mRNA_L-elsbetiae_contig11082.972.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11082.972.1
Unique NamemRNA_L-elsbetiae_contig11082.972.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11082.972.1 vs. uniprot
Match: D8LJ36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ36_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.270e-8
Identity = 82/253 (32.41%), Postives = 112/253 (44.27%), Query Frame = 2 
Query:  512 QQGTATQSNFVKVVRARLW---GPRRGA--------------------TAAAPTVSVPAFEIEEQDSNEAATFQMRKHRQPRTALDISGHCFAKDLQVEIGRARN-RRQQSVVSEPVDSDSESLPETISQRQQDQFHQQQQQSMIFDVPEADR---------GLFFSCSSTTRLKEGVGGGEHADGEKSSPRSLRASSSTSTLPPSP---DAAVTAAGIGS------RSERPPLVPK--MRNRGTTGTLCSRR 1138
            ++  AT+  F+ V+RA LW    P   A                    T A   V   A E++  + N A   + R+  +PRTALD+SGH FAK +Q +I R ++ RR+ +VV E  D  + S    ++           Q+   +D PE            G ++    T R +      EHA    SS RS+RA SS STLPPSP    AA  AAG         RSE PPL PK   R   ++   CSR+
Sbjct:   42 KRSAATE--FIGVIRALLWLSPSPHHAAPAPAAAXXXXXXXXXXXXXXTTAGMAVIAQANEVKMAEIN-ADKPRKRQQWRPRTALDVSGHSFAKPVQAKIERTKSLRRRPAVVPESSDVSTASYSPALAS----------QKPTFWDFPEGRTEDDTHRPGGGRWW----TQRERGEAVSDEHA----SSLRSVRACSSASTLPPSPVGGTAATAAAGPPDAAPNQPRSELPPLAPKNGCRKYSSSSRRCSRQ 273
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11082.972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ36_ECTSI3.270e-832.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11082contigL-elsbetiae_contig11082:952..3199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1984
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11082.972.1prot_L-elsbetiae_contig11082.972.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11082 1765..2808 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.7578287-UTR-L-elsbetiae_contig11082:951..17641622815322.7578287-UTR-L-elsbetiae_contig11082:951..1764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11082 952..1764 -
1691682838.1308851-UTR-L-elsbetiae_contig11082:951..17641691682838.1308851-UTR-L-elsbetiae_contig11082:951..1764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11082 952..1764 -
1622815322.7909343-UTR-L-elsbetiae_contig11082:2808..31991622815322.7909343-UTR-L-elsbetiae_contig11082:2808..3199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11082 2809..3199 -
1691682838.1674163-UTR-L-elsbetiae_contig11082:2808..31991691682838.1674163-UTR-L-elsbetiae_contig11082:2808..3199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11082 2809..3199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.7694585-CDS-L-elsbetiae_contig11082:1764..22021622815322.7694585-CDS-L-elsbetiae_contig11082:1764..2202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11082 1765..2202 -
1691682838.1415474-CDS-L-elsbetiae_contig11082:1764..22021691682838.1415474-CDS-L-elsbetiae_contig11082:1764..2202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11082 1765..2202 -
