mRNA_L-elsbetiae_contig11118.1002.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11118.1002.1
Unique NamemRNA_L-elsbetiae_contig11118.1002.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11118.1002.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.020e-37
Identity = 82/195 (42.05%), Postives = 117/195 (60.00%), Query Frame = 1 
Query:    1 KHTILGID-SVPQVCGRGGRGHVNHFDTEAPCDFEGPPTRERLLACLPDTTWQECNDYLRPLSPSKQRTVLAVRDPRNVVISEHRMRQNHI-----CRTFFPSERALFFLISSFSPTILAWIHQRWMWHT-TALQES*LVVFLEDFEDSHLGLIDLAAFIGLRCSPGEALEHWQYLRHPSPHGNFTTYGLPKTTL 564
            KH I G+D  VP  C  GGR H ++F    PC  +  PTR+RL++CL DT+   C  ++    P+ +R+++ +RDPRNVVISE+ MR   I      RTF   E    F++  F   +++WIHQR+MWHT T +  S  +   E+ + SHLGLID+A F+GL+CS  +A + W   RHPSP G + + GL   T+
Sbjct:   84 KHIIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTS-ASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDE----FIMWKFE-VLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETV 272
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BLAST of mRNA_L-elsbetiae_contig11118.1002.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 7.070e-36
Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 1 
Query:    1 KHTILGIDSVPQV-CGRGGRGHVNHFDTEAPC-DFEGPPTRERLLACLPDTTWQECNDYLRPLSPSKQRTVLAVRDPRNVVISEHRMRQNHICRTFFPSERALFFLISSFSPTILAWIHQRWMWHT-TALQES*LVVFLEDFEDSHLGLIDLAAFIGLRCSPGEALEHWQYLRHPSPHGNFTTYGLPKTTL 564
            KH I G+   P   C  GGR H N+F    PC D E  PTRERL ACL +T+   C  Y+  + P  +R+++ +RDPR+V +SE  MR  +     +  +             +++W HQR++WHT T +  S  VVF ED +D H G I +A F+GL CS  +ALE W+  R+P+PHG+++T+GL + T+
Sbjct:  169 KHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTS-ALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETV 358
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BLAST of mRNA_L-elsbetiae_contig11118.1002.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 5.740e-35
Identity = 76/191 (39.79%), Postives = 110/191 (57.59%), Query Frame = 1 
Query:    1 KHTILGIDSVPQV-CGRGGRGHVNHFDTEAPC-DFEGPPTRERLLACLPDTTWQECNDYLRPLSPSKQRTVLAVRDPRNVVISEHRMRQNHICRTFFPSERALFFLISSFSPTILAWIHQRWMWHT-TALQES*LVVFLEDFEDSHLGLIDLAAFIGLRCSPGEALEHWQYLRHPSPHGNFTTYGLPKTTL 564
            KH I G+   P   C  GGR H N+F    PC D E  PTRERL ACL +T+   C  Y+  + P  +R+++ +RDPR+V +SE  MR  +     +  +             +++W HQR++WHT T +  S  VVF ED +D H G I +A F+GL CS  +ALE W+  R+P+PHG+++T+GL   T+
Sbjct:  235 KHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTS-ALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETI 424
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BLAST of mRNA_L-elsbetiae_contig11118.1002.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.160e-29
Identity = 68/182 (37.36%), Postives = 104/182 (57.14%), Query Frame = 1 
Query:    1 KHTILGID-SVPQVCGRGGRGHVNHFDTEAPCDFEGPPTRERLLACLPDTTWQECNDYLRPLSPSKQRTVLAVRDPRNVVISEHRMRQNHICRTFFPSERALFFLISSFSPTILAWIHQRWMWHTTALQ-ES*LVVFLEDFEDSHLGLIDLAAFIGLRCSPGEALEHWQYLRHPSPHGNFTT 540
            KH I G+D  +P  C  GGR H   F    PCD    PTRERL +CL +TT + C +Y+    P+ +R+++  RDPR+VVISE++MR     R  + +  +L   +      +++W+HQR+MWHT  L   S  V F ++ + S +G + +A  +GL CS  +A + W+  +  SP+G F T
Sbjct:  187 KHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTT-KRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFAT 367
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BLAST of mRNA_L-elsbetiae_contig11118.1002.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.920e-29
Identity = 75/224 (33.48%), Postives = 110/224 (49.11%), Query Frame = 1 
