mRNA_L-elsbetiae_contig1109.975.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1109.975.1 vs. uniprot
Match: D7FMX2_ECTSI (Myosin heavy chain, class XI n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX2_ECTSI) HSP 1 Score: 981 bits (2536), Expect = 0.000e+0 Identity = 500/745 (67.11%), Postives = 597/745 (80.13%), Query Frame = 1 Query: 1 DESLADAREAYLKCISLNDPSGDDLNVQAQVGLARLELVAGNPASIHSALARLSEAMRDHPYSNTIEDVIYLLAIQTAFPSTGQTTASAMGALEYLDFLRESYTPANEGASTARLYPRWDSNEEDEGEREQDGSLVGAAESWRGQGLHVNGLPAWALQFQIGLLASRMGNSTRGMETMENAFTSYETWLPSRSRG---DDISDIDTIRRAWYNGLPHWTAWVQHPRTWLDLGDISYRQGPGYFHLAAEAYRGALQRAGDIFRPDQQQEIIAYRIAKCCSRYGDNAGAIAGIEQLLYTCNFWSEKYSACIARTIASTLRSVRDFQDTIVQAHASKLIRNFQVICFKHWMKHHSLVRLDKAVAKIQQALLRGKKARALVQSILAARKSRARLEQTVEEMHYKCVTRRCLRRLSKQIVVGRRERAAITIQAMARGVVGRELASDERKRREGINLLLLKALKKLGIPVFRGWYKAAHDTRKERMATRIQTNWRTFQARRRWMVTKKKVSRALEMGIEAVGRHQQADKRRVVETWKNVVLARKIVTVQRTVRVWLAKRVASEIRRQKGDLNRLFNRVMKPVRRQCFVALVRNKNACRKEKGNKAIAIQCWWRCQRAIASIQKVREYRGLIQKAFETVASNHDRRLLIRCCHEWRENIPKHKAASQIQAAWRGWQGRSRASWFRDRQARFEVAVEVLRAVYQRRVREYALEEWRIRAWCGRLVTKLAARFRGSRARKAFAERLSLLRAQQV 2226 DE+LA+AREAY +C L P G+++ VQAQVGLARL+ V G+PASI SALARL+E +RDHPYS IE+VIY LA+ AFP T Q+TA+A GALEYLD+LR+SY P+ EGA TA +YPRWD+ E++ + E+DG + G AE W+G+GL V+GLPAWALQFQIGLLASR+GNSTRGMETMENAFTSYE WLP RSRG D D+D IRR+WYNGLPHWTAWVQHPRTWLDLGDI+YRQG G FH+AAEAYRGAL+RAG++F PDQQ E IAYRIAKCCSR GD AGA++GIE+LLYT NFWSE+Y AC IA RS RDF++ IV AHASKLIRNFQV+C+KHW +HH +VRLDKA A+IQ ALLRG KARA+V+ ILAARKSR LEQ VE MH KC+ RR LRRLSKQ++VGRRERAA TIQAMARGVVGRE ASDER R+ IN LLL AL++LG PVFR WYKAAH R+ RM+ +IQ+ WRTF+A R +TK KVSRA EMGI A+GR+Q ADKRRVVETWK++VL RK+V VQ R+WLAKRV S R ++ +L RLF RV KP+RRQCFVAL RN+ CRK K + IQCWWRC+ AI + ++ REYR I A++TV +NH+RRLL RCC EWRENIPK KAA++IQAAWRGW+GR RA+WF+DR+ RFE +VLRAV ++ VR+ A++EWR AW R+ TKL+AR+RG RAR AFA ++S LR QQ Sbjct: 15 DEALAEAREAYRRCAELEGPRGENIKVQAQVGLARLDFVVGDPASIRSALARLAEILRDHPYSQHIEEVIYFLAVPAAFPQTKQSTATATGALEYLDYLRDSYAPSREGAPTAMMYPRWDAPEQEVRDSERDGIVPGDAERWQGKGLQVHGLPAWALQFQIGLLASRLGNSTRGMETMENAFTSYEAWLP-RSRGQFNDGAPDVDAIRRSWYNGLPHWTAWVQHPRTWLDLGDIAYRQGVGCFHVAAEAYRGALKRAGNLFPPDQQ-ESIAYRIAKCCSRCGDLAGAVSGIEELLYTHNFWSERYRACARAVIA---RSARDFREAIVLAHASKLIRNFQVVCWKHWKQHHDMVRLDKAAAQIQ-ALLRGTKARAVVRFILAARKSRDLLEQLVENMHDKCIARRVLRRLSKQVMVGRRERAATTIQAMARGVVGRETASDERNRQARINELLLNALRRLGTPVFREWYKAAHSLRRARMSIKIQSRWRTFRAMRALTLTKTKVSRAHEMGILAIGRNQLADKRRVVETWKHLVLERKVVAVQGMARIWLAKRVMSRGRVRQKELRRLFMRVTKPIRRQCFVALARNRTTCRKNKKALVLVIQCWWRCRHAIGTTRRAREYRKAIHGAYDTVVTNHERRLLTRCCREWRENIPKQKAATKIQAAWRGWEGRLRAAWFKDREVRFEEFAQVLRAVSRQAVRKVAIKEWRTLAWLSRMTTKLSARYRGIRARTAFAAKMSALRRQQA 753
BLAST of mRNA_L-elsbetiae_contig1109.975.1 vs. uniprot
