mRNA_L-elsbetiae_contig11082.973.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11082.973.1
Unique NamemRNA_L-elsbetiae_contig11082.973.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11082.973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11082contigL-elsbetiae_contig11082:3825..4319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_004600.1
Exons1
Model size495
Cds size429
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.7176816-UTR-L-elsbetiae_contig11082:3824..38901622815322.7176816-UTR-L-elsbetiae_contig11082:3824..3890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11082 3825..3890 +
1691682838.1084886-UTR-L-elsbetiae_contig11082:3824..38901691682838.1084886-UTR-L-elsbetiae_contig11082:3824..3890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11082 3825..3890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.7277849-CDS-L-elsbetiae_contig11082:3890..43191622815322.7277849-CDS-L-elsbetiae_contig11082:3890..4319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11082 3891..4319 +
1691682838.1171074-CDS-L-elsbetiae_contig11082:3890..43191691682838.1171074-CDS-L-elsbetiae_contig11082:3890..4319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11082 3891..4319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11082.973.1prot_L-elsbetiae_contig11082.973.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11082 3891..4319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11082.973.1

>prot_L-elsbetiae_contig11082.973.1 ID=prot_L-elsbetiae_contig11082.973.1|Name=mRNA_L-elsbetiae_contig11082.973.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MADPVGADVVPPVVQAEVPATTAAAEVEAVKTTTVAVATAPAATVPSSTA
APAPVSSGEALSAGAISIPEGTAVAAVDAAPSASTPSDVGTSLPDAVMGE
GLPAKMSGVAATPAAADASVKPPGKGEHAHNSHLTKKNAMKAI
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mRNA from alignment at L-elsbetiae_contig11082:3825..4319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11082.973.1 ID=mRNA_L-elsbetiae_contig11082.973.1|Name=mRNA_L-elsbetiae_contig11082.973.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=495bp|location=Sequence derived from alignment at L-elsbetiae_contig11082:3825..4319+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGGGGACCACTATTTCCTAAGGTTTTTAGACAGCGAAAGAAGCTAACC
CCTAACCCTAACCCTAATGGCAGACCCTGTGGGTGCCGATGTAGTGCCAC
CGGTGGTGCAAGCTGAAGTTCCAGCAACAACGGCGGCGGCAGAGGTCGAG
GCTGTCAAAACAACAACGGTAGCCGTGGCAACAGCTCCAGCCGCTACTGT
TCCAAGTAGCACTGCTGCCCCAGCACCGGTCAGTTCTGGCGAAGCCCTGA
GTGCGGGTGCTATTAGCATACCGGAGGGAACCGCTGTTGCTGCTGTTGAT
GCTGCGCCGTCTGCGTCAACTCCGAGCGATGTCGGAACATCGCTCCCGGA
TGCTGTCATGGGAGAGGGACTCCCCGCCAAGATGTCTGGGGTAGCCGCTA
CCCCTGCCGCTGCCGACGCTAGCGTCAAGCCCCCCGGCAAGGGCGAGCAT
GCTCACAATAGCCACTTGACGAAAAAGAACGCGATGAAGGCGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11082:3825..4319+

>mRNA_L-elsbetiae_contig11082.973.1 ID=mRNA_L-elsbetiae_contig11082.973.1|Name=mRNA_L-elsbetiae_contig11082.973.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig11082:3825..4319+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGACCCTGTGGGTGCCGATGTAGTGCCACCGGTGGTGCAAGCTGA
AGTTCCAGCAACAACGGCGGCGGCAGAGGTCGAGGCTGTCAAAACAACAA
CGGTAGCCGTGGCAACAGCTCCAGCCGCTACTGTTCCAAGTAGCACTGCT
GCCCCAGCACCGGTCAGTTCTGGCGAAGCCCTGAGTGCGGGTGCTATTAG
CATACCGGAGGGAACCGCTGTTGCTGCTGTTGATGCTGCGCCGTCTGCGT
CAACTCCGAGCGATGTCGGAACATCGCTCCCGGATGCTGTCATGGGAGAG
GGACTCCCCGCCAAGATGTCTGGGGTAGCCGCTACCCCTGCCGCTGCCGA
CGCTAGCGTCAAGCCCCCCGGCAAGGGCGAGCATGCTCACAATAGCCACT
TGACGAAAAAGAACGCGATGAAGGCGATCATGGCAGACCCTGTGGGTGCC
GATGTAGTGCCACCGGTGGTGCAAGCTGAAGTTCCAGCAACAACGGCGGC
GGCAGAGGTCGAGGCTGTCAAAACAACAACGGTAGCCGTGGCAACAGCTC
CAGCCGCTACTGTTCCAAGTAGCACTGCTGCCCCAGCACCGGTCAGTTCT
GGCGAAGCCCTGAGTGCGGGTGCTATTAGCATACCGGAGGGAACCGCTGT
TGCTGCTGTTGATGCTGCGCCGTCTGCGTCAACTCCGAGCGATGTCGGAA
CATCGCTCCCGGATGCTGTCATGGGAGAGGGACTCCCCGCCAAGATGTCT
GGGGTAGCCGCTACCCCTGCCGCTGCCGACGCTAGCGTCAAGCCCCCCGG
CAAGGGCGAGCATGCTCACAATAGCCACTTGACGAAAAAGAACGCGATGA
AGGCGATC
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