Query:    1 KHTILGID--SVPQVCGRGGRGHVNHFDTEAPCDFEGPPTRERLLACLPDTTWQECNDYLRPLSPSKQRTVLAVRDPRNVVISEHRMRQNHICRTFFPSERALFFLISSFS----PTILAWIHQRWMWHT-TALQES*LVVFLEDFE-----------------------------DSHLGLIDLAAFIGLRCSPGEALEHWQYLRHPSPHGNFTTYGLPKTTL 564
            KH I G+     P+ C +GGR H N F+   PC      TRE+L  CL    W   +  +  +    +RT + +RDPR+VV+SE RMR     R ++  E  +   +  F      TI++W HQRW+WHT T L ES  V+F +D +                              + +G+IDLAAF+GL CS  +A   W+  ++  PHG++TT+GL   T+
Sbjct:   59 KHVIPGMSWKGHPEGCNQGGRRHRNFFEDYPPCISGPASTREQLTGCL----WNTSSRCMGFVPSESRRTAVMLRDPRDVVLSEFRMR-----RDYYHQEEVMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTI 273
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11118.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JZR3_9PHAE2.020e-3742.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FXT7_ECTSI7.070e-3639.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6E2_9PHAE5.740e-3539.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE1.160e-2937.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLX3_9PHAE2.920e-2933.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11118contigL-elsbetiae_contig11118:271..2203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size564
Cds size393
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11118.1002.1prot_L-elsbetiae_contig11118.1002.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11118 271..1824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.5726492-CDS-L-elsbetiae_contig11118:270..4701622815325.5726492-CDS-L-elsbetiae_contig11118:270..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 271..470 +
1691682840.0619287-CDS-L-elsbetiae_contig11118:270..4701691682840.0619287-CDS-L-elsbetiae_contig11118:270..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 271..470 +
1622815325.6217065-CDS-L-elsbetiae_contig11118:681..7451622815325.6217065-CDS-L-elsbetiae_contig11118:681..745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 682..745 +
1691682840.0713615-CDS-L-elsbetiae_contig11118:681..7451691682840.0713615-CDS-L-elsbetiae_contig11118:681..745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 682..745 +
1622815325.6306298-CDS-L-elsbetiae_contig11118:1695..18241622815325.6306298-CDS-L-elsbetiae_contig11118:1695..1824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 1696..1824 +
1691682840.0824986-CDS-L-elsbetiae_contig11118:1695..18241691682840.0824986-CDS-L-elsbetiae_contig11118:1695..1824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11118 1696..1824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.6396484-UTR-L-elsbetiae_contig11118:1824..18511622815325.6396484-UTR-L-elsbetiae_contig11118:1824..1851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11118 1825..1851 +
1691682840.0939183-UTR-L-elsbetiae_contig11118:1824..18511691682840.0939183-UTR-L-elsbetiae_contig11118:1824..1851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11118 1825..1851 +
1622815325.6503136-UTR-L-elsbetiae_contig11118:2059..22031622815325.6503136-UTR-L-elsbetiae_contig11118:2059..2203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11118 2060..2203 +
1691682840.1037748-UTR-L-elsbetiae_contig11118:2059..22031691682840.1037748-UTR-L-elsbetiae_contig11118:2059..2203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11118 2060..2203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11118.1002.1

>prot_L-elsbetiae_contig11118.1002.1 ID=prot_L-elsbetiae_contig11118.1002.1|Name=mRNA_L-elsbetiae_contig11118.1002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
KHTILGIDSVPQVCGRGGRGHVNHFDTEAPCDFEGPPTRERLLACLPDTT
WQECNDYLRPLSPSKQRTVLAVRDPRNVVISEHRMRQNHICRTFFPSERA
LFFLISSFSPTILAWIHQRWMWHTTALQES*
