mRNA_L-elsbetiae_contig1109.978.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1109.978.1
Unique NamemRNA_L-elsbetiae_contig1109.978.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1109.978.1 vs. uniprot
Match: A0A6H5JQE4_9PHAE (DUF775 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQE4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.230e-6
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:    1 QFMSSFSQATQAGPEVMVVPTNVLDRYV 84
            QFMSSFSQ+TQAGPE+MVVPTNVLDR++
Sbjct:  145 QFMSSFSQSTQAGPELMVVPTNVLDRWI 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1109.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQE4_9PHAE3.230e-685.71DUF775 domain-containing protein n=2 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1109contigL-elsbetiae_contig1109:20832..21339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.950906-UTR-L-elsbetiae_contig1109:20831..209731622815322.950906-UTR-L-elsbetiae_contig1109:20831..20973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 20832..20973 +
1691682838.2890775-UTR-L-elsbetiae_contig1109:20831..209731691682838.2890775-UTR-L-elsbetiae_contig1109:20831..20973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1109 20832..20973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.9614198-CDS-L-elsbetiae_contig1109:20973..213391622815322.9614198-CDS-L-elsbetiae_contig1109:20973..21339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 20974..21339 +
1691682838.2989924-CDS-L-elsbetiae_contig1109:20973..213391691682838.2989924-CDS-L-elsbetiae_contig1109:20973..21339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1109 20974..21339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1109.978.1prot_L-elsbetiae_contig1109.978.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1109 20974..21339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1109.978.1

>prot_L-elsbetiae_contig1109.978.1 ID=prot_L-elsbetiae_contig1109.978.1|Name=mRNA_L-elsbetiae_contig1109.978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MDGSYICTAVYRTCPVFTDAHENWEQSCESGKLNISVNLVGVSSTDLTAH
HVPSLRKELFEMPSGSFGLIAHASLVRDITLTFMYHQSMPPPTLTECVYP
PFGHFFTSSLNPFTADDISAPS
back to top

mRNA from alignment at L-elsbetiae_contig1109:20832..21339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1109.978.1 ID=mRNA_L-elsbetiae_contig1109.978.1|Name=mRNA_L-elsbetiae_contig1109.978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=508bp|location=Sequence derived from alignment at L-elsbetiae_contig1109:20832..21339+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTTTATGTCATCCTTCAGTCAAGCGACCCAAGCTGGTCCCGAGGTGAT
GGTGGTGCCAACAAACGTGCTGGACAGGTATGTATATACAGCTTTTCTGT
TAGAGATTTGGCTCGCAGCCCCTCTGGCTTCTGGTACCGAGAATGGATGG
TTCCTACATATGTACAGCAGTATACCGCACGTGCCCAGTTTTTACTGATG
CGCACGAAAACTGGGAACAATCGTGCGAAAGTGGCAAATTGAATATTTCT
GTCAATCTCGTTGGCGTCTCTTCAACTGACCTTACCGCGCATCACGTGCC
CTCCCTTAGGAAGGAACTCTTCGAGATGCCCTCGGGCTCTTTTGGGCTGA
TCGCTCATGCAAGCCTGGTTCGGGATATAACCCTAACTTTTATGTACCAC
CAGTCAATGCCTCCACCAACCTTAACAGAGTGTGTATACCCCCCTTTCGG
GCATTTCTTCACAAGCAGTCTCAATCCATTCACGGCTGATGATATCTCTG
CTCCCTCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1109:20832..21339+

>mRNA_L-elsbetiae_contig1109.978.1 ID=mRNA_L-elsbetiae_contig1109.978.1|Name=mRNA_L-elsbetiae_contig1109.978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1109:20832..21339+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGTTCCTACATATGTACAGCAGTATACCGCACGTGCCCAGTTTT
TACTGATGCGCACGAAAACTGGGAACAATCGTGCGAAAGTGGCAAATTGA
ATATTTCTGTCAATCTCGTTGGCGTCTCTTCAACTGACCTTACCGCGCAT
CACGTGCCCTCCCTTAGGAAGGAACTCTTCGAGATGCCCTCGGGCTCTTT
TGGGCTGATCGCTCATGCAAGCCTGGTTCGGGATATAACCCTAACTTTTA
TGTACCACCAGTCAATGCCTCCACCAACCTTAACAGAGTGTGTATACCCC
CCTTTCGGGCATTTCTTCACAAGCAGTCTCAATCCATTCACGGCTGATGA
TATCTCTGCTCCCTCCATGGATGGTTCCTACATATGTACAGCAGTATACC
GCACGTGCCCAGTTTTTACTGATGCGCACGAAAACTGGGAACAATCGTGC
GAAAGTGGCAAATTGAATATTTCTGTCAATCTCGTTGGCGTCTCTTCAAC
TGACCTTACCGCGCATCACGTGCCCTCCCTTAGGAAGGAACTCTTCGAGA
TGCCCTCGGGCTCTTTTGGGCTGATCGCTCATGCAAGCCTGGTTCGGGAT
ATAACCCTAACTTTTATGTACCACCAGTCAATGCCTCCACCAACCTTAAC
AGAGTGTGTATACCCCCCTTTCGGGCATTTCTTCACAAGCAGTCTCAATC
CATTCACGGCTGATGATATCTCTGCTCCCTCC
back to top