1622815322.780353-CDS-L-elsbetiae_contig11082:2466..28081622815322.780353-CDS-L-elsbetiae_contig11082:2466..2808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11082 2467..2808 -
1691682838.1552079-CDS-L-elsbetiae_contig11082:2466..28081691682838.1552079-CDS-L-elsbetiae_contig11082:2466..2808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11082 2467..2808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11082.972.1

>prot_L-elsbetiae_contig11082.972.1 ID=prot_L-elsbetiae_contig11082.972.1|Name=mRNA_L-elsbetiae_contig11082.972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=260bp
MLESFSLPLWVISSIPHNAENCTWKIVHTVIIVSLLFYHDQQGTATQSNF
VKVVRARLWGPRRGATAAAPTVSVPAFEIEEQDSNEAATFQMRKHRQPRT
ALDISGHCFAKDLQVEIGRARNRRQQSVVSEPVDSDSESLPETISQRQQD
QFHQQQQQSMIFDVPEADRGLFFSCSSTTRLKEGVGGGEHADGEKSSPRS
LRASSSTSTLPPSPDAAVTAAGIGSRSERPPLVPKMRNRGTTGTLCSRRQ
QTSNRAYFA*
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mRNA from alignment at L-elsbetiae_contig11082:952..3199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11082.972.1 ID=mRNA_L-elsbetiae_contig11082.972.1|Name=mRNA_L-elsbetiae_contig11082.972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2248bp|location=Sequence derived from alignment at L-elsbetiae_contig11082:952..3199- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGAGGGTGTGCTGTTAGGAGTTTAATGTCGAGCAGTAGAATGTGCA
AACGAACATCTCCTCACATCCGACTGTTGGTATCTAGACTAGAACCTAGT
CTTTGTACACTCTGTAGCTAAAACATAGGCTAGACTCGTCTACCGCCATA
CGTTTCATGTTTCTAGATCATCGCTGAAGATGCGCGTGCTCTAACAATCT
GGCACTGCCGATGGGCCTTCCTTCCATCAACGCTAATGGTCCCCCCGTCT
CCTCCATCTCATTCATGCCTCTGCACCAAGGTATGGCCTGCCGCGTCCTC
TTCTGTCGGCCGAAAGTGTCGGACCCGCCCAATCCCCTCGTCCTAGACTA
AATGAGACGTCCTTTCACGAAGGAGATTCGCCCGCCATATAATGCTTGAA
AGCTTTTCCCTGCCACTGTGGGTGATTTCGTCCATCCCTCACAACGCTGA
AAATTGCACTTGGAAAATTGTACATACCGTCATAATTGTATCTCTGCTCT
TCTATCACGATCAGCAGGGAACGGCAACGCAGAGCAATTTTGTGAAGGTG
GTGCGCGCGCGACTTTGGGGTCCTCGTCGCGGTGCAACAGCAGCAGCGCC
CACCGTATCGGTGCCTGCTTTCGAGATCGAAGAACAAGATTCCAACGAGG
CCGCCACCTTCCAAATGCGCAAACACCGGCAGCCACGGACCGCTTTGGAT
ATCAGCGGGCATTGCTTCGCAAAGGATCTGCAGGTGAAAGAGGAGGCATG
TCTGGAAAAAAAACGCAGAGAGCATCAATCAGCAATTTAGAACAACCTCT
CCGTTGATTTGAAGGCTCACCGTCTACTTTTGCTCACCGCGTGTATTTAC
GTCCGGTAGAACGCATTGCTACCGTAGTCTGCTGGAAAACGTCGAGTGTT
ACATAAATTAGAGAAAAATCACCGCACAACCTGTACTGAATATATATATA
GTCTATTCGTTTCCCAGAATGCTCTCGCCGCGATCGCTGAAAAACAGGTG
GAAATTGGACGCGCCAGAAACCGGCGGCAGCAATCGGTAGTCTCCGAGCC
TGTCGATTCCGACTCGGAATCGCTCCCGGAAACCATATCCCAGCGACAGC
AGGATCAGTTCCACCAGCAGCAGCAGCAGTCGATGATTTTTGACGTTCCG
GAGGCAGATCGTGGCCTTTTCTTCTCCTGCTCCTCCACAACGCGGCTGAA
AGAAGGCGTTGGGGGAGGGGAGCACGCAGACGGGGAAAAATCGTCGCCGC
GATCGTTGCGCGCCTCTTCATCAACATCGACCTTGCCCCCCTCTCCCGAC
GCCGCTGTCACCGCCGCTGGAATCGGATCGCGATCGGAACGCCCCCCGCT
CGTCCCAAAAATGAGGAATCGGGGCACCACTGGTACATTGTGTAGTAGGC
GGCAGCAGACATCTAATAGGGCGTATTTCGCGTAAGGCTAGGTAGGAGGG