Match: A0A6H5KW86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW86_9PHAE) HSP 1 Score: 805 bits (2078), Expect = 1.100e-282 Identity = 435/760 (57.24%), Postives = 528/760 (69.47%), Query Frame = 1 Query: 34 LKCISLNDPSGDDLNVQAQVGLARLELVAGNPASIHSALARLSEAMRDHPYSNTIEDVIYLLAIQTAFPSTGQTTASAMGALEYLDFLRESYTPANEGASTARLYPRWDSNEEDEGEREQDGSLVGAAESWRGQGLHVNGLPAWALQFQIGLLASRMGNSTRGMETMENAFTSYETWLPSRSR----------------------GDDISDIDTIRRAWYNGLPHWTAWVQHPRTWLDLGDISYRQGPGYFHLAAEAYRGALQRAGDIFRPDQQQEIIAYRIAKCCSRYGDNAGAIAGIEQLLYTCNFWSEKYSACIARTIASTLRSVRDFQDTIVQAHASKLIRNFQVICFKHWMKHHSLVRLDKAVAKIQQALLRGKKARALVQSILAARKSRAR-------LEQTVEEMHYKCVTRRCLRRLSKQIVVGRRERAAITIQAMARGVVGRELASDERKRREGINLLLLKALKKLGIPVFRGWYKAAHDTRKERMATRIQTNWRTFQARRRWMVTKKKVSRALEMGIEAVGRHQQADKRRVVETWKNVVLARKIVTVQRTVRVWLAKRVASEIRRQKGDLNRLFNRVMKPVRRQCFVALVRNKNACRKEKGNKAIAIQCWWRCQRAIASIQKVREYRGLIQKAFETVASNHDRRLLIRCCHEWRENIPKHKAASQIQAAWRGWQGRSRASWFRDRQARFEVAVEVLRAVYQRRVREYALEEWRIRAWCGRLVTKLAARFRGSRARKAFAERLSLLRAQQV 2226 ++C L P G+++ VQAQVGLARL+ V G+PASI S LARL+E +RDHPYS IE+VIY LAI AFP T Q+TA+AM ALEYLD+LR+SYTP+ EGA TA +YPRWD+ E++ + E+DG + G AE W+G+ L V+GLPAWALQFQ+GLLASR+G+STRGMETMENAFTSYE WLP R D D+D +RR+WY+GLPHWTAWVQHP A R + A QE IA+RIAKCCSR GD AGAI+GIE+LLYT NFWSE+Y AC IA RS RDFQ+ IV AHASKLIR+FQ ALLRG KARA+V+ ILAAR+SR LEQ VE MH KC+ RR LRRLSKQ+ VGRRERAA T+QAMARGVVGRE+A DER RR IN LLL AL++LG PVFR WYKAAH+ R+ RM+ ++Q+ WRTF+A R +TK KVSRA EMGI A+GR+Q ADKR VVETWK++VL RK+V VQ R+WLAKRV S R ++ +L RLF RV KP+RRQCFVAL RN+ CRK K + IQCWWRC+ AI + ++ RE+R I A++TV +NH+RRLLIRCC EWRENIPK KAA+++QAAWRGW+GR RA+WF+DR+ RFE +VLRAV ++ R+ A +EWR AW GR+ TKLAAR+RG RAR AFA ++S LR QQ Sbjct: 5 VRCAELEGPRGENIKVQAQVGLARLDFVVGDPASIRSGLARLAEVLRDHPYSQHIEEVIYFLAIPAAFPQTEQSTATAMRALEYLDYLRDSYTPSREGAPTAMMYPRWDTPEQEVCDSERDGMVPGDAERWQGRELQVHGLPAWALQFQMGLLASRLGDSTRGMETMENAFTSYEAWLPRCDRYTADMGSSSLRISLCAWSRVQFNDGTPDVDAVRRSWYHGLPHWTAWVQHP----------------------SAVRSSRHLA---------QESIAFRIAKCCSRCGDLAGAISGIEELLYTRNFWSERYRACARAVIA---RSARDFQEAIVLAHASKLIRSFQ-------------------------ALLRGTKARAVVRFILAARQSRGDQVYGTDLLEQLVENMHDKCLARRVLRRLSKQVTVGRRERAATTVQAMARGVVGREIACDERNRRARINELLLNALRRLGTPVFREWYKAAHNLRRARMSIKVQSRWRTFRAMRALTLTKTKVSRAHEMGILAIGRNQLADKRGVVETWKHIVLERKVVAVQGMARIWLAKRVMSRRRVRQEELRRLFMRVTKPIRRQCFVALARNRTTCRKNKKAMVLVIQCWWRCRHAIGTTRRAREHRNAIHSAYDTVVTNHERRLLIRCCREWRENIPKQKAATKMQAAWRGWEGRLRAAWFKDREVRFEEFAQVLRAVSRQVDRKVAFKEWRTLAWLGRMTTKLAARYRGIRARTAFAAKMSTLRRQQA 705 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1109.975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1109.975.1 >prot_L-elsbetiae_contig1109.975.1 ID=prot_L-elsbetiae_contig1109.975.1|Name=mRNA_L-elsbetiae_contig1109.975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=744bp DESLADAREAYLKCISLNDPSGDDLNVQAQVGLARLELVAGNPASIHSALback to top mRNA from alignment at L-elsbetiae_contig1109:1806..8465+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1109.975.1 ID=mRNA_L-elsbetiae_contig1109.975.1|Name=mRNA_L-elsbetiae_contig1109.975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6660bp|location=Sequence derived from alignment at L-elsbetiae_contig1109:1806..8465+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1109:1806..8465+ >mRNA_L-elsbetiae_contig1109.975.1 ID=mRNA_L-elsbetiae_contig1109.975.1|Name=mRNA_L-elsbetiae_contig1109.975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4464bp|location=Sequence derived from alignment at L-elsbetiae_contig1109:1806..8465+ (Laminarionema elsbetiae ELsaHSoW15)back to top |