mRNA_L-elsbetiae_contig11115.1000.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11115.1000.1
Unique NamemRNA_L-elsbetiae_contig11115.1000.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11115.1000.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-16
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   25 TEDDPGGFVKVFGTAGNGVFEYSGRADVHD-DRSLIGVVFEEAGRYEMRIAGRSHGHEIDQIVLFGEDLDVEFAGGGC 255
            T    G FVKV+G A +GVF+Y G A+  + D + I + F  AG YEM I GRSHGH+IDQIVLFG+ L V+ A  GC
Sbjct:  828 TSKSYGTFVKVYGNAADGVFKYQGTAEEENGDHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGDSLKVDDAVAGC 905
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BLAST of mRNA_L-elsbetiae_contig11115.1000.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 6.100e-16
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:   25 TEDDPGGFVKVFGTAGNGVFEYSGRADVHDDRSLIGVVFEEAGRYEMRIAGRSHGHEIDQIVLFGEDLDVE--FAGGGC 255
            T++  G F+KV+G A NG FEYSG  +     + I V FEEAG Y M I+GRSHG +IDQI++FGEDL V+   A  GC
Sbjct:  691 TQESYGTFIKVYGRATNGDFEYSGTGEDSHGHTQIAVEFEEAGEYAMEISGRSHGLQIDQILVFGEDLSVDEAVANTGC 769
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BLAST of mRNA_L-elsbetiae_contig11115.1000.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.070e-13
Identity = 41/79 (51.90%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   25 TEDDPGGFVKVFGTAGNGVFEYSGRADVHDD-RSLIGVVFEEAGRYEMRIAGRSHGHEIDQIVLFGEDLDV-EFAGGGC 255
            T    G FVKV+G A +GVF+Y G A+  D   + I + F  AG YEM I GRSHGH+IDQIVLFG      E A  GC
Sbjct:  409 TSKSYGTFVKVYGNAADGVFKYQGTAEDEDGAHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGGSFHTAEDAVAGC 487
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11115.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LED7_ECTSI1.310e-1653.85EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FU28_ECTSI6.100e-1653.16EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMV6_9PHAE2.070e-1351.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11115contigL-elsbetiae_contig11115:4535..4912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog2880.D8LED7
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons1
Model size379
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.45084-CDS-L-elsbetiae_contig11115:4534..47921622815325.45084-CDS-L-elsbetiae_contig11115:4534..4792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11115 4535..4792 +
1691682839.9946947-CDS-L-elsbetiae_contig11115:4534..47921691682839.9946947-CDS-L-elsbetiae_contig11115:4534..4792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11115 4535..4792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.4648602-UTR-L-elsbetiae_contig11115:4792..49121622815325.4648602-UTR-L-elsbetiae_contig11115:4792..4912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11115 4793..4912 +
1691682840.0126915-UTR-L-elsbetiae_contig11115:4792..49121691682840.0126915-UTR-L-elsbetiae_contig11115:4792..4912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11115 4793..4912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11115.1000.1prot_L-elsbetiae_contig11115.1000.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11115 4535..4792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11115.1000.1

>prot_L-elsbetiae_contig11115.1000.1 ID=prot_L-elsbetiae_contig11115.1000.1|Name=mRNA_L-elsbetiae_contig11115.1000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
KNGGASYNTEDDPGGFVKVFGTAGNGVFEYSGRADVHDDRSLIGVVFEEA
GRYEMRIAGRSHGHEIDQIVLFGEDLDVEFAGGGC*
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mRNA from alignment at L-elsbetiae_contig11115:4535..4912+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11115.1000.1 ID=mRNA_L-elsbetiae_contig11115.1000.1|Name=mRNA_L-elsbetiae_contig11115.1000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig11115:4535..4912+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAACGGCGGCGCCAGCTACAACACGGAGGATGACCCGGGGGGGTTCGT
CAAGGTCTTCGGCACCGCCGGGAACGGCGTGTTCGAGTACTCCGGCAGGG
CTGACGTCCACGACGACCGCTCGCTGATCGGCGTCGTGTTTGAGGAGGCC
GGCAGGTACGAGATGAGGATCGCCGGCCGCTCCCACGGGCATGAGATCGA
CCAGATCGTTCTGTTCGGAGAGGACCTCGACGTCGAGTTCGCCGGCGGCG
GCTGCTAGATATAAATGGAAAGAGCGATAAATCAACCTCGCGTCGCTCGA
GAAACACATGAAACCAGCAGGATTGGTTGTCAGCGATGAATCTCGTGCCG
TGCGAAACACACCACCACTACACTAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11115:4535..4912+

>mRNA_L-elsbetiae_contig11115.1000.1 ID=mRNA_L-elsbetiae_contig11115.1000.1|Name=mRNA_L-elsbetiae_contig11115.1000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig11115:4535..4912+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAACGGCGGCGCCAGCTACAACACGGAGGATGACCCGGGGGGGTTCGT
CAAGGTCTTCGGCACCGCCGGGAACGGCGTGTTCGAGTACTCCGGCAGGG
CTGACGTCCACGACGACCGCTCGCTGATCGGCGTCGTGTTTGAGGAGGCC
GGCAGGTACGAGATGAGGATCGCCGGCCGCTCCCACGGGCATGAGATCGA
CCAGATCGTTCTGTTCGGAGAGGACCTCGACGTCGAGTTCGCCGGCGGCG
GCTGCTAGAAGAACGGCGGCGCCAGCTACAACACGGAGGATGACCCGGGG
GGGTTCGTCAAGGTCTTCGGCACCGCCGGGAACGGCGTGTTCGAGTACTC
CGGCAGGGCTGACGTCCACGACGACCGCTCGCTGATCGGCGTCGTGTTTG
AGGAGGCCGGCAGGTACGAGATGAGGATCGCCGGCCGCTCCCACGGGCAT
GAGATCGACCAGATCGTTCTGTTCGGAGAGGACCTCGACGTCGAGTTCGC
CGGCGGCGGCTGCTAG
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