CGGTGTGTTTCCTCGCTCGGTGGGCTAGGCCATGGCTGCTGTCCTCGGGA
CTCTGGTGATGGGCGTGGTGCGGTGCGGTATGGTTTGGTATGCTATGGTG
GTATGTAATGCCCGTCGTGCGGTATGGTTTGGTTGGTATGGTGGTATGCA
ATGGCGAGGGCAAGCAATCCTTGCCTCACAGGTGGCCCGCAGTTGAGAAA
CGAAGAGAGCTTTACCGGCTTTCGAGCCCAGTATACGCTATGCAGCGAAC
ACAGATGACTAACTTGTTGTTAGACACATCGAGGTTGTTGTTAAATGGTA
CCCAGAAGGGGTTCTACAAAAGAGTTCCGTGGTGTGCGGCCAGCTGCAAG
TAGCGGTAGCAGATACGTCGTCGACGTTTCAGCAGTCGATCGCACGTGTT
ATGTCTGTATTCAGTGCGCCTGCGAAACAGAATGCACCGGTTTTGCTCCG
GTTTACGATTCGCAGCACCTCCGCGCGGAGTTATGTTCCTTCGTGCGCAC
CCCAGTGTGTACGCTACACCTTTCATGGACACACGTGTTCGTGAAAACCG
CGTATTATGAAGAACTAACACTAGTGCGGTATGTACGTAGAGCAGAACGC
GGAATTTGTCCACGTGCGGCCGGAAAGCAAAAGCTCTTGGTATAGGCAAC
CCCGATCCGGAACTATATTCGCTACGGGGGCAAACAGATTTTGGGGGAAA
CGCCCGGCTAAACTACGGGATTTTTGTGCGTTTTTGGACGATCTAGAGAT
GACATTTAAGTACATACTTTAGCATCATTTTTGTGTTAAGCAGGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11082:952..3199-

>mRNA_L-elsbetiae_contig11082.972.1 ID=mRNA_L-elsbetiae_contig11082.972.1|Name=mRNA_L-elsbetiae_contig11082.972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1560bp|location=Sequence derived from alignment at L-elsbetiae_contig11082:952..3199- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGAAAGCTTTTCCCTGCCACTGTGGGTGATTTCGTCCATCCCTCA
CAACGCTGAAAATTGCACTTGGAAAATTGTACATACCGTCATAATTGTAT
CTCTGCTCTTCTATCACGATCAGCAGGGAACGGCAACGCAGAGCAATTTT
GTGAAGGTGGTGCGCGCGCGACTTTGGGGTCCTCGTCGCGGTGCAACAGC
AGCAGCGCCCACCGTATCGGTGCCTGCTTTCGAGATCGAAGAACAAGATT
CCAACGAGGCCGCCACCTTCCAAATGCGCAAACACCGGCAGCCACGGACC
GCTTTGGATATCAGCGGGCATTGCTTCGCAAAGGATCTGCAGATGCTTGA
AAGCTTTTCCCTGCCACTGTGGGTGATTTCGTCCATCCCTCACAACGCTG
AAAATTGCACTTGGAAAATTGTACATACCGTCATAATTGTATCTCTGCTC
TTCTATCACGATCAGCAGGGAACGGCAACGCAGAGCAATTTTGTGAAGGT
GGTGCGCGCGCGACTTTGGGGTCCTCGTCGCGGTGCAACAGCAGCAGCGC
CCACCGTATCGGTGCCTGCTTTCGAGATCGAAGAACAAGATTCCAACGAG
GCCGCCACCTTCCAAATGCGCAAACACCGGCAGCCACGGACCGCTTTGGA
TATCAGCGGGCATTGCTTCGCAAAGGATCTGCAGGTGGAAATTGGACGCG
CCAGAAACCGGCGGCAGCAATCGGTAGTCTCCGAGCCTGTCGATTCCGAC
TCGGAATCGCTCCCGGAAACCATATCCCAGCGACAGCAGGATCAGTTCCA
CCAGCAGCAGCAGCAGTCGATGATTTTTGACGTTCCGGAGGCAGATCGTG
GCCTTTTCTTCTCCTGCTCCTCCACAACGCGGCTGAAAGAAGGCGTTGGG
GGAGGGGAGCACGCAGACGGGGAAAAATCGTCGCCGCGATCGTTGCGCGC
CTCTTCATCAACATCGACCTTGCCCCCCTCTCCCGACGCCGCTGTCACCG
CCGCTGGAATCGGATCGCGATCGGAACGCCCCCCGCTCGTCCCAAAAATG
AGGAATCGGGGCACCACTGGTACATTGTGTAGTAGGCGGCAGCAGACATC
TAATAGGGCGTATTTCGCGTAAGTGGAAATTGGACGCGCCAGAAACCGGC
GGCAGCAATCGGTAGTCTCCGAGCCTGTCGATTCCGACTCGGAATCGCTC
CCGGAAACCATATCCCAGCGACAGCAGGATCAGTTCCACCAGCAGCAGCA
GCAGTCGATGATTTTTGACGTTCCGGAGGCAGATCGTGGCCTTTTCTTCT
CCTGCTCCTCCACAACGCGGCTGAAAGAAGGCGTTGGGGGAGGGGAGCAC
GCAGACGGGGAAAAATCGTCGCCGCGATCGTTGCGCGCCTCTTCATCAAC
ATCGACCTTGCCCCCCTCTCCCGACGCCGCTGTCACCGCCGCTGGAATCG
GATCGCGATCGGAACGCCCCCCGCTCGTCCCAAAAATGAGGAATCGGGGC
ACCACTGGTACATTGTGTAGTAGGCGGCAGCAGACATCTAATAGGGCGTA
TTTCGCGTAA
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