mRNA_L-elsbetiae_contig1111.998.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1111.998.1
Unique NamemRNA_L-elsbetiae_contig1111.998.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1111.998.1 vs. uniprot
Match: A0A6H5KY09_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY09_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.140e-39
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 1 
Query:  748 PAPTDAFGHVVMERSLSDSSVVTASDFSVGQKSNNTPIILPSQQVSDEDAIKELVALLAKGKGLPVVKHATGMGGGKSRKLLKLNQHQGAGERHLVLCGVLPPYFKTRIPVQDVDRVEAKWCCVVVHARGRS 1143
            P  T   G V +ERSLSD+SVVTASDF  G   +N P IL    ++D DA++ELV LL +GKGLPVVKHATG+GG KSRKLL+LN+  G     L LCG+LPPYFKT+IPV+DVDRV+AKWCCVV+HA+GRS
Sbjct:  180 PVETIRNGVVTVERSLSDTSVVTASDF--GAPVSNKPTILTD--LNDPDAVRELVGLLGRGKGLPVVKHATGLGG-KSRKLLRLNELGG----ELALCGMLPPYFKTKIPVRDVDRVDAKWCCVVIHAKGRS 302
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1111.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY09_9PHAE1.140e-3964.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1111contigL-elsbetiae_contig1111:26462..27607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_001230.1
Exons1
Model size1148
Cds size1146
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.071952-CDS-L-elsbetiae_contig1111:26461..276071622815325.071952-CDS-L-elsbetiae_contig1111:26461..27607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1111 26462..27607 +
1691682839.76131-CDS-L-elsbetiae_contig1111:26461..276071691682839.76131-CDS-L-elsbetiae_contig1111:26461..27607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1111 26462..27607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1111.998.1prot_L-elsbetiae_contig1111.998.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1111 26462..27607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1111.998.1

>prot_L-elsbetiae_contig1111.998.1 ID=prot_L-elsbetiae_contig1111.998.1|Name=mRNA_L-elsbetiae_contig1111.998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=382bp
RTQPTSVKPAHHTTSRTDHLQEEATQGMSPRATDSGMRAPAPAAAPSPIV
IHSHHQQGSYGRKKGKKPLSSGFKAIVWTTPPPVGTASTAPPSLSSQQRR
ESPRAAPSPSGSASSEQHARKTDFGPVDEDRRRSGSNSSGGGGSLRRSPR
ARVPQAPQQPSYKRQSSLGSPSALLRTEAEAARRQNKRLSYPPPAAAAES
KGRAIGTARSEEFGDQLAGRALQGLPEPAALEGTGIESSTSHSAPHSRRP
APTDAFGHVVMERSLSDSSVVTASDFSVGQKSNNTPIILPSQQVSDEDAI
KELVALLAKGKGLPVVKHATGMGGGKSRKLLKLNQHQGAGERHLVLCGVL
PPYFKTRIPVQDVDRVEAKWCCVVVHARGRSP
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mRNA from alignment at L-elsbetiae_contig1111:26462..27607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1111.998.1 ID=mRNA_L-elsbetiae_contig1111.998.1|Name=mRNA_L-elsbetiae_contig1111.998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig1111:26462..27607+ (Laminarionema elsbetiae ELsaHSoW15)
CGAACTCAACCCACATCCGTGAAGCCCGCACACCACACCACAAGTCGTAC
AGACCACCTGCAAGAGGAGGCAACTCAAGGCATGTCGCCAAGAGCTACAG
ACAGCGGTATGCGCGCGCCGGCGCCGGCGGCAGCACCATCCCCTATCGTG
ATACACTCTCACCATCAGCAGGGATCATACGGGAGAAAGAAAGGGAAGAA
ACCACTCTCGTCTGGATTCAAAGCAATCGTGTGGACGACTCCGCCACCAG
TGGGGACTGCCTCCACCGCCCCCCCGTCGTTGTCCTCGCAGCAGCGAAGA
GAGTCGCCGCGGGCTGCGCCCTCTCCGAGCGGCAGCGCCTCCTCGGAACA
ACACGCTCGCAAGACCGATTTTGGGCCGGTTGATGAGGATCGGCGAAGGA
GCGGTAGCAACAGCAGCGGCGGCGGCGGCAGCTTGCGACGCTCGCCGCGG
GCGCGCGTGCCGCAGGCGCCGCAGCAGCCATCCTACAAGCGGCAGAGCAG
CCTCGGTTCACCGAGCGCGTTGTTGAGGACGGAAGCCGAGGCAGCGCGGC
GACAGAATAAGCGACTTTCATATCCTCCTCCTGCGGCGGCGGCCGAGAGC
AAGGGCCGTGCTATCGGAACAGCTAGGAGCGAAGAGTTCGGGGATCAGCT
CGCGGGAAGAGCGCTGCAAGGTCTTCCAGAGCCAGCGGCATTGGAGGGGA
CAGGGATCGAGAGCAGCACCAGCCATTCCGCGCCCCATTCGCGTCGGCCA
GCACCCACCGACGCCTTCGGACACGTTGTCATGGAACGTTCGCTCTCAGA
CTCGTCCGTCGTCACGGCGTCGGACTTCAGTGTCGGGCAGAAGTCCAACA
ACACGCCAATCATCCTCCCCAGCCAGCAGGTGAGCGACGAGGACGCGATC
AAGGAGCTCGTGGCGCTGCTGGCGAAGGGGAAGGGCCTGCCGGTCGTGAA
GCACGCGACGGGCATGGGCGGGGGCAAGAGCCGCAAGCTGCTGAAACTCA
ACCAGCATCAGGGGGCGGGGGAGCGGCACCTTGTCCTCTGCGGCGTGCTG
CCGCCCTACTTCAAGACCAGGATCCCGGTGCAGGACGTCGACAGGGTGGA
GGCGAAGTGGTGCTGCGTCGTGGTGCACGCGAGGGGTCGATCTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1111:26462..27607+

>mRNA_L-elsbetiae_contig1111.998.1 ID=mRNA_L-elsbetiae_contig1111.998.1|Name=mRNA_L-elsbetiae_contig1111.998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig1111:26462..27607+ (Laminarionema elsbetiae ELsaHSoW15)
CGAACTCAACCCACATCCGTGAAGCCCGCACACCACACCACAAGTCGTAC
AGACCACCTGCAAGAGGAGGCAACTCAAGGCATGTCGCCAAGAGCTACAG
ACAGCGGTATGCGCGCGCCGGCGCCGGCGGCAGCACCATCCCCTATCGTG
ATACACTCTCACCATCAGCAGGGATCATACGGGAGAAAGAAAGGGAAGAA
ACCACTCTCGTCTGGATTCAAAGCAATCGTGTGGACGACTCCGCCACCAG
TGGGGACTGCCTCCACCGCCCCCCCGTCGTTGTCCTCGCAGCAGCGAAGA
GAGTCGCCGCGGGCTGCGCCCTCTCCGAGCGGCAGCGCCTCCTCGGAACA
ACACGCTCGCAAGACCGATTTTGGGCCGGTTGATGAGGATCGGCGAAGGA
GCGGTAGCAACAGCAGCGGCGGCGGCGGCAGCTTGCGACGCTCGCCGCGG
GCGCGCGTGCCGCAGGCGCCGCAGCAGCCATCCTACAAGCGGCAGAGCAG
CCTCGGTTCACCGAGCGCGTTGTTGAGGACGGAAGCCGAGGCAGCGCGGC
GACAGAATAAGCGACTTTCATATCCTCCTCCTGCGGCGGCGGCCGAGAGC
AAGGGCCGTGCTATCGGAACAGCTAGGAGCGAAGAGTTCGGGGATCAGCT
CGCGGGAAGAGCGCTGCAAGGTCTTCCAGAGCCAGCGGCATTGGAGGGGA
CAGGGATCGAGAGCAGCACCAGCCATTCCGCGCCCCATTCGCGTCGGCCA
GCACCCACCGACGCCTTCGGACACGTTGTCATGGAACGTTCGCTCTCAGA
CTCGTCCGTCGTCACGGCGTCGGACTTCAGTGTCGGGCAGAAGTCCAACA
ACACGCCAATCATCCTCCCCAGCCAGCAGGTGAGCGACGAGGACGCGATC
AAGGAGCTCGTGGCGCTGCTGGCGAAGGGGAAGGGCCTGCCGGTCGTGAA
GCACGCGACGGGCATGGGCGGGGGCAAGAGCCGCAAGCTGCTGAAACTCA
ACCAGCATCAGGGGGCGGGGGAGCGGCACCTTGTCCTCTGCGGCGTGCTG
CCGCCCTACTTCAAGACCAGGATCCCGGTGCAGGACGTCGACAGGGTGGA
GGCGAAGTGGTGCTGCGTCGTGGTGCACGCGAGGGGTCGATCTCCGCGAA
CTCAACCCACATCCGTGAAGCCCGCACACCACACCACAAGTCGTACAGAC
CACCTGCAAGAGGAGGCAACTCAAGGCATGTCGCCAAGAGCTACAGACAG
CGGTATGCGCGCGCCGGCGCCGGCGGCAGCACCATCCCCTATCGTGATAC
ACTCTCACCATCAGCAGGGATCATACGGGAGAAAGAAAGGGAAGAAACCA
CTCTCGTCTGGATTCAAAGCAATCGTGTGGACGACTCCGCCACCAGTGGG
GACTGCCTCCACCGCCCCCCCGTCGTTGTCCTCGCAGCAGCGAAGAGAGT
CGCCGCGGGCTGCGCCCTCTCCGAGCGGCAGCGCCTCCTCGGAACAACAC
GCTCGCAAGACCGATTTTGGGCCGGTTGATGAGGATCGGCGAAGGAGCGG
TAGCAACAGCAGCGGCGGCGGCGGCAGCTTGCGACGCTCGCCGCGGGCGC
GCGTGCCGCAGGCGCCGCAGCAGCCATCCTACAAGCGGCAGAGCAGCCTC
GGTTCACCGAGCGCGTTGTTGAGGACGGAAGCCGAGGCAGCGCGGCGACA
GAATAAGCGACTTTCATATCCTCCTCCTGCGGCGGCGGCCGAGAGCAAGG
GCCGTGCTATCGGAACAGCTAGGAGCGAAGAGTTCGGGGATCAGCTCGCG
GGAAGAGCGCTGCAAGGTCTTCCAGAGCCAGCGGCATTGGAGGGGACAGG
GATCGAGAGCAGCACCAGCCATTCCGCGCCCCATTCGCGTCGGCCAGCAC
CCACCGACGCCTTCGGACACGTTGTCATGGAACGTTCGCTCTCAGACTCG
TCCGTCGTCACGGCGTCGGACTTCAGTGTCGGGCAGAAGTCCAACAACAC
GCCAATCATCCTCCCCAGCCAGCAGGTGAGCGACGAGGACGCGATCAAGG
AGCTCGTGGCGCTGCTGGCGAAGGGGAAGGGCCTGCCGGTCGTGAAGCAC
GCGACGGGCATGGGCGGGGGCAAGAGCCGCAAGCTGCTGAAACTCAACCA
GCATCAGGGGGCGGGGGAGCGGCACCTTGTCCTCTGCGGCGTGCTGCCGC
CCTACTTCAAGACCAGGATCCCGGTGCAGGACGTCGACAGGGTGGAGGCG
AAGTGGTGCTGCGTCGTGGTGCACGCGAGGGGTCGATCTCCG
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