)
GATCTCCACCGTGGTGTCGAACAGGGCGACGTCGACGCAGTTTCAGAGCT
GTTGAACACCGGCGTGGACGCAGCAGCGCTAGATGCTGACGGGAGGTCCC
CACTACTCCACGCAACCCAAGGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11118:6295..6420+

>mRNA_L-elsbetiae_contig11118.1003.1 ID=mRNA_L-elsbetiae_contig11118.1003.1|Name=mRNA_L-elsbetiae_contig11118.1003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig11118:6295..6420+ (Laminarionema elsbetiae ELsaHSoW15)
GATCTCCACCGTGGTGTCGAACAGGGCGACGTCGACGCAGTTTCAGAGCT
GTTGAACACCGGCGTGGACGCAGCAGCGCTAGATGCTGACGGGAGGTCCC
CACTACTCCACGCAACCCAAGGGTGGGATCTCCACCGTGGTGTCGAACAG
GGCGACGTCGACGCAGTTTCAGAGCTGTTGAACACCGGCGTGGACGCAGC
AGCGCTAGATGCTGACGGGAGGTCCCCACTACTCCACGCAACCCAAGGGT
GG
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