mRNA_L-elsbetiae_contig11112.999.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11112.999.1
Unique NamemRNA_L-elsbetiae_contig11112.999.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11112.999.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.530e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 3 
Query:    6 MKVECFGKLDVVLLSKLRPPIRVTVKNMAVVPGLKSNYLSLSAIEMHDGIHMDETGIYTLDGKVHFAELPAGNHVAGMRVERGREPPAVLVALMRPGVQRS 308
            +K ECFG LDVV     R  + VT+K++AVVP L  + +SL+ I+    + ++  G + L+G+VHF++LP GN++   R+  G  PPA++ A +RPG  RS
Sbjct:   54 LKAECFGSLDVVF--HCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGASPPAMVAATVRPGRPRS 152
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11112.999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE2.530e-1641.58Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11112contigL-elsbetiae_contig11112:5913..6403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size486
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.3938363-UTR-L-elsbetiae_contig11112:5912..59171622815325.3938363-UTR-L-elsbetiae_contig11112:5912..5917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11112 5913..5917 +
1691682839.96416-UTR-L-elsbetiae_contig11112:5912..59171691682839.96416-UTR-L-elsbetiae_contig11112:5912..5917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11112 5913..5917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.4075277-CDS-L-elsbetiae_contig11112:5917..64031622815325.4075277-CDS-L-elsbetiae_contig11112:5917..6403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11112 5918..6403 +
1691682839.9771025-CDS-L-elsbetiae_contig11112:5917..64031691682839.9771025-CDS-L-elsbetiae_contig11112:5917..6403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11112 5918..6403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11112.999.1prot_L-elsbetiae_contig11112.999.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11112 5918..6403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11112.999.1

>prot_L-elsbetiae_contig11112.999.1 ID=prot_L-elsbetiae_contig11112.999.1|Name=mRNA_L-elsbetiae_contig11112.999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MKVECFGKLDVVLLSKLRPPIRVTVKNMAVVPGLKSNYLSLSAIEMHDGI
HMDETGIYTLDGKVHFAELPAGNHVAGMRVERGREPPAVLVALMRPGVQR
SPKSASTMAPPPGFSALPVMGGTARHVAPPFGASSSTPAVAAPGGSAVPA
ASAGAVAGQPLM
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mRNA from alignment at L-elsbetiae_contig11112:5913..6403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11112.999.1 ID=mRNA_L-elsbetiae_contig11112.999.1|Name=mRNA_L-elsbetiae_contig11112.999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=491bp|location=Sequence derived from alignment at L-elsbetiae_contig11112:5913..6403+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGATGAAGGTAGAGTGCTTTGGCAAGCTGGATGTAGTGCTTCTTTCC
AAGCTTCGCCCTCCCATCCGTGTCACGGTGAAGAACATGGCCGTGGTACC
AGGGCTGAAGTCCAACTATCTGTCCCTCAGCGCCATCGAGATGCACGACG
GCATCCACATGGACGAGACCGGCATATACACCCTTGACGGCAAGGTCCAC
TTCGCCGAGCTCCCCGCTGGCAACCACGTAGCAGGTATGCGCGTGGAACG
GGGCCGTGAACCTCCGGCAGTGCTGGTGGCCTTGATGCGGCCAGGAGTGC
AGCGGAGCCCCAAGAGTGCGTCTACGATGGCGCCGCCGCCTGGTTTTAGT
GCCTTGCCCGTGATGGGGGGGACGGCCAGGCACGTGGCGCCACCGTTTGG
AGCATCGTCATCTACGCCGGCAGTTGCGGCCCCCGGTGGCAGTGCTGTCC
CCGCCGCGTCGGCGGGGGCAGTGGCCGGGCAGCCGTTGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11112:5913..6403+

>mRNA_L-elsbetiae_contig11112.999.1 ID=mRNA_L-elsbetiae_contig11112.999.1|Name=mRNA_L-elsbetiae_contig11112.999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig11112:5913..6403+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTAGAGTGCTTTGGCAAGCTGGATGTAGTGCTTCTTTCCAAGCT
TCGCCCTCCCATCCGTGTCACGGTGAAGAACATGGCCGTGGTACCAGGGC
TGAAGTCCAACTATCTGTCCCTCAGCGCCATCGAGATGCACGACGGCATC
CACATGGACGAGACCGGCATATACACCCTTGACGGCAAGGTCCACTTCGC
CGAGCTCCCCGCTGGCAACCACGTAGCAGGTATGCGCGTGGAACGGGGCC
GTGAACCTCCGGCAGTGCTGGTGGCCTTGATGCGGCCAGGAGTGCAGCGG
AGCCCCAAGAGTGCGTCTACGATGGCGCCGCCGCCTGGTTTTAGTGCCTT
GCCCGTGATGGGGGGGACGGCCAGGCACGTGGCGCCACCGTTTGGAGCAT
CGTCATCTACGCCGGCAGTTGCGGCCCCCGGTGGCAGTGCTGTCCCCGCC
GCGTCGGCGGGGGCAGTGGCCGGGCAGCCGTTGATGATGAAGGTAGAGTG
CTTTGGCAAGCTGGATGTAGTGCTTCTTTCCAAGCTTCGCCCTCCCATCC
GTGTCACGGTGAAGAACATGGCCGTGGTACCAGGGCTGAAGTCCAACTAT
CTGTCCCTCAGCGCCATCGAGATGCACGACGGCATCCACATGGACGAGAC
CGGCATATACACCCTTGACGGCAAGGTCCACTTCGCCGAGCTCCCCGCTG
GCAACCACGTAGCAGGTATGCGCGTGGAACGGGGCCGTGAACCTCCGGCA
GTGCTGGTGGCCTTGATGCGGCCAGGAGTGCAGCGGAGCCCCAAGAGTGC
GTCTACGATGGCGCCGCCGCCTGGTTTTAGTGCCTTGCCCGTGATGGGGG
GGACGGCCAGGCACGTGGCGCCACCGTTTGGAGCATCGTCATCTACGCCG
GCAGTTGCGGCCCCCGGTGGCAGTGCTGTCCCCGCCGCGTCGGCGGGGGC
AGTGGCCGGGCAGCCGTTGATG
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