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mRNA from alignment at L-elsbetiae_contig11118:271..2203+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11118.1002.1 ID=mRNA_L-elsbetiae_contig11118.1002.1|Name=mRNA_L-elsbetiae_contig11118.1002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1933bp|location=Sequence derived from alignment at L-elsbetiae_contig11118:271..2203+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCACACCATCCTTGGTATAGACAGTGTGCCGCAGGTCTGTGGCCGCGG
TGGGCGGGGACACGTGAACCACTTCGATACTGAAGCTCCATGTGATTTTG
AGGGGCCCCCTACACGAGAACGATTACTGGCGTGCCTCCCGGACACAACT
TGGCAAGAATGCAACGATTACTTGCGACCGTTAAGTCCGTCAAAGCAACG
GTGAGGGTACCATGTTGCAGGTAATTGCGTACCGCTGTAGATCGGGAACC
ACTGTGTAGGTCGCTGCAGCATGTAGAATCATTTGTGTGGGAAGTGATGA
CACAGCTGTTTCTGAAAAGCGCTGTTTTAGGCTTGCCTTGGCCTTCAGAC
CTGGGGTGGTTCCGGTAGTAGTGACACCGGCGACGTCCCCTTACCCTTGC
ACTGTCGGCAGAACTGTTCTCGCCGTGCGAGATCCGCGGAACGTAGTCAT
ATCCGAGCACAGAATGCGCCAAAATGTCTACCACGAGTCCCTTGGAGAGC
TAGACGCATTCATTCAGGCTCGCTTCGAGGTGAGCAGCGCTACGGATTCA
GCTGCACACTCGGGGGCATCGGTCCAACCCGAAATACTCCTGCATACTAG
CAACGGGACAGTGCATTGACGGAGCACTCGTAGTTTATTGAGTACCGCTG
GTGTCTATGGGGGGCAGACGTTCCAGTACAAAGTATGCACTAAGCAGCGT
TTTGTTTGTTTCGATCGCTCCAAGACCTTGGCAAGTTATTACTTGAAGCT
CGCGTATGTAGGTCCTAAATATGCTCTGCAGGCGTGATATTTCTTACGAG
GTAGTTGGAGGCCCCGATCAAATTATTTTATATCTTTGGTGATCCGAATT
TTTGGGCGTCATGGTCTAAGCCGTGACCTATGCGCCATGACTAGTCATTT
TTATTGTAGTGATGAACAGCCATGACTAGTCACCGATTATGGCCAAGATC
ATGAAGTCACGTCGTGGCCGGTCATGACGATGATGGTGATGGCCTTGGGC
GTGTATTTGTGAATGCTTACTCGGACCATCATGACAGGTCGTGACTCTGA
GTAGATAATAGGCCGTGCTGGCGTTGTTCAGGTGCAAGATTGGAGGGCAG
GGTTAGGGCTAGGCCGCGGCTAGGCCGTGGCGGGAGAGTTCATAGCGCGT
GTGAGAGAGATGTCGACGCCACCGCACGCTCGTATAAATCACTTTCTCCA
CAAAGGATCTGCATGCAAGCTCTACTATATAAACAACTCGTCAATTATCT
GGTCATTATTTGGTCATGGTCGACGTCGAGTTGTCAAAATACCGCCCTCG
TGACCTAGGGCATGACCGATCTGACCAGTTACGAGTGGCTGGCCGTGAGC
GTTCAATTTGTTCGTGGGTGTTCCTGAAAGGCCATAACTACGTCGCCCAA
TAATGCGCATCATTGCAATTCGCAGCACATTTGTCGAACATTTTTTCCGT
CAGAGAGAGCCCTCTTTTTTCTGATCTCCTCCTTTTCGCCGACCATTTTG
GCGTGGATTCACCAGCGGTGGATGTGGCACACAACAGCTCTGCAAGAATC
TTAACTTGTAGTTTTCCTCGAGGATTTTGAGGTAAGGTATCTTGTGTTGC
AGAATCGACCACACAGCGCCACTAGATTGTGGCCCTGGCTAGTGTCAGCC
CAAGTACATGGTTGCACATTTCCTCTCCTAACAAAGACTCACTTCGCGCC
CCGCGTCATCAGTGCATGCACGTAAAGACTCTTCGGCATAGAACCATACG
TGCGACTCTTCTGTGCCGCTCGTTTGCCAACCTGCTCAGGATAGCCACCT
TGGTTTGATCGACCTGGCTGCGTTCATAGGCCTGAGATGTTCCCCGGGTG
AGGCTCTTGAACACTGGCAATATCTTCGACACCCGTCACCTCACGGCAAT
TTTACCACGTACGGGCTTCCAAAGACAACTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11118:271..2203+

>mRNA_L-elsbetiae_contig11118.1002.1 ID=mRNA_L-elsbetiae_contig11118.1002.1|Name=mRNA_L-elsbetiae_contig11118.1002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig11118:271..2203+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCACACCATCCTTGGTATAGACAGTGTGCCGCAGGTCTGTGGCCGCGG
TGGGCGGGGACACGTGAACCACTTCGATACTGAAGCTCCATGTGATTTTG
AGGGGCCCCCTACACGAGAACGATTACTGGCGTGCCTCCCGGACACAACT
TGGCAAGAATGCAACGATTACTTGCGACCGTTAAGTCCGTCAAAGCAACG
AAGCACACCATCCTTGGTATAGACAGTGTGCCGCAGGTCTGTGGCCGCGG
TGGGCGGGGACACGTGAACCACTTCGATACTGAAGCTCCATGTGATTTTG
AGGGGCCCCCTACACGAGAACGATTACTGGCGTGCCTCCCGGACACAACT
TGGCAAGAATGCAACGATTACTTGCGACCGTTAAGTCCGTCAAAGCAACG
AACTGTTCTCGCCGTGCGAGATCCGCGGAACGTAGTCATATCCGAGCACA
GAATGCGCCAAAATAACTGTTCTCGCCGTGCGAGATCCGCGGAACGTAGT
CATATCCGAGCACAGAATGCGCCAAAATCACATTTGTCGAACATTTTTTC
CGTCAGAGAGAGCCCTCTTTTTTCTGATCTCCTCCTTTTCGCCGACCATT
TTGGCGTGGATTCACCAGCGGTGGATGTGGCACACAACAGCTCTGCAAGA
ATCTTAACACATTTGTCGAACATTTTTTCCGTCAGAGAGAGCCCTCTTTT
TTCTGATCTCCTCCTTTTCGCCGACCATTTTGGCGTGGATTCACCAGCGG
TGGATGTGGCACACAACAGCTCTGCAAGAATCTTAA
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