mRNA_L-elsbetiae_contig11091.979.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11091.979.1
Unique NamemRNA_L-elsbetiae_contig11091.979.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11091.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11091contigL-elsbetiae_contig11091:1436..1925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size490
Cds size354
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815323.4639626-UTR-L-elsbetiae_contig11091:1435..15711622815323.4639626-UTR-L-elsbetiae_contig11091:1435..1571Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11091 1436..1571 +
1691682838.629878-UTR-L-elsbetiae_contig11091:1435..15711691682838.629878-UTR-L-elsbetiae_contig11091:1435..1571Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11091 1436..1571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815323.476327-CDS-L-elsbetiae_contig11091:1571..19251622815323.476327-CDS-L-elsbetiae_contig11091:1571..1925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11091 1572..1925 +
1691682838.6423912-CDS-L-elsbetiae_contig11091:1571..19251691682838.6423912-CDS-L-elsbetiae_contig11091:1571..1925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11091 1572..1925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11091.979.1prot_L-elsbetiae_contig11091.979.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11091 1572..1925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11091.979.1

>prot_L-elsbetiae_contig11091.979.1 ID=prot_L-elsbetiae_contig11091.979.1|Name=mRNA_L-elsbetiae_contig11091.979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MCFIEHRAGLRIVRHTARRSIVVGLQLLCAPGARRIRRGSGKQSANTNQL
TGSHVHDRHSDRRWRTWGHLEASCGHVAGDGESTYSKPCARHSDRRWRTW
GHLEASRGHVAGNGARQ*
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mRNA from alignment at L-elsbetiae_contig11091:1436..1925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11091.979.1 ID=mRNA_L-elsbetiae_contig11091.979.1|Name=mRNA_L-elsbetiae_contig11091.979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=490bp|location=Sequence derived from alignment at L-elsbetiae_contig11091:1436..1925+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGCAGGGGGACGCACGAGCTTGGCCACGAAGGGGGGTTGAACTCGG
CGAACCCTTAGTGCGTGCACGAGCTCTCTGTGTCTGTCGTGTCGTAGAGG
AGGAAGAGAAGCAGGAGGGGTCGGGAGATCATTCGTATGTGCTTCATAGA
ACATCGTGCGGGCCTCCGTATTGTTAGACACACAGCACGACGAAGTATTG
TCGTGGGACTGCAACTACTGTGCGCTCCGGGTGCCAGAAGAATACGTCGT
GGCTCCGGTAAACAATCTGCAAACACGAATCAACTTACAGGAAGCCATGT
GCACGACAGACACAGCGATCGCAGGTGGAGAACTTGGGGACATTTGGAAG
CGAGCTGTGGCCACGTCGCCGGGGATGGCGAATCAACTTACAGCAAGCCA
TGTGCACGACATAGCGATCGCAGGTGGAGAACTTGGGGACATTTGGAAGC
GAGCCGTGGCCACGTCGCCGGGAATGGCGCCCGGCAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11091:1436..1925+

>mRNA_L-elsbetiae_contig11091.979.1 ID=mRNA_L-elsbetiae_contig11091.979.1|Name=mRNA_L-elsbetiae_contig11091.979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig11091:1436..1925+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTTCATAGAACATCGTGCGGGCCTCCGTATTGTTAGACACACAGC
ACGACGAAGTATTGTCGTGGGACTGCAACTACTGTGCGCTCCGGGTGCCA
GAAGAATACGTCGTGGCTCCGGTAAACAATCTGCAAACACGAATCAACTT
ACAGGAAGCCATGTGCACGACAGACACAGCGATCGCAGGTGGAGAACTTG
GGGACATTTGGAAGCGAGCTGTGGCCACGTCGCCGGGGATGGCGAATCAA
CTTACAGCAAGCCATGTGCACGACATAGCGATCGCAGGTGGAGAACTTGG
GGACATTTGGAAGCGAGCCGTGGCCACGTCGCCGGGAATGGCGCCCGGCA
GTAGATGTGCTTCATAGAACATCGTGCGGGCCTCCGTATTGTTAGACACA
CAGCACGACGAAGTATTGTCGTGGGACTGCAACTACTGTGCGCTCCGGGT
GCCAGAAGAATACGTCGTGGCTCCGGTAAACAATCTGCAAACACGAATCA
ACTTACAGGAAGCCATGTGCACGACAGACACAGCGATCGCAGGTGGAGAA
CTTGGGGACATTTGGAAGCGAGCTGTGGCCACGTCGCCGGGGATGGCGAA
TCAACTTACAGCAAGCCATGTGCACGACATAGCGATCGCAGGTGGAGAAC
TTGGGGACATTTGGAAGCGAGCCGTGGCCACGTCGCCGGGAATGGCGCCC
GGCAGTAG
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