mRNA_L-elsbetiae_contig1110.992.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1110.992.1
Unique NamemRNA_L-elsbetiae_contig1110.992.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1110.992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1110contigL-elsbetiae_contig1110:7208..7560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815324.7899363-CDS-L-elsbetiae_contig1110:7207..75581622815324.7899363-CDS-L-elsbetiae_contig1110:7207..7558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1110 7208..7558 +
1691682839.5469785-CDS-L-elsbetiae_contig1110:7207..75581691682839.5469785-CDS-L-elsbetiae_contig1110:7207..7558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1110 7208..7558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1110.992.1prot_L-elsbetiae_contig1110.992.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1110 7208..7558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1110.992.1

>prot_L-elsbetiae_contig1110.992.1 ID=prot_L-elsbetiae_contig1110.992.1|Name=mRNA_L-elsbetiae_contig1110.992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
NSSYRASPILSLQKKSLDKRGPTRPIFKDCCTGSEQRSLQEPKNTNTHKN
FSCVRTKNKKKHLTCCFASDKKKRWRFKSSSSLFVCSHLDRPPPQTGHRR
RTTTQPPAYPSGRTHEC
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mRNA from alignment at L-elsbetiae_contig1110:7208..7560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1110.992.1 ID=mRNA_L-elsbetiae_contig1110.992.1|Name=mRNA_L-elsbetiae_contig1110.992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=353bp|location=Sequence derived from alignment at L-elsbetiae_contig1110:7208..7560+ (Laminarionema elsbetiae ELsaHSoW15)
AACAGTTCTTATAGAGCCTCTCCTATTTTATCACTACAAAAAAAGTCATT
AGACAAGAGAGGGCCCACGCGTCCGATTTTTAAAGACTGCTGTACAGGCT
CTGAACAGCGCTCGCTACAAGAACCCAAGAATACAAACACACACAAAAAC
TTCTCGTGCGTGCGAACGAAAAACAAGAAAAAACACTTGACTTGCTGCTT
TGCCTCCGACAAAAAGAAGAGGTGGCGTTTCAAATCATCAAGCTCACTCT
TTGTCTGTTCCCATCTCGATCGGCCCCCGCCGCAAACGGGCCACCGAAGA
CGAACAACCACGCAGCCGCCAGCATACCCATCAGGAAGGACGCACGAGTG
CTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1110:7208..7560+

>mRNA_L-elsbetiae_contig1110.992.1 ID=mRNA_L-elsbetiae_contig1110.992.1|Name=mRNA_L-elsbetiae_contig1110.992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1110:7208..7560+ (Laminarionema elsbetiae ELsaHSoW15)
AACAGTTCTTATAGAGCCTCTCCTATTTTATCACTACAAAAAAAGTCATT
AGACAAGAGAGGGCCCACGCGTCCGATTTTTAAAGACTGCTGTACAGGCT
CTGAACAGCGCTCGCTACAAGAACCCAAGAATACAAACACACACAAAAAC
TTCTCGTGCGTGCGAACGAAAAACAAGAAAAAACACTTGACTTGCTGCTT
TGCCTCCGACAAAAAGAAGAGGTGGCGTTTCAAATCATCAAGCTCACTCT
TTGTCTGTTCCCATCTCGATCGGCCCCCGCCGCAAACGGGCCACCGAAGA
CGAACAACCACGCAGCCGCCAGCATACCCATCAGGAAGGACGCACGAGTG
CAACAGTTCTTATAGAGCCTCTCCTATTTTATCACTACAAAAAAAGTCAT
TAGACAAGAGAGGGCCCACGCGTCCGATTTTTAAAGACTGCTGTACAGGC
TCTGAACAGCGCTCGCTACAAGAACCCAAGAATACAAACACACACAAAAA
CTTCTCGTGCGTGCGAACGAAAAACAAGAAAAAACACTTGACTTGCTGCT
TTGCCTCCGACAAAAAGAAGAGGTGGCGTTTCAAATCATCAAGCTCACTC
TTTGTCTGTTCCCATCTCGATCGGCCCCCGCCGCAAACGGGCCACCGAAG
ACGAACAACCACGCAGCCGCCAGCATACCCATCAGGAAGGACGCACGAGT
